From 9bf74ffccb81c4a292aded4dd3f73253b669f105 Mon Sep 17 00:00:00 2001 From: <> Date: Mon, 4 Nov 2024 16:42:22 +0000 Subject: [PATCH] Deployed e1f9604 with MkDocs version: 1.6.1 --- 404.html | 2 +- about/index.html | 2 +- docs/assertions/assertions/index.html | 2 +- docs/assertions/fasta/index.html | 2 +- docs/assertions/files/index.html | 2 +- docs/assertions/libraries/index.html | 2 +- docs/assertions/regular-expressions/index.html | 2 +- docs/assertions/snapshots/index.html | 6 +++--- docs/cli/clean/index.html | 2 +- docs/cli/coverage/index.html | 2 +- docs/cli/generate/index.html | 2 +- docs/cli/init/index.html | 2 +- docs/cli/list/index.html | 2 +- docs/cli/test/index.html | 2 +- docs/configuration/index.html | 2 +- docs/getting-started/index.html | 2 +- docs/nftest_pipelines/index.html | 2 +- docs/plugins/developing-plugins/index.html | 2 +- docs/plugins/using-plugins/index.html | 2 +- docs/running-tests/index.html | 2 +- docs/testcases/global_variables/index.html | 2 +- docs/testcases/index.html | 2 +- docs/testcases/nextflow_function/index.html | 4 ++-- docs/testcases/nextflow_pipeline/index.html | 2 +- docs/testcases/nextflow_process/index.html | 4 ++-- docs/testcases/nextflow_workflow/index.html | 4 ++-- docs/testcases/params/index.html | 2 +- docs/testcases/setup/index.html | 2 +- index.html | 2 +- installation/index.html | 2 +- resources/index.html | 2 +- sitemap.xml.gz | Bin 127 -> 127 bytes tutorials/github-actions/index.html | 2 +- tutorials/index.html | 2 +- 34 files changed, 38 insertions(+), 38 deletions(-) diff --git a/404.html b/404.html index 8adfe9a0..7c376c48 100644 --- a/404.html +++ b/404.html @@ -12,7 +12,7 @@ - + diff --git a/about/index.html b/about/index.html index e2b913a0..6eed0060 100644 --- a/about/index.html +++ b/about/index.html @@ -14,7 +14,7 @@ - + diff --git a/docs/assertions/assertions/index.html b/docs/assertions/assertions/index.html index 786d641a..3b6af421 100644 --- a/docs/assertions/assertions/index.html +++ b/docs/assertions/assertions/index.html @@ -16,7 +16,7 @@ - + diff --git a/docs/assertions/fasta/index.html b/docs/assertions/fasta/index.html index aba3de97..5e1143c8 100644 --- a/docs/assertions/fasta/index.html +++ b/docs/assertions/fasta/index.html @@ -16,7 +16,7 @@ - + diff --git a/docs/assertions/files/index.html b/docs/assertions/files/index.html index d93256fa..45a4df44 100644 --- a/docs/assertions/files/index.html +++ b/docs/assertions/files/index.html @@ -16,7 +16,7 @@ - + diff --git a/docs/assertions/libraries/index.html b/docs/assertions/libraries/index.html index 23b612a1..7db72046 100644 --- a/docs/assertions/libraries/index.html +++ b/docs/assertions/libraries/index.html @@ -16,7 +16,7 @@ - + diff --git a/docs/assertions/regular-expressions/index.html b/docs/assertions/regular-expressions/index.html index b5d56959..65da32e3 100644 --- a/docs/assertions/regular-expressions/index.html +++ b/docs/assertions/regular-expressions/index.html @@ -16,7 +16,7 @@ - + diff --git a/docs/assertions/snapshots/index.html b/docs/assertions/snapshots/index.html index ca51c98a..253a128e 100644 --- a/docs/assertions/snapshots/index.html +++ b/docs/assertions/snapshots/index.html @@ -16,7 +16,7 @@ - + @@ -1411,7 +1411,7 @@

Cleaning Obsolete Snapshots

nf-test test tests/main.nf.test --clean-snapshot
-

💡 Obsolete snapshots can only be detected when running all tests in a test file simultaneously, and when all tests pass. If you run a single test or if tests are skipped, nf-test cannot detect obsolete snapshots.

+

💡 Obsolete snapshots can only be detected when running all tests in a test file simultaneously, and when all tests pass. If you run a single test or if tests are skipped, nf-test cannot detect obsolete snapshots.

Constructing Complex Snapshots

It is also possible to include multiple objects into one snapshot:

@@ -1452,7 +1452,7 @@

Snapshot Differences

These default arguments are applied when no custom settings are specified.

-

💡 If diffis not installed on the system, nf-test will print exepcted and found snapshots without highlighting differences.

+

💡 If diffis not installed on the system, nf-test will print exepcted and found snapshots without highlighting differences.

Customizing Diff Tool Arguments

Users have the flexibility to customize the arguments passed to the diff tool using an environment variable called NFT_DIFF_ARGS. This environment variable allows you to modify the way the diff tool behaves when comparing snapshots.

diff --git a/docs/cli/clean/index.html b/docs/cli/clean/index.html index 54b419fc..1f6506b2 100644 --- a/docs/cli/clean/index.html +++ b/docs/cli/clean/index.html @@ -16,7 +16,7 @@ - + diff --git a/docs/cli/coverage/index.html b/docs/cli/coverage/index.html index a11149f3..32daa674 100644 --- a/docs/cli/coverage/index.html +++ b/docs/cli/coverage/index.html @@ -16,7 +16,7 @@ - + diff --git a/docs/cli/generate/index.html b/docs/cli/generate/index.html index ef155894..d2839f8f 100644 --- a/docs/cli/generate/index.html +++ b/docs/cli/generate/index.html @@ -16,7 +16,7 @@ - + diff --git a/docs/cli/init/index.html b/docs/cli/init/index.html index c4c68e26..f339ab1f 100644 --- a/docs/cli/init/index.html +++ b/docs/cli/init/index.html @@ -16,7 +16,7 @@ - + diff --git a/docs/cli/list/index.html b/docs/cli/list/index.html index 2d54bf80..62468824 100644 --- a/docs/cli/list/index.html +++ b/docs/cli/list/index.html @@ -16,7 +16,7 @@ - + diff --git a/docs/cli/test/index.html b/docs/cli/test/index.html index db7ccf29..b2bf0215 100644 --- a/docs/cli/test/index.html +++ b/docs/cli/test/index.html @@ -16,7 +16,7 @@ - + diff --git a/docs/configuration/index.html b/docs/configuration/index.html index e72e256a..6af4495a 100644 --- a/docs/configuration/index.html +++ b/docs/configuration/index.html @@ -16,7 +16,7 @@ - + diff --git a/docs/getting-started/index.html b/docs/getting-started/index.html index 6ef99133..7c647558 100644 --- a/docs/getting-started/index.html +++ b/docs/getting-started/index.html @@ -16,7 +16,7 @@ - + diff --git a/docs/nftest_pipelines/index.html b/docs/nftest_pipelines/index.html index 3fa6c65f..f56d456a 100644 --- a/docs/nftest_pipelines/index.html +++ b/docs/nftest_pipelines/index.html @@ -12,7 +12,7 @@ - + diff --git a/docs/plugins/developing-plugins/index.html b/docs/plugins/developing-plugins/index.html index 75df71f7..03a006ec 100644 --- a/docs/plugins/developing-plugins/index.html +++ b/docs/plugins/developing-plugins/index.html @@ -16,7 +16,7 @@ - + diff --git a/docs/plugins/using-plugins/index.html b/docs/plugins/using-plugins/index.html index e034db73..100d0238 100644 --- a/docs/plugins/using-plugins/index.html +++ b/docs/plugins/using-plugins/index.html @@ -16,7 +16,7 @@ - + diff --git a/docs/running-tests/index.html b/docs/running-tests/index.html index ce0f1e59..5c31b11c 100644 --- a/docs/running-tests/index.html +++ b/docs/running-tests/index.html @@ -16,7 +16,7 @@ - + diff --git a/docs/testcases/global_variables/index.html b/docs/testcases/global_variables/index.html index b4ee4f8a..609b0583 100644 --- a/docs/testcases/global_variables/index.html +++ b/docs/testcases/global_variables/index.html @@ -16,7 +16,7 @@ - + diff --git a/docs/testcases/index.html b/docs/testcases/index.html index 7badab99..d8ada318 100644 --- a/docs/testcases/index.html +++ b/docs/testcases/index.html @@ -12,7 +12,7 @@ - + diff --git a/docs/testcases/nextflow_function/index.html b/docs/testcases/nextflow_function/index.html index 0d4fa727..238707c1 100644 --- a/docs/testcases/nextflow_function/index.html +++ b/docs/testcases/nextflow_function/index.html @@ -16,7 +16,7 @@ - + @@ -1423,7 +1423,7 @@

Syntax

}
-

💡 Script paths that start with ./ or ../ are considered relative paths. These paths are resolved based on the location of the test script. Relative paths are beneficial when you want to reference files or directories located within the same directory as your test script or in a parent directory. These paths provide a convenient way to access files without specifying the entire path.

+

💡 Script paths that start with ./ or ../ are considered relative paths. These paths are resolved based on the location of the test script. Relative paths are beneficial when you want to reference files or directories located within the same directory as your test script or in a parent directory. These paths provide a convenient way to access files without specifying the entire path.

Multiple Functions

If a Nextflow script contains multiple functions and you want to test them all in the same testsuite, you can override the function property in each test. For example:

diff --git a/docs/testcases/nextflow_pipeline/index.html b/docs/testcases/nextflow_pipeline/index.html index ccb0dd8a..c21aaced 100644 --- a/docs/testcases/nextflow_pipeline/index.html +++ b/docs/testcases/nextflow_pipeline/index.html @@ -16,7 +16,7 @@ - + diff --git a/docs/testcases/nextflow_process/index.html b/docs/testcases/nextflow_process/index.html index 7e53ec70..b0574035 100644 --- a/docs/testcases/nextflow_process/index.html +++ b/docs/testcases/nextflow_process/index.html @@ -16,7 +16,7 @@ - + @@ -1366,7 +1366,7 @@

Syntax

}
-

💡 Script paths that start with ./ or ../ are considered relative paths. These paths are resolved based on the location of the test script. Relative paths are beneficial when you want to reference files or directories located within the same directory as your test script or in a parent directory. These paths provide a convenient way to access files without specifying the entire path.

+

💡 Script paths that start with ./ or ../ are considered relative paths. These paths are resolved based on the location of the test script. Relative paths are beneficial when you want to reference files or directories located within the same directory as your test script or in a parent directory. These paths provide a convenient way to access files without specifying the entire path.

Assertions

The process object can be used in asserts to check its status or error messages.

diff --git a/docs/testcases/nextflow_workflow/index.html b/docs/testcases/nextflow_workflow/index.html index ad8742b1..e21df5d2 100644 --- a/docs/testcases/nextflow_workflow/index.html +++ b/docs/testcases/nextflow_workflow/index.html @@ -16,7 +16,7 @@ - + @@ -1366,7 +1366,7 @@

Syntax

}
-

💡 Script paths that start with ./ or ../ are considered relative paths. These paths are resolved based on the location of the test script. Relative paths are beneficial when you want to reference files or directories located within the same directory as your test script or in a parent directory. These paths provide a convenient way to access files without specifying the entire path.

+

💡 Script paths that start with ./ or ../ are considered relative paths. These paths are resolved based on the location of the test script. Relative paths are beneficial when you want to reference files or directories located within the same directory as your test script or in a parent directory. These paths provide a convenient way to access files without specifying the entire path.

Assertions

The workflow object can be used in asserts to check its status, error messages or traces.

diff --git a/docs/testcases/params/index.html b/docs/testcases/params/index.html index 31298d06..c5699440 100644 --- a/docs/testcases/params/index.html +++ b/docs/testcases/params/index.html @@ -16,7 +16,7 @@ - + diff --git a/docs/testcases/setup/index.html b/docs/testcases/setup/index.html index ef11bb94..2515f155 100644 --- a/docs/testcases/setup/index.html +++ b/docs/testcases/setup/index.html @@ -16,7 +16,7 @@ - + diff --git a/index.html b/index.html index 5fd4de2b..222f1de4 100644 --- a/index.html +++ b/index.html @@ -14,7 +14,7 @@ - + diff --git a/installation/index.html b/installation/index.html index 7958ea84..2a1f8dfb 100644 --- a/installation/index.html +++ b/installation/index.html @@ -16,7 +16,7 @@ - + diff --git a/resources/index.html b/resources/index.html index c0fb3c88..b74d9755 100644 --- a/resources/index.html +++ b/resources/index.html @@ -16,7 +16,7 @@ - + diff --git a/sitemap.xml.gz b/sitemap.xml.gz index a39daccec3235e9aa1e66e34a9e92d44c7413e35..549c605eeec88b47bc56a6013c01f1d10e45ae47 100644 GIT binary patch delta 13 Ucmb=gXP58h;Ar5}n8;oM02y%uh5!Hn delta 13 Ucmb=gXP58h;AprnHIcmn03A*QNdN!< diff --git a/tutorials/github-actions/index.html b/tutorials/github-actions/index.html index 1bcfa820..1de0486b 100644 --- a/tutorials/github-actions/index.html +++ b/tutorials/github-actions/index.html @@ -12,7 +12,7 @@ - + diff --git a/tutorials/index.html b/tutorials/index.html index 283b5ec9..57ff74f8 100644 --- a/tutorials/index.html +++ b/tutorials/index.html @@ -16,7 +16,7 @@ - +