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<div id="lab-meetings" class="section level1">
<h1>Lab Meetings</h1>
<p>For the Spring 2018 Semester, we will meet on Thursdays from 9-10am in room 467 Moore.</p>
<div id="goals" class="section level2">
<h2>Goals</h2>
<ul>
<li>Submit posters to Psi Chi conference on the “size matters” project, infant MOCO, PLAY.</li>
<li>Submit papers from infant MOCO, child/adult MOCO psychophysics</li>
<li>Analyze the child MOFO</li>
<li>Train on locomotion coding on PLAY pilots</li>
<li>Learn more about jupyter notebooks and python</li>
<li>Read more primary source papers</li>
<li>Turn data from “size matters” into a Shiny app</li>
<li>Write/edit LaTex posters in RMarkdown</li>
<li>Discuss new federal regulations, Common Rule</li>
</ul>
</div>
<div id="lets-read" class="section level2">
<h2>Let’s read</h2>
<ul>
<li>Finkelstein, A., Las, L., & Ulanovsky, N. (2016). 3-D Maps and Compasses in the Brain. <em>Annual Review of Neuroscience</em>, <em>39</em>, 171–196. Retrieved from <a href="http://dx.doi.org/10.1146/annurev-neuro-070815-013831" class="uri">http://dx.doi.org/10.1146/annurev-neuro-070815-013831</a></li>
<li>Egnor, S. E. R., & Branson, K. (2016). Computational Analysis of Behavior. <em>Annual Review of Neuroscience</em>, <em>39</em>, 217–236. Retrieved from <a href="http://dx.doi.org/10.1146/annurev-neuro-070815-013845" class="uri">http://dx.doi.org/10.1146/annurev-neuro-070815-013845</a></li>
<li>Kaplan, R., Schuck, N. W., & Doeller, C. F. (2017). The Role of Mental Maps in Decision-Making. <em>Trends in Neurosciences</em>, <em>40</em>(5), 256–259. Retrieved from <a href="http://dx.doi.org/10.1016/j.tins.2017.03.002" class="uri">http://dx.doi.org/10.1016/j.tins.2017.03.002</a></li>
<li>Rowland, D. C., Roudi, Y., Moser, M.-B., & Moser, E. I. (2016). Ten Years of Grid Cells. <em>Annual Review of Neuroscience</em>, <em>39</em>, 19–40. Retrieved from <a href="http://dx.doi.org/10.1146/annurev-neuro-070815-013824" class="uri">http://dx.doi.org/10.1146/annurev-neuro-070815-013824</a></li>
</ul>
</div>
<div id="schedule" class="section level2">
<h2>Schedule</h2>
<div id="breakfast" class="section level3">
<h3>2018-05-03 Breakfast</h3>
<ul>
<li>Lab breakfast 8:30am at E. College Waffle Shop</li>
</ul>
</div>
<div id="no-meeting" class="section level3">
<h3>2018-04-26 <strong>No Meeting</strong></h3>
</div>
<div id="thursday" class="section level3">
<h3>2018-04-19 Thursday</h3>
<ul>
<li>Attending:</li>
<li>Agenda
<ul>
<li>Create reproducible workflow for using <a href="https://www.sharelatex.com/">ShareLaTeX</a>
<ul>
<li>Learn how to <a href="https://www.sharelatex.com/blog/2015/02/10/shareLaTeX-github-sync.html">sync GitHub and ShareLaTeX</a></li>
</ul></li>
</ul></li>
</ul>
</div>
<div id="thursday-1" class="section level3">
<h3>2018-04-12 Thursday</h3>
<ul>
<li>Attending: Rick, Andrea, Sarah, Charmi, Alyssa</li>
<li>Agenda
<ul>
<li>Practice Poster Presentations
<ul>
<li>Infant brain responses differentiate between optic flow patterns and motion speeds - Alyssa</li>
<li>Reanalyzing Shared Data about Brains and Behavior - Charmi</li>
</ul></li>
<li>Review Databrary API - Package to interact with Databrary using R
<ul>
<li>devtools::load_all() - use to load tool</li>
<li>summarize_demog(volume = VOLNUMBER)</li>
<li>download videos</li>
<li>BUG: list_assets_by_type (type = “text”)</li>
<li>list_people: only show authorized people</li>
<li>instructions: github PLAY-behaviorome</li>
<li>can 2 different accounts be logged in at the same time?</li>
</ul></li>
</ul></li>
</ul>
</div>
<div id="thursday-2" class="section level3">
<h3>2018-03-22 Thursday</h3>
<ul>
<li>Attending: Rick, Andrea, Sarah, Charmi, Alyssa</li>
<li>Agenda
<ul>
<li>Posters for upcoming undergraduate conferences
<ul>
<li>Charmi and Alyssa will submit Friday</li>
</ul></li>
<li>Diagnose issue with PLAY pilot crawling and walking onsets (ROG)
<ul>
<li>Review videos for issues with locomotion.csv to confirm survey answers</li>
</ul></li>
<li>Give Rick feedback about <a href="https://github.com/PLAY-behaviorome/ibad-lets-PLAY">IBAD paper</a> plots.</li>
<li>Discuss: Ballard, D. H., Hayhoe, M. M., & Pelz, J. B. (1995). Memory representations in natural tasks. Journal of cognitive neuroscience, 7(1), 66–80. Retrieved from <a href="http://dx.doi.org/10.1162/jocn.1995.7.1.66" class="uri">http://dx.doi.org/10.1162/jocn.1995.7.1.66</a></li>
</ul></li>
</ul>
</div>
<div id="thursday-3" class="section level3">
<h3>2018-03-15 Thursday</h3>
<ul>
<li>Attending: Rick, Andrea, Sarah, Charmi, Amber, Alyssa</li>
<li>Agenda
<ul>
<li>Discuss:
<ul>
<li>Databrary User Growth Plot
<ul>
<li>How to create plot using R<br />
</li>
<li>Aesthetic feedback provided<br />
</li>
</ul></li>
<li><a href="https://www.youtube.com/watch?v=5_-NKRVn7IQ">Galaxy S9</a> - New Camera Phone with Iris</li>
<li>Fortenbaugh, F. C., Hicks, J. C., Hao, L., & Turano, K. A. (2006). High-speed navigators: Using more than what meets the eye. Journal of vision, 6(5), 565–579. Retrieved from <a href="http://dx.doi.org/10.1167/6.5.3" class="uri">http://dx.doi.org/10.1167/6.5.3</a><br />
</li>
<li><a href="https://rawgit.com/gilmore-lab/databrary-r-api/master/vignettes.html">databrary-r-api overview</a> - Shared data in one or more repositories that can be easily accessed, visualized, and analyzed because the data are in a common format. A new way interact with data on Databrary</li>
<li><a href="https://github.com/gilmore-lab/databrary-r-api">R commands to access Databrary</a></li>
</ul></li>
</ul></li>
<li>Next Meeting:
<ul>
<li>Read: Ballard, D. H., Hayhoe, M. M., & Pelz, J. B. (1995). Memory representations in natural tasks. Journal of cognitive neuroscience, 7(1), 66–80. Retrieved from <a href="http://dx.doi.org/10.1162/jocn.1995.7.1.66" class="uri">http://dx.doi.org/10.1162/jocn.1995.7.1.66</a></li>
</ul></li>
</ul>
</div>
<div id="thursday-4" class="section level3">
<h3>2018-03-01 Thursday</h3>
<ul>
<li>Attending: Rick, Andrea, Sarah, Charmi, Alyssa</li>
<li>Agenda
<ul>
<li>Discuss:
<ul>
<li>Talk about RIDIR NSF submission - for research infrastructure</li>
<li>Project Updates
<ul>
<li>Infant MOCO
<ul>
<li>outline paper<br />
</li>
<li>switch from R server to RStudio local<br />
</li>
</ul></li>
<li>Map of PLAY project locations
<ul>
<li>ggmap using census data<br />
</li>
<li>Create Shiny App - In progress</li>
</ul></li>
<li>PLAY pilot data survey results and workflow analysis to aid in future data collection<br />
</li>
</ul></li>
<li><a href="pdfs/gibson-1979-ch-2.pdf">Chapter 2</a> - Gibson, J. J. (2014). The Ecological Approach to Visual Perception: Classic Edition. Psychology Press.<br />
</li>
<li><a href="https://www.youtube.com/watch?v=5_-NKRVn7IQ">Galaxy S9</a> - New Camera Phone with Iris</li>
</ul></li>
</ul></li>
<li>Next Meeting: 3/15/2018
<ul>
<li>Pick K. Adolph paper and find related videos on Databrary - crawling vs. walking</li>
</ul></li>
</ul>
</div>
<div id="thursday-5" class="section level3">
<h3>2018-02-22 Thursday</h3>
<ul>
<li>Attending: Rick, Andrea, Sarah, Charmi, Amber, Quendresa, Alyssa<br />
</li>
<li>Agenda
<ul>
<li>Discuss
<ul>
<li>Watch ‘Torpedo Gannet Diving!’ Video</li>
<li>Lee, D. N., & Reddish, P. E. (1981). Plummeting gannets: a paradigm of ecological optics. Nature, 293, 293. Nature Publishing Group. Retrieved from <a href="http://dx.doi.org/10.1038/293293a0" class="uri">http://dx.doi.org/10.1038/293293a0</a></li>
<li><a href="https://youtu.be/1Cp1n_vPvYY" class="uri">https://youtu.be/1Cp1n_vPvYY</a></li>
</ul></li>
</ul></li>
<li>Next Meeting<br />
- Time to contact issues in different sports - Difference between aiming and steering, balance, object manipulation - Vision testing tools - Teller Acuity Cards</li>
<li>Next Meeting
<ul>
<li>Read <a href="pdfs/gibson-1979-ch-2.pdf">Chapter 2</a>: Gibson, J. J. (2014). The Ecological Approach to Visual Perception: Classic Edition. Psychology Press. Retrieved from <a href="https://market.android.com/details?id=book-8BSLBQAAQBAJ" class="uri">https://market.android.com/details?id=book-8BSLBQAAQBAJ</a></li>
</ul></li>
</ul>
</div>
<div id="thursday-6" class="section level3">
<h3>2018-02-15 Thursday</h3>
<ul>
<li>Attending: Rick, Andrea, Alyssa, Sarah, Amber, Charmi</li>
<li>Agenda
<ul>
<li>Discuss
<ul>
<li>Visual Acuity Paper: Nityananda, V., Tarawneh, G., Henriksen, S., Umeton, D., Simmons, A., & Read, J. C. A. (2018). A Novel Form of Stereo Vision in the Praying Mantis. Current biology: CB. Retrieved from <a href="http://dx.doi.org/10.1016/j.cub.2018.01.012" class="uri">http://dx.doi.org/10.1016/j.cub.2018.01.012</a></li>
<li>Vestibular motion</li>
<li><a href="http://sites.psu.edu/psichi/research-conference-2/">Psi Chi Conference</a>
<ul>
<li>Application due March 23rd at 4:00 pm - <a href="https://docs.google.com/document/d/1CBm5eAsiAbZv1Iol2dasNsdMb1KHkp4srFkl2pgE2vY/edit?usp=sharing">Pertinent Information</a></li>
<li>Draft after spring break</li>
</ul></li>
</ul></li>
</ul></li>
<li>Next Meeting
<ul>
<li>read: Lee, D. N., & Reddish, P. E. (1981). Plummeting gannets: a paradigm of ecological optics. Nature, 293, 293. Nature Publishing Group. Retrieved from <a href="http://dx.doi.org/10.1038/293293a0" class="uri">http://dx.doi.org/10.1038/293293a0</a></li>
<li>Discuss Teller Acuity Cards and Stereo Vision Tests</li>
</ul></li>
</ul>
</div>
<div id="thursday-7" class="section level3">
<h3>2018-02-08 Thursday</h3>
<ul>
<li>Attending: Rick, Andrea, Charmi, Amber, Alyssa, Sarah</li>
<li>Agenda
<ul>
<li>Discuss
<ul>
<li>Excerpt from Palmer chapter on <a href="pdfs/20180202145140744.pdf">Fourier analysis</a>.</li>
<li>Watch <a href="https://youtu.be/spUNpyF58BY">video</a></li>
<li>Rick’s <a href="https://psu-psychology.github.io/psy-525-vision-spring-2017/slides/2018-01-29-retinal-image.html#34">lecture notes</a> on Fourier analysis</li>
</ul></li>
</ul></li>
<li>Next Meeting
<ul>
<li>Read paper on Visual Acuity</li>
</ul></li>
</ul>
</div>
<div id="thursday-8" class="section level3">
<h3>2018-02-01 Thursday</h3>
<ul>
<li>Attending:</li>
<li>Agenda
<ul>
<li>Reports
<ul>
<li>Lab Dinner graduate recruit - Monday 2/12 @ 5:45 pm @ The Field</li>
</ul></li>
<li>Discuss
<ul>
<li>Jackson, A.F., & Bolger, D. J. (2014) The neurophysiological bases of EEG and EEG measurement: a review for the rest of us. <em>Psychophysiology</em>. 2014 Nov;51(11):1061-71. Retrieved from <a href="http://dx.doi.org/10.1111/psyp.12283" class="uri">http://dx.doi.org/10.1111/psyp.12283</a>. Epub 2014 Jul 17.</li>
</ul></li>
</ul></li>
<li>Next Meeting</li>
</ul>
</div>
<div id="thursday-9" class="section level3">
<h3>2018-01-25 Thursday</h3>
<ul>
<li>Agenda
<ul>
<li>Reports
<ul>
<li>Psi Chi dates
<ul>
<li>Deadlines: Application due <strong><em>March 23rd at 4:00 pm</em></strong></li>
<li>Conceptual or Empirical research application: Submit as an email attachment (MS Word document) to <a href="mailto:[email protected]">[email protected]</a> by March 23, 2018 by 6 PM.</li>
<li>Need to figure out what questions were more important in the domain in order to extract data from.</li>
<li>Psi Chi Conference Date: <strong>April 12th 2-4:30pm</strong></li>
</ul></li>
<li><a href="https://undergradresearch.psu.edu/exhibition/">Undergrad conference dates</a>
<ul>
<li>Poster Presentation—traditional research poster</li>
<li>Performance—Limited to 5 minutes</li>
<li>Oral Presentation (1 slide/visual, 5 minutes)—students will present their research/creative work in 5 minutes using 1</li>
<li>PowerPoint slide or 1 visual display (i.e. an original piece of visual art)</li>
<li>Entries will be accepted <strong><em>February 12-March 28, 2018</em></strong></li>
<li>Poster Presentation Date: <strong>April 18th, 5-8pm</strong></li>
</ul></li>
</ul></li>
<li>Discuss: Cohen, M. X. (2017). Where Does EEG Come From and What Does It Mean? <em>Trends in Neurosciences</em>, <em>40</em>(4), 208–218. Retrieved from <a href="http://dx.doi.org/10.1016/j.tins.2017.02.004" class="uri">http://dx.doi.org/10.1016/j.tins.2017.02.004</a>. | <a href="lab-mtgs/notes-cohen-2017.html">Notes</a> |</li>
</ul></li>
<li>Next Meeting
<ul>
<li>Jackson, A.F., & Bolger, D. J. (2014) The neurophysiological bases of EEG and EEG measurement: a review for the rest of us. <em>Psychophysiology</em>. 2014 Nov;51(11):1061-71. Retrieved from <a href="http://dx.doi.org/10.1111/psyp.12283" class="uri">http://dx.doi.org/10.1111/psyp.12283</a>. Epub 2014 Jul 17.</li>
<li>Talk about the grant that Dr. Gilmore is writing about testing different brain measuring equipment</li>
</ul></li>
</ul>
</div>
<div id="thursday-10" class="section level3">
<h3>2018-01-18 Thursday</h3>
<ul>
<li>Agenda
<ul>
<li>Goal-setting</li>
<li>Assign Psi Chi submission info and report (Sarah)</li>
<li>Info about undergrad research conference (Charmi)</li>
<li>Discuss <a href="http://jupyter.org">jupyter notebooks</a> and Rick’s preliminary work on <a href="https://github.com/tyarkoni/pliers"><code>pliers</code></a>, a tool to apply computer vision/machine learning tools to images, video, and audio.</li>
</ul></li>
<li>Next meeting
<ul>
<li>Cohen, M. X. (2017). Where Does EEG Come From and What Does It Mean? <em>Trends in Neurosciences</em>, 40(4), 208–218. Retrieved from <a href="http://dx.doi.org/10.1016/j.tins.2017.02.004" class="uri">http://dx.doi.org/10.1016/j.tins.2017.02.004</a></li>
</ul></li>
</ul>
</div>
</div>
</div>
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