hclass_te

Work on hierarchical classification of transposable elements

Code

mrmr_feature_selection.ipynb

• Jupyter notebook with R kernel for using mRMRe package to perform selection of TE kmers for classification
• Dependencies:
  • Jupyter: http://jupyter.org/install
  • IRkernel: https://github.com/IRkernel/IRkernel
  • mRMRe package: https://cran.r-project.org/web/packages/mRMRe/index.html