diff --git a/__test_files__/__test_model__/.DS_Store b/__test_files__/__test_model__/.DS_Store index 1b1321c..a30c628 100644 Binary files a/__test_files__/__test_model__/.DS_Store and b/__test_files__/__test_model__/.DS_Store differ diff --git a/__test_files__/__test_model__/Model/checkpoint b/__test_files__/__test_model__/Model/checkpoint deleted file mode 100644 index 5b79926..0000000 --- a/__test_files__/__test_model__/Model/checkpoint +++ /dev/null @@ -1,2 +0,0 @@ -model_checkpoint_path: "/Users/mathieuboudreau/neuropoly/github/axondeepseg/test/__test_files__/__test_training_files__/Model/model.ckpt" -all_model_checkpoint_paths: "/Users/mathieuboudreau/neuropoly/github/axondeepseg/test/__test_files__/__test_training_files__/Model/model.ckpt" diff --git a/__test_files__/__test_model__/Model/config_network.json b/__test_files__/__test_model__/Model/config_network.json deleted file mode 100644 index eae8397..0000000 --- a/__test_files__/__test_model__/Model/config_network.json +++ /dev/null @@ -1,77 +0,0 @@ -{ - "n_classes": 3, - "thresholds": [ - 0, - 0.2, - 0.8 - ], - "trainingset_patchsize": 256, - "trainingset": "SEM_3c_256", - "batch_size": 2, - "save_epoch_freq": 1, - "depth": 2, - "convolution_per_layer": [ - 2, - 2 - ], - "size_of_convolutions_per_layer": [ - [ - 3, - 3 - ], - [ - 3, - 3 - ] - ], - "features_per_convolution": [ - [ - [ - 1, - 5 - ], - [ - 5, - 5 - ] - ], - [ - [ - 5, - 10 - ], - [ - 10, - 10 - ] - ] - ], - "downsampling": "maxpooling", - "dropout": 0.75, - "learning_rate": 0.001, - "learning_rate_decay_activate": true, - "learning_rate_decay_period": 4, - "learning_rate_decay_type": "polynomial", - "learning_rate_decay_rate": 0.99, - "batch_norm_activate": true, - "batch_norm_decay_decay_activate": true, - "batch_norm_decay_starting_decay": 0.7, - "batch_norm_decay_ending_decay": 0.9, - "batch_norm_decay_decay_period": 16000, - "weighted_cost-activate": true, - "weighted_cost-balanced_activate": true, - "weighted_cost-balanced_weights": [ - 1.1, - 1, - 1.3 - ], - "weighted_cost-boundaries_sigma": 2, - "weighted_cost-boundaries_activate": false, - "da-type": "all", - "da-2-random_rotation-activate": false, - "da-5-noise_addition-activate": false, - "da-3-elastic-activate": true, - "da-0-shifting-activate": true, - "da-4-flipping-activate": true, - "da-1-rescaling-activate": false -} \ No newline at end of file diff --git a/__test_files__/__test_model__/Model/evolution.pkl b/__test_files__/__test_model__/Model/evolution.pkl deleted file mode 100644 index e9a3748..0000000 Binary files a/__test_files__/__test_model__/Model/evolution.pkl and /dev/null differ diff --git a/__test_files__/__test_model__/Model/evolution_stats.pkl b/__test_files__/__test_model__/Model/evolution_stats.pkl deleted file mode 100644 index 683e63c..0000000 Binary files a/__test_files__/__test_model__/Model/evolution_stats.pkl and /dev/null differ diff --git a/__test_files__/__test_model__/Model/model.ckpt.data-00000-of-00001 b/__test_files__/__test_model__/Model/model.ckpt.data-00000-of-00001 deleted file mode 100644 index bc16618..0000000 Binary files a/__test_files__/__test_model__/Model/model.ckpt.data-00000-of-00001 and /dev/null differ diff --git a/__test_files__/__test_model__/Model/model.ckpt.index b/__test_files__/__test_model__/Model/model.ckpt.index deleted file mode 100644 index c323be4..0000000 Binary files a/__test_files__/__test_model__/Model/model.ckpt.index and /dev/null differ diff --git a/__test_files__/__test_model__/Model/model.ckpt.meta b/__test_files__/__test_model__/Model/model.ckpt.meta deleted file mode 100644 index c879936..0000000 Binary files a/__test_files__/__test_model__/Model/model.ckpt.meta and /dev/null differ diff --git a/__test_files__/__test_model__/Model/report.txt b/__test_files__/__test_model__/Model/report.txt deleted file mode 100644 index 2dd996a..0000000 --- a/__test_files__/__test_model__/Model/report.txt +++ /dev/null @@ -1,21 +0,0 @@ - - ----Savings--- - Model saved in : /Users/mathieuboudreau/neuropoly/github/axondeepseg/test/__test_files__/__test_training_files__/Model - ----PARAMETERS--- -learning_rate : 0.001; - batch_size : 2; - depth : 2; - epoch_size: 2; - dropout : 0.75; - (if model restored) restored_model :None -5763 - - ----Intermediary results--- - ----- - Last epoch: 1 - Accuracy: 0.2949371337890625; - Loss: 1.1041648387908936; \ No newline at end of file diff --git a/__test_files__/__test_model__/models/model_empty_ensemble/fold_0/.empty b/__test_files__/__test_model__/models/model_empty_ensemble/fold_0/.empty new file mode 100644 index 0000000..e69de29 diff --git a/__test_files__/__test_model__/models/model_empty_ensemble/fold_1/.empty b/__test_files__/__test_model__/models/model_empty_ensemble/fold_1/.empty new file mode 100644 index 0000000..e69de29 diff --git a/__test_files__/__test_model__/models/model_empty_ensemble/fold_2/.empty b/__test_files__/__test_model__/models/model_empty_ensemble/fold_2/.empty new file mode 100644 index 0000000..e69de29 diff --git a/__test_files__/__test_model__/models/model_empty_ensemble/fold_4/.empty b/__test_files__/__test_model__/models/model_empty_ensemble/fold_4/.empty new file mode 100644 index 0000000..e69de29