From 3f90a15f411b602f9c421e17779c909eaa85e475 Mon Sep 17 00:00:00 2001 From: Dave Clements Date: Mon, 4 Oct 2021 12:19:37 -0700 Subject: [PATCH] Fixing more /src and index.md links. --- content/admin/internals/data-model/index.md | 2 +- content/admin/tools/data-managers/index.md | 2 +- .../index.md | 2 +- content/blog/2017-10-10-scipy-galaxy/index.md | 2 +- content/blog/2017-10-5000-pubs/index.md | 2 +- content/blog/2017-10-a-blog-is-born/index.md | 2 +- content/blog/2017-12-galaksio/index.md | 2 +- .../blog/2018-06-training-material/index.md | 2 +- .../blog/2018-08-cotm-pablo-moreno/index.md | 2 +- .../blog/2018-09-cotm-carrie-ganote/index.md | 2 +- .../blog/2018-10-cotm-yvan-le-bras/index.md | 2 +- .../2018-11-cotm-saskia-hiltemann/index.md | 2 +- .../blog/2018-12-cotm-simon-gladman/index.md | 2 +- content/blog/2019-02-cvmfs/index.md | 2 +- content/blog/2019-04-gcc2019/index.md | 2 +- content/blog/2019-04-gcp/index.md | 20 +- content/blog/2019-05-gcr/index.md | 6 +- 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content/use/usegalaxy-org/index.md | 2 +- content/use/usmi-galaxy-demonstrator/index.md | 2 +- content/use/vinther-lab/index.md | 2 +- content/use/viramp/index.md | 2 +- content/use/workflow4metabolomics/index.md | 2 +- 389 files changed, 1073 insertions(+), 1073 deletions(-) diff --git a/content/admin/internals/data-model/index.md b/content/admin/internals/data-model/index.md index 511d83251a..a6393f586d 100644 --- a/content/admin/internals/data-model/index.md +++ b/content/admin/internals/data-model/index.md @@ -6,7 +6,7 @@ TODO: Describe data model. For now, have a picture! Marten: I use DB Visualizer for the Galaxy's database and it works pretty well. (http://www.dbvis.com/)
-Galaxy Data Model; click to enlarge +Galaxy Data Model; click to enlarge [Galaxy Data Model; click to enlarge](/admin/internals/data-model/galaxy_schema.png).
diff --git a/content/admin/tools/data-managers/index.md b/content/admin/tools/data-managers/index.md index a49c21aac2..a9b573d718 100644 --- a/content/admin/tools/data-managers/index.md +++ b/content/admin/tools/data-managers/index.md @@ -18,7 +18,7 @@ The Data Manager framework supports any kind of built-in ("pre-cached") data tha # Graphical Overview of Interplay between Built-in Data and Galaxy Tools - + # List of pages in this category diff --git a/content/blog/2017-10-05-elixir-galaxy-community/index.md b/content/blog/2017-10-05-elixir-galaxy-community/index.md index 3626f9e5be..d50a3575ab 100644 --- a/content/blog/2017-10-05-elixir-galaxy-community/index.md +++ b/content/blog/2017-10-05-elixir-galaxy-community/index.md @@ -2,7 +2,7 @@ date: '2017-10-05' title: "ELIXIR establishes a new official Community for Galaxy" tease: "" -image: /src/images/logos/ElixirNoTextLogo.png +image: /images/logos/ElixirNoTextLogo.png authors: "Frederik Coppens, Gildas Le Corguillé, Björn Grüning" --- diff --git a/content/blog/2017-10-10-scipy-galaxy/index.md b/content/blog/2017-10-10-scipy-galaxy/index.md index 2b9018e8ef..305825ebd3 100644 --- a/content/blog/2017-10-10-scipy-galaxy/index.md +++ b/content/blog/2017-10-10-scipy-galaxy/index.md @@ -3,7 +3,7 @@ date: '2017-10-10' title: "SciPy and scikit-learn integration into Galaxy" tease: "" authors: "Björn Grüning" -image: /src/blog/2017-10-10-scipy-galaxy/sci-py-kit-learn.png +image: /blog/2017-10-10-scipy-galaxy/sci-py-kit-learn.png --- [Numpy](http://www.numpy.org), [SciPy](https://www.scipy.org), [scikit-learn](http://scikit-learn.org), diff --git a/content/blog/2017-10-5000-pubs/index.md b/content/blog/2017-10-5000-pubs/index.md index 9d81016130..a984e7b643 100644 --- a/content/blog/2017-10-5000-pubs/index.md +++ b/content/blog/2017-10-5000-pubs/index.md @@ -2,7 +2,7 @@ date: '2017-10-16' title: "Galaxy: the first 5,000 pubs " tease: "The Galaxy Publication Library hits a milestone" -image: /src/images/logos/zotero-logo-small-trans.png +image: /images/logos/zotero-logo-small-trans.png authors: "Dave Clements" --- diff --git a/content/blog/2017-10-a-blog-is-born/index.md b/content/blog/2017-10-a-blog-is-born/index.md index fcd3d56ff7..6be0dd1632 100644 --- a/content/blog/2017-10-a-blog-is-born/index.md +++ b/content/blog/2017-10-a-blog-is-born/index.md @@ -2,7 +2,7 @@ date: '2017-10-04' title: "Welcome to the Galactic Blog" tease: "It needs you" -image: /src/images/galaxy-logos/galactic-blog-400.png +image: /images/galaxy-logos/galactic-blog-400.png authors: "Dave Clements" --- diff --git a/content/blog/2017-12-galaksio/index.md b/content/blog/2017-12-galaksio/index.md index 20d9786c47..5af9e4a0e1 100644 --- a/content/blog/2017-12-galaksio/index.md +++ b/content/blog/2017-12-galaksio/index.md @@ -4,7 +4,7 @@ title: "Galaksio: a Galaxy user interface focused on running prepared workflows" tease: "Make your workflows more accessible to non-bioinformaticians" authors: "Tomas Klingström" external_url: "" -image: "/src/images/logos/galaksio_logo.png" +image: "/images/logos/galaksio_logo.png" source_blog_url: "" source_blog: --- diff --git a/content/blog/2018-06-training-material/index.md b/content/blog/2018-06-training-material/index.md index caa039898e..3f41b947ca 100644 --- a/content/blog/2018-06-training-material/index.md +++ b/content/blog/2018-06-training-material/index.md @@ -2,7 +2,7 @@ date: '2018-06-15' title: "A fruitful year for the Galaxy Training material" authors: "Bérénice Batut, on behalf of the Galaxy Training Network" -image: "/src/blog/2018-06-training-material/cover_art.png" +image: "/blog/2018-06-training-material/cover_art.png" --- The Galaxy Training Network has developed an infrastructure to deliver interactive training based on Galaxy: one central place ([https://training.galaxyproject.org](https://training.galaxyproject.org)) to aggregate training materials covering many current research topics. diff --git a/content/blog/2018-08-cotm-pablo-moreno/index.md b/content/blog/2018-08-cotm-pablo-moreno/index.md index 4ee3d7a075..fb0540dd7f 100644 --- a/content/blog/2018-08-cotm-pablo-moreno/index.md +++ b/content/blog/2018-08-cotm-pablo-moreno/index.md @@ -2,7 +2,7 @@ date: '2018-08-01' title: "Contributor of the Month: Pablo Moreno" authors: "Björn Grüning" -image: "/src/blog/2018-08-cotm-pablo-moreno/pablo-moreno.jpg" +image: "/blog/2018-08-cotm-pablo-moreno/pablo-moreno.jpg" --- **Welcome to the first ever Galaxy Contributor of the Month posting!** diff --git a/content/blog/2018-09-cotm-carrie-ganote/index.md b/content/blog/2018-09-cotm-carrie-ganote/index.md index a19bb0cd5f..e105db9d16 100644 --- a/content/blog/2018-09-cotm-carrie-ganote/index.md +++ b/content/blog/2018-09-cotm-carrie-ganote/index.md @@ -2,7 +2,7 @@ date: '2018-09-05' title: "Contributor of the Month: Carrie Ganote" authors: "Björn Grüning" -image: "/src/blog/2018-09-cotm-carrie-ganote/carrie-ganote.png" +image: "/blog/2018-09-cotm-carrie-ganote/carrie-ganote.png" --- The Galaxy ecosystem is a direct result of the Galaxy community and the contributions and involvement of community members. The community makes it all work in innumerable ways, including support, training and tutorial development, talks, posters, documentation, issue reporting, feature requests, tool publishing, coding, and Galaxy server, cloud, and appliance support. diff --git a/content/blog/2018-10-cotm-yvan-le-bras/index.md b/content/blog/2018-10-cotm-yvan-le-bras/index.md index 3d970df627..295f8e5e20 100644 --- a/content/blog/2018-10-cotm-yvan-le-bras/index.md +++ b/content/blog/2018-10-cotm-yvan-le-bras/index.md @@ -3,7 +3,7 @@ date: '2018-10-01' title: "Contributor of the Month: Yvan Le Bras" authors: "Björn Grüning" tease: "Citizen Science and Galaxy for Ecology" -image: "/src/images/photos/yvanlebras.png" +image: "/images/photos/yvanlebras.png" --- This month we welcome Yvan Le Bras, also called the magic Yvan ([@yvanlebras](https://github.com/yvanlebras)) as our *Galaxy contributor of the Month!* Yvan is a long time community member and PI of the GalaxyE project for Ecology data science. Yvan thanks for doing this interview with us, we are looking forward to learn more about you and your work! diff --git a/content/blog/2018-11-cotm-saskia-hiltemann/index.md b/content/blog/2018-11-cotm-saskia-hiltemann/index.md index 4c4e64a59b..9ba27126e8 100644 --- a/content/blog/2018-11-cotm-saskia-hiltemann/index.md +++ b/content/blog/2018-11-cotm-saskia-hiltemann/index.md @@ -2,7 +2,7 @@ date: '2018-11-01' title: "Contributor of the Month: Saskia Hiltemann" authors: "Martin Čech" -image: "/src/blog/2018-11-cotm-saskia-hiltemann/saskia-hiltemann.png" +image: "/blog/2018-11-cotm-saskia-hiltemann/saskia-hiltemann.png" --- This month we welcome Saskia Hiltemann (Twitter: [@shiltemann](https://twitter.com/shiltemann), GitHub: [@shiltemann](https://github.com/shiltemann)) as our Galaxy contributor of the Month! Saskia is a bioinformatician and a PhD student working in metagenomics at Rotterdam’s Erasmus Medical Center in the Netherlands, a core member of the [Intergalactic Utilities Commission](https://galaxyproject.org/iuc/), and one of the two primary creators of the [Galaxy Training Framework](https://training.galaxyproject.org/) ([published](https://doi.org/10.1016/j.cels.2018.05.012) in *Cell Systems*). diff --git a/content/blog/2018-12-cotm-simon-gladman/index.md b/content/blog/2018-12-cotm-simon-gladman/index.md index 4e65b98d1e..592abbc133 100644 --- a/content/blog/2018-12-cotm-simon-gladman/index.md +++ b/content/blog/2018-12-cotm-simon-gladman/index.md @@ -2,7 +2,7 @@ date: '2018-12-12' title: "Contributor of the Month: Simon Gladman" authors: "Martin Čech" -image: "/src/blog/2018-12-cotm-simon-gladman/simon_small.jpg" +image: "/blog/2018-12-cotm-simon-gladman/simon_small.jpg" --- This month we welcome Simon Gladman (Twitter: [@SimonGladman1](https://twitter.com/SimonGladman1), GitHub: [@slugger70](https://github.com/slugger70)) as our Galaxy contributor of the Month! Simon works at the [University of Melbourne](https://www.unimelb.edu.au/) and is one of the developers of the [Genomics Virtual Laboratory](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4621043/) cloud image. Simon is a firefighter, cheesemaker, pillar of the [Galaxy Australia](https://usegalaxy.org.au/), and an overall jolly good fellow. diff --git a/content/blog/2019-02-cvmfs/index.md b/content/blog/2019-02-cvmfs/index.md index fceff8a3af..fc2950771f 100644 --- a/content/blog/2019-02-cvmfs/index.md +++ b/content/blog/2019-02-cvmfs/index.md @@ -3,7 +3,7 @@ date: '2019-02-28' title: "Interview with Nate Coraor: CVMFS & Galaxy" authors: "Mo Heydarian" tease: "Find out about Galaxy's favorite filesystem" -image: "/src/blog/2019-02-cvmfs/Nate_face.jpeg" +image: "/blog/2019-02-cvmfs/Nate_face.jpeg" --- This month we interviewed [Nate Coraor](https://github.com/natefoo) of the Galaxy Team to learn about what CVMFS is and how it is being used for Galaxy. diff --git a/content/blog/2019-04-gcc2019/index.md b/content/blog/2019-04-gcc2019/index.md index 008af0cfd1..7a06123520 100644 --- a/content/blog/2019-04-gcc2019/index.md +++ b/content/blog/2019-04-gcc2019/index.md @@ -3,7 +3,7 @@ date: '2019-04-02' title: "A sneak peak at GCC2019" authors: "Björn Grüning" tease: "New scheduling format this year" -image: "/src/blog/2019-04-gcc2019/bjorn-gcc2017.jpg" +image: "/blog/2019-04-gcc2019/bjorn-gcc2017.jpg" --- As you probably know GCC2019 will be held in Freiburg, Germany, from 1-6 July. Like [previous Galaxy Community Conferences](https://galaxyproject.org/gcc/), GCC2019 will [feature](https://gcc2019.sched.com) keynotes, accepted talks, posters, and demos, birds-of-a-feather gatherings, multiple days of collaborative work, and plenty of opportunities to network with your fellow data-intensive researchers and practitioners. If you are working in data-intensive life science, there is no better place to be. diff --git a/content/blog/2019-04-gcp/index.md b/content/blog/2019-04-gcp/index.md index c1feca1b4f..215e107c81 100644 --- a/content/blog/2019-04-gcp/index.md +++ b/content/blog/2019-04-gcp/index.md @@ -3,7 +3,7 @@ date: '2019-04-15' title: "Building up support for the Google Cloud Platform in Galaxy" authors: "Enis Afgan and Vahid Jalili" tease: "Get on the cloud, Google Cloud!" -image: "/src/blog/2019-04-gcp/ggcp.png" +image: "/blog/2019-04-gcp/ggcp.png" highlight: true --- @@ -81,17 +81,17 @@ Having restarted Galaxy, ObjectStore will persist all the new datasets on the given GCS bucket. For instance, in the following figure we show uploading a new dataset to Galaxy. - + Galaxy data upload - + Galaxy data The uploaded dataset is persisted on the given GCS bucket, as shown in the following figure. -
+
Galaxy data
@@ -107,7 +107,7 @@ https://launch.usegalaxy.org/ and select CloudMan 2.0 appliance from the list. The CloudMan 2.0 appliance is currently a placeholder for launching the containerized version of Galaxy that was described above. -
+
CloudLaunch landing
@@ -115,10 +115,10 @@ Follow the launch wizard to create your new instance. If you do not already have the required Google cloud credentials, check out the documentation here: https://www.galaxyproject.org/admin/objectstore/gce/#create-a-service-account. - + CloudLaunch wizard 1 - + CloudLaunch wizard 2 @@ -130,10 +130,10 @@ username and the password you supplied in CloudLaunch. From there, you can observe the status of the machine and, after a few more minutes, access Galaxy to use it for some of the task suggested above. - + CloudMan status - + Galaxy CloudMan @@ -142,7 +142,7 @@ Galaxy configurations directly from CloudMan. Making yourself a Galaxy Admin is one idea here that translates to the ability to install additional tools in Galaxy. -
+
CloudMan config
diff --git a/content/blog/2019-05-gcr/index.md b/content/blog/2019-05-gcr/index.md index 593e26caca..c29d764d13 100644 --- a/content/blog/2019-05-gcr/index.md +++ b/content/blog/2019-05-gcr/index.md @@ -3,7 +3,7 @@ date: '2019-05-30' title: "Enabling cloud bursting for Galaxy" authors: "Enis Afgan and Nuwan Goonasekera" tease: "Expand your compute horizons." -image: "/src/blog/2019-05-gcr/gcr.png" +image: "/blog/2019-05-gcr/gcr.png" highlight: true --- @@ -108,7 +108,7 @@ capacity, just delete the machines from CloudLaunch. In the following screenshots, we're using the Google Cloud Platform to add a machine. Note that you can also mix which providers you use for your workers. -
+
Running instance
@@ -123,7 +123,7 @@ a job submitted on a local laptop was sent to a remote GalaxyCloudRunner instance running on GCP where Pulsar automatically installs the necessary tools via Conda and runs the job via an embedded Slurm job manager. -
+
Launch page 1
diff --git a/content/blog/2019-07-galaxy-resources/index.md b/content/blog/2019-07-galaxy-resources/index.md index 73416eaf7e..cd8e0ee6ba 100644 --- a/content/blog/2019-07-galaxy-resources/index.md +++ b/content/blog/2019-07-galaxy-resources/index.md @@ -3,7 +3,7 @@ date: '' title: "nn Galaxy Resources You Should Know About - 2019 Edition" tease: "Resources that will help you use Galaxy in your research" authors: "Dave Clements, ..." -image: "/src/images/galaxy-logos/galactic-blog-400.png" +image: "/images/galaxy-logos/galactic-blog-400.png" --- Galaxy is a platform, and a community, and a sprawling ecosystem of related projects, efforts, and resources. And, it's hard to keep track of all of it. diff --git a/content/blog/2020-02-gvl5-beta/index.md b/content/blog/2020-02-gvl5-beta/index.md index 1fbd44b93a..1f6996867b 100644 --- a/content/blog/2020-02-gvl5-beta/index.md +++ b/content/blog/2020-02-gvl5-beta/index.md @@ -3,7 +3,7 @@ date: '2020-02-14' title: "With Love: The All-new GVL 5.0 (beta)" authors: "Enis Afgan, Nuwan Goonasekera, Alexandru Mahmoud, Alex Ostrovsky, the GVL and Galaxy teams" tease: "Now more reliable, with better security, and with new features." -image: "/src/blog/2020-02-gvl5-beta/gvl-logo-landscape-2018.svg" +image: "/blog/2020-02-gvl5-beta/gvl-logo-landscape-2018.svg" highlight: true --- @@ -31,7 +31,7 @@ end-users, or researchers (see section “Looking Ahead”). Together, the new platform enables a more robust deployment process, a more reliable Galaxy service, improved system security, and new user features. -
+
GVL login
@@ -43,7 +43,7 @@ Getting access to a GVL instance is accomplished by launching your own instance A key feature of the GVL v5.0 is its uniform availability on at least 4 cloud providers, up from just 2 supported by the previous GVL. By combining the [CloudBridge library](http://cloudbridge.cloudve.org/), which provides an abstraction over differences in cloud providers, with software containers, it is now possible to launch an identical version of the GVL on Amazon, Google, Jetstream, and NeCTAR clouds (Azure support is pending). Choosing which provider you want to use is as simple as selecting the appropriate provider from the _Target_ dropdown in CloudLaunch. -
+
Multi-cloud selection
@@ -53,7 +53,7 @@ The GVL v5.0 also comes with an all-new implementation of CloudMan. CloudMan is Specifically for Galaxy, CloudMan offers a graphical management interface for Galaxy configuration files. Changing values of `galaxy.yml` or `job_conf.xml` for example can now be accomplished with a visual editor made available within the web browser. Adding new configuration files is also supported. Importantly, all configuration changes are performed with zero-downtime, so when you change a configuration value that requires a process restart, Galaxy will continue to be available and serve user requests during this entire period without users experiencing service disruption. An erroneous configuration can also be rolled back with the click of a button, as all configuration changes are versioned and tracked. Overall, we believe this makes Galaxy administration more accessible while retaining the benefits of a scripted configuration management approach. With this setup, for example, it is possible to manually edit a configuration file without having to setup and use a tool such as Ansible. Meanwhile, Helm will ensure the changes are tracked and can be reversed in case of an undesirable change. -
+
Visual Galaxy configuration via CloudMan
@@ -65,7 +65,7 @@ Since cloud computing became available, the ability to dynamically scale availab When should you scale? CloudMan now comes with a customizable status dashboard that monitors system status and allows you to react to the current load. By default, there are two dashboards: a system dashboard and a Galaxy dashboard. The system dashboard provides an overview of system resources, such as CPU and memory usage while the Galaxy dashboard provides insight into Galaxy metrics, such as the number of currently running jobs and distribution of tools used. The dashboard can be customized via [Grafana](https://grafana.com/) so the world is your oyster. -
+
CloudMan cluster metrics dashboard
@@ -77,7 +77,7 @@ GVL v5.0 also implements improved security practices. The authentication to the It is now possible to launch GVL instances on any supported cloud with an automatically signed SSL certificate so all the traffic to and from the instance is encrypted. The only requirements are you either have cloud DNS available on your cloud, in which case a DNS name can be automatically assigned for you, or you can pre-map a DNS name to the instance IP address yourself. During launch, select the “Cloud DNS” option and assign a domain name, or if your cloud provider does not support it, select the “Manually Specify” option, in which case you must map the DNS to a floating IP yourself before launching the cluster. CloudMan will take care of the rest to setup a valid SSL certificate that will be automatically renewed before it expires. -
+
SSL certificate
diff --git a/content/blog/2020-04-gvl5-beta2/index.md b/content/blog/2020-04-gvl5-beta2/index.md index 1e428010da..ef87d5d210 100644 --- a/content/blog/2020-04-gvl5-beta2/index.md +++ b/content/blog/2020-04-gvl5-beta2/index.md @@ -3,7 +3,7 @@ date: '2020-04-24' title: "GVL 5.0-beta2 release" authors: "Alexandru Mahmoud, Nuwan Goonasekera, Luke Sargent, Enis Afgan" tease: "30% faster and single sign-on, ohh my" -image: "/src/blog/2020-02-gvl5-beta/gvl-logo-landscape-2018.svg" +image: "/blog/2020-02-gvl5-beta/gvl-logo-landscape-2018.svg" highlight: true --- diff --git a/content/blog/2020-06-gvl5-beta3/index.md b/content/blog/2020-06-gvl5-beta3/index.md index 5bcbd14090..70f0962d99 100644 --- a/content/blog/2020-06-gvl5-beta3/index.md +++ b/content/blog/2020-06-gvl5-beta3/index.md @@ -3,7 +3,7 @@ date: '2020-06-22' title: "Multi-tenant, multi-project GVL with Galaxy, Jupyter, Terminal, and RStudio" authors: "Alexandru Mahmoud, Nuwan Goonasekera, Enis Afgan" tease: "Complete analysis on one platform, including training and collaboration" -image: "/src/blog/2020-02-gvl5-beta/gvl-logo-landscape-2018.svg" +image: "/blog/2020-02-gvl5-beta/gvl-logo-landscape-2018.svg" highlight: true --- @@ -46,7 +46,7 @@ can run differentiated toolsets, be supported by different cloud allocations, or be made available to targeted users.
- +
@@ -77,7 +77,7 @@ access to those applications and can install any additional packages within those applications that are needed for the analysis.
- +
diff --git a/content/blog/2020-07-gvl5-beta4/index.md b/content/blog/2020-07-gvl5-beta4/index.md index af368514bc..e9c31c4fc4 100644 --- a/content/blog/2020-07-gvl5-beta4/index.md +++ b/content/blog/2020-07-gvl5-beta4/index.md @@ -3,7 +3,7 @@ date: '2020-07-16' title: "GVL 5.0-beta4: data browser, project-level isolation, and Galaxy 20.05" authors: "Nuwan Goonasekera, Alexandru Mahmoud, Mohamad Safadieh, Enis Afgan" tease: "The GVL workbench now integrated through data" -image: "/src/blog/2020-02-gvl5-beta/gvl-logo-landscape-2018.svg" +image: "/blog/2020-02-gvl5-beta/gvl-logo-landscape-2018.svg" highlight: true --- diff --git a/content/blog/2020-08-10k-pubs/index.md b/content/blog/2020-08-10k-pubs/index.md index 6edf3fc89b..f3d9555b23 100644 --- a/content/blog/2020-08-10k-pubs/index.md +++ b/content/blog/2020-08-10k-pubs/index.md @@ -2,7 +2,7 @@ date: '2020-08-26' title: "Galaxy: the first 10,000 pubs " tease: "The Galaxy Publication Library hits a milestone" -image: /src/images/logos/zotero-logo-small-trans.png +image: /images/logos/zotero-logo-small-trans.png authors: "Dave Clements" --- diff --git a/content/blog/2021-05-galaxy-helm-chart-v4/index.md b/content/blog/2021-05-galaxy-helm-chart-v4/index.md index 4e8c9843ed..268e624963 100644 --- a/content/blog/2021-05-galaxy-helm-chart-v4/index.md +++ b/content/blog/2021-05-galaxy-helm-chart-v4/index.md @@ -45,7 +45,7 @@ interesting to explore options for retrieving reference data using a similar approach and entirely eliminate the dependency on CVMFS.
- +
![](./no-cvmfs.png) diff --git a/content/careers/2020-10-anvil-pm/index.md b/content/careers/2020-10-anvil-pm/index.md index f20129bbef..975bbf3bcc 100644 --- a/content/careers/2020-10-anvil-pm/index.md +++ b/content/careers/2020-10-anvil-pm/index.md @@ -5,7 +5,7 @@ closes: "2021-08-15" summary: "Provide technical expertise and oversight for the [AnVIL Project](http://anvilproject.org/), which incorporates Galaxy, Bioconductor, Terra, Gen3, and Dockstore into a secure cloud-based software ecosystem for genomic data analysis. " continent: NA location: "Johns Hopkins University, Baltimore, Maryland, United States" -image: "/src/images/logos/anvil-logo-text.png" +image: "/images/logos/anvil-logo-text.png" location_url: "" external_url: "https://jobs.jhu.edu/job/Baltimore-AnVIL-Project-Manager-MD-21218/682125700/" contact: "" diff --git a/content/careers/2020-10-roche/index.md b/content/careers/2020-10-roche/index.md index f4da794693..58fab5b262 100644 --- a/content/careers/2020-10-roche/index.md +++ b/content/careers/2020-10-roche/index.md @@ -5,7 +5,7 @@ closes: "2021-04-01" summary: "Lead data mining for biomarker discovery for medical conditions of interest. Develop Agile Assay Design (AAD) tools for qPCR tests. NGS data analysis tools and/or workflows. Use these tools & workflows for R&D projects. Deploy these tools on Roche intranet (Galaxy) and train scientists to use them." continent: NA location: "Roche, Bay Area, California, United States" -image: "/src/images/logos/roche-logo.png" +image: "/images/logos/roche-logo.png" location_url: "https://www.roche.com/" external_url: "https://roche.wd3.myworkdayjobs.com/en-US/roche-ext/job/Pleasanton/Principle-Scientist-II--Bioinformatics_202010-126228-1" contact: "" diff --git a/content/careers/2020-10-schatz-srpa/index.md b/content/careers/2020-10-schatz-srpa/index.md index 656659457e..1dcbe3ba33 100644 --- a/content/careers/2020-10-schatz-srpa/index.md +++ b/content/careers/2020-10-schatz-srpa/index.md @@ -5,7 +5,7 @@ closes: '2021-09-15' summary: "The Schatz Lab at Johns Hopkins University is looking for self-driven individuals that can work independently to fill multiple software development positions on the Galaxy Project; and Ambitious individuals to fill a programmer analyst position working on the Galaxy and [AnVIL](https://anvilproject.org/) projects." continent: NA location: "Schatz Lab, Johns Hopkins University, Baltimore, Maryland, United States" -image: "/src/images/logos/JohnsHopkinsLogoLarge.gif" +image: "/images/logos/JohnsHopkinsLogoLarge.gif" location_url: "" external_url: "https://jobs.jhu.edu/job/Baltimore-Sr_-Programmer-Analyst-MD-21218/666390700/" contact: "" diff --git a/content/careers/2020-11-hopkins-biostat/index.md b/content/careers/2020-11-hopkins-biostat/index.md index d9d3dfaf76..4712d4d67a 100644 --- a/content/careers/2020-11-hopkins-biostat/index.md +++ b/content/careers/2020-11-hopkins-biostat/index.md @@ -5,7 +5,7 @@ closes: summary: "Data science research and education focusing on genomics ([AnVIL](https://anvilproject.org/), [Genomic Data Science Community Network](http://www.gdscn.org/)), cancer ([ITCR](https://itcr.cancer.gov/)) or pain [A2CPS](https://a2cps.org/)." continent: NA location: "Department of Biostatistics, Bloomberg School of Public Health, Johns Hopkins University, Baltimore. Maryland, United States" -image: "/src/images/logos/JohnsHopkinsLogoLarge.gif" +image: "/images/logos/JohnsHopkinsLogoLarge.gif" location_url: "https://www.jhsph.edu/departments/biostatistics/" external_url: "https://apply.interfolio.com/81395" contact: "Martin Lindquist, Jeff Leek " diff --git a/content/careers/2020-12-ifb/index.md b/content/careers/2020-12-ifb/index.md index 579e235355..9540c424fe 100644 --- a/content/careers/2020-12-ifb/index.md +++ b/content/careers/2020-12-ifb/index.md @@ -5,7 +5,7 @@ closes: "2021-03-01" summary: "1-year position for a developer to work on [usegalaxy.fr](https://usegalaxy.fr/), focused on the contribution to the development, evolution, deployment and maintenance of the French infrastructure." continent: EU location: "French Institute of Bioinformatics (IFB), Roscoff, Strasbourg ou Rennes, France" -image: "/src/images/logos/ifb-logo-text.jpg" +image: "/images/logos/ifb-logo-text.jpg" location_url: "https://www.france-bioinformatique.fr/" external_url: "https://www.france-bioinformatique.fr/ingenieure-developpeur-devops/" contact: "Gildas Le Corguille, Julien Seiler" diff --git a/content/careers/2021-01-blankenberg/index.md b/content/careers/2021-01-blankenberg/index.md index 53afc795fc..993de2caaf 100644 --- a/content/careers/2021-01-blankenberg/index.md +++ b/content/careers/2021-01-blankenberg/index.md @@ -5,7 +5,7 @@ closes: summary: "Utilize high-throughput omics technologies, such as next generation sequencing, and data-intensive computing to explore biomedical research questions." continent: NA location: 'Blankenberg Lab, Cleveland Clinic Lerner Research Institute, Cleveland, Ohio, United States' -image: /src/images/logos/cleveland-clinic.svg +image: /images/logos/cleveland-clinic.svg location_url: "https://blankenberglab.org/" external_url: "https://blankenberglab.org/jobs" contact: "Dan Blankenberg" diff --git a/content/careers/2021-01-nmbu/index.md b/content/careers/2021-01-nmbu/index.md index 7b08be932f..dc693399c7 100644 --- a/content/careers/2021-01-nmbu/index.md +++ b/content/careers/2021-01-nmbu/index.md @@ -5,7 +5,7 @@ closes: "2021-03-13" summary: "Interested in host-microbiome interactions and multi-omic data? We have multiple positions starting in 2021. Projects have fun and interesting EU partners." continent: EU location: "MEMO Group, Norwegian University of Life Science, Ås, Norway" -image: /src/images/logos/nmbu-logo.png +image: /images/logos/nmbu-logo.png location_url: "https://www.nmbu.no/en/research/groups/memo" external_url: "https://www.jobbnorge.no/en/available-jobs/job/199862/postdoctoral-research-fellow-within-meta-omics-analysis-of-microbial-communities" contact: "" diff --git a/content/careers/2021-01-vib-comm/index.md b/content/careers/2021-01-vib-comm/index.md index 66f72b7fdf..4801a369d3 100644 --- a/content/careers/2021-01-vib-comm/index.md +++ b/content/careers/2021-01-vib-comm/index.md @@ -5,7 +5,7 @@ closes: "2021-03-04" summary: "Efficient and clear communication, and sustainable outreach towards the life sciences community." continent: EU location: "ELIXIR Belgium, VIB-UGent Center for Plant Systems Biology, Ghent, Belgium" -image: /src/images/logos/vib-logo-large.jpg +image: /images/logos/vib-logo-large.jpg location_url: "https://vib.be/vib-ugent-center-plant-systems-biology" external_url: "https://jobs.vib.be/j/32498/communications-and-community-outreach-officer" contact: "" diff --git a/content/careers/2021-01-vib-engineer/index.md b/content/careers/2021-01-vib-engineer/index.md index 411826cc2f..21ca1b418b 100644 --- a/content/careers/2021-01-vib-engineer/index.md +++ b/content/careers/2021-01-vib-engineer/index.md @@ -5,7 +5,7 @@ closes: "2021-03-11" summary: "Implementation of specific data analysis workflows in the framework of our national and international activities..." continent: EU location: "ELIXIR Belgium, VIB-UGent Center for Plant Systems Biology, Ghent, Belgium" -image: /src/images/logos/vib-logo-large.jpg +image: /images/logos/vib-logo-large.jpg location_url: "https://vib.be/vib-ugent-center-plant-systems-biology" external_url: "https://jobs.vib.be/j/32497/research-software-engineer" contact: "" diff --git a/content/careers/2021-02-dtol/index.md b/content/careers/2021-02-dtol/index.md index ec0267bb0d..0acb60ea8f 100644 --- a/content/careers/2021-02-dtol/index.md +++ b/content/careers/2021-02-dtol/index.md @@ -5,7 +5,7 @@ closes: "2021-03-07" summary: "Be part of the [Darwin Tree of Life Project](https://www.darwintreeoflife.org/) to sequence all UK eukaryote species, and work with 100s of [Natural History Museum](https://nhm.ac.uk/) scientists" continent: EU location: "Natural History Museum, London, United Kingdom" -image: "/src/careers/2021-02-dtol/natural-history-museum-logo.gif" +image: "/careers/2021-02-dtol/natural-history-museum-logo.gif" location_url: "https://nhm.ac.uk/" external_url: "https://careers.nhm.ac.uk/templates/CIPHR/jobdetail_1998.aspx" contact: "" diff --git a/content/careers/2021-02-inrae-micalis/index.md b/content/careers/2021-02-inrae-micalis/index.md index fe05b681ac..306f4d50cd 100644 --- a/content/careers/2021-02-inrae-micalis/index.md +++ b/content/careers/2021-02-inrae-micalis/index.md @@ -5,7 +5,7 @@ closes: "2021-03-01" summary: "Design solutions to synthesize molecules in microorganisms & to implement the sesolutions on robotized workstations." continent: EU location: "Galaxy-SynBioCAD team, MICALIS Institute, INRAE & AgroParisTech, Jouy-en-Josas, France" -image: /src/use/synbiocad/synbiocad-visual.png +image: /use/synbiocad/synbiocad-visual.png location_url: "https://www.jfaulon.com/galaxy-synbiocad-portal/" external_url: "http://www.jfaulon.com/wp-content/uploads/galaxy-engineer-positions_20210125.pdf" contact: "" diff --git a/content/careers/2021-02-inserm/index.md b/content/careers/2021-02-inserm/index.md index ca9380fc50..291118d967 100644 --- a/content/careers/2021-02-inserm/index.md +++ b/content/careers/2021-02-inserm/index.md @@ -5,7 +5,7 @@ closes: "2021-04-01" summary: "A full position is available for 2 years, and starting at the earliest timepoint possible. This includes working with and running training on the internal Galaxy instance." continent: EU location: "INSERM - Institut Pasteur de Lille, Lille, France" -image: /src/images/logos/inserm-logo-big-trans.png +image: /images/logos/inserm-logo-big-trans.png location_url: "http://www.nord-ouest.inserm.fr/" external_url: "http://www.idf.inserm.fr/newsletter/uri/37d9fe04cbfdf9cbfef9fbf801d306ce0909ced40007feffd5d006f9fe28cd31fd050302d504ffd5fe2eff00fdd003d20234d3d30034fefed4d106fb012bcd3001d503fdd033fe0202fefffbfdd503cd0703d3d20004fefcd5d105fefd2dd130010503fdd401fa02022f00fcfdd104cf0703cf000005fd04d4cf05010100d10002d103fed033fbd0fff9fcf9facd02020601d3d30035fd04d40105ff012dd2fd010302fcd501fed702fc00f9fdd104cf0604d3cb0101fdfed4d405fe012cd10201d80230d402fed303fb" contact: "Julie Dubois-Chevalier" diff --git a/content/careers/2021-02-mhh/index.md b/content/careers/2021-02-mhh/index.md index c33e662a7c..efedfb6193 100644 --- a/content/careers/2021-02-mhh/index.md +++ b/content/careers/2021-02-mhh/index.md @@ -5,7 +5,7 @@ closes: "2021-04-30" summary: "A full position is available for 2 years, and starting at the earliest timepoint possible. This includes working with and running training on the internal Galaxy instance." continent: EU location: "Research Core Unit Genomics (RCUG), Hannover Medical School, Hannover, Germany" -image: /src/images/logos/hannover-mh-rcu-logo.jpg +image: /images/logos/hannover-mh-rcu-logo.jpg location_url: "https://www.mhh.de/genomics" external_url: "https://mhh.hr4you.org/job/view/559/experienced-specialist-in-next-generation-sequencing-data-analysis-f-d-m?page_lang=en" contact: "Oliver Dittrich-Breiholz" diff --git a/content/careers/2021-03-fluxomics/index.md b/content/careers/2021-03-fluxomics/index.md index a47094ba35..ff172011b5 100644 --- a/content/careers/2021-03-fluxomics/index.md +++ b/content/careers/2021-03-fluxomics/index.md @@ -5,7 +5,7 @@ closes: "2021-03-30" summary: "Develop new computational tools for fluxomics and provide support and upgrades for existing tools. Benchmark and validate both new and existing tools. Training and dissemination activities aiming at promoting the use of the computational tools of the platform. Part-time and temporary." continent: EU location: "University of Barcelona node of the bioinformatics platform of the Instituto de Salud Carlos III, Barcelona, Spain" -image: "/src/careers/2021-03-fluxomics/ibub-logo.png" +image: "/careers/2021-03-fluxomics/ibub-logo.png" location_url: "" external_url: "https://euraxess.ec.europa.eu/jobs/617490" contact: "Marta Cascante" diff --git a/content/careers/2021-03-galaxyworks/index.md b/content/careers/2021-03-galaxyworks/index.md index edef3da187..b88fb91720 100644 --- a/content/careers/2021-03-galaxyworks/index.md +++ b/content/careers/2021-03-galaxyworks/index.md @@ -5,7 +5,7 @@ closes: summary: "Solving practical tasks for our clients that span different analysis techniques, require understanding of the tools, data, and biology." continent: NA location: "GalaxyWorks, Baltimore (or remote), Maryland, United States" -image: "/src/images/logos/galaxyworks-logo.png" +image: "/images/logos/galaxyworks-logo.png" location_url: "https://galaxyworks.io/" external_url: "https://galaxyworks.io/careers/" contact: "" diff --git a/content/careers/2021-03-incliva/index.md b/content/careers/2021-03-incliva/index.md index 2dff140b22..47c3291dca 100644 --- a/content/careers/2021-03-incliva/index.md +++ b/content/careers/2021-03-incliva/index.md @@ -5,7 +5,7 @@ closes: "2021-07-01" summary: '...para el desarrollo del proyecto: “Utilidad de la biopsia líquida y organoides en el manejo y tratamiento de adenocarcinoma de páncreas: hacia una Medicina de Precisión"...' continent: EU location: "Instituto de Investigación Sanitaria INCLIVA, Spain" -image: "/src/careers/2021-03-incliva/incliva-logo-en.png" +image: "/careers/2021-03-incliva/incliva-logo-en.png" location_url: "https://www.incliva.es/" external_url: "https://inb-elixir.es/jobs/tituladao-superior-bioinformaticao" contact: "" diff --git a/content/careers/2021-03-melbourne/index.md b/content/careers/2021-03-melbourne/index.md index 213b8553b3..7f8fc00d0a 100644 --- a/content/careers/2021-03-melbourne/index.md +++ b/content/careers/2021-03-melbourne/index.md @@ -5,7 +5,7 @@ closes: "2021-04-19" summary: "Combine technical understanding with an ability to bring together software engineers and different research groups to optimise workflows and usage on a range of platforms, such as Galaxy Australia and Portable Pipelines (JANIS)." continent: AU location: "University of Melbourne, Melbourne, Victoria, Australia" -image: "/src/images/logos/melbourne-bioinformatics.png" +image: "/images/logos/melbourne-bioinformatics.png" location_url: "https://www.melbournebioinformatics.org.au/" external_url: "http://jobs.unimelb.edu.au/caw/en/job/904562/academic-specialist-bioinformatician" contact: "" diff --git a/content/careers/2021-03-umn/index.md b/content/careers/2021-03-umn/index.md index 0b2b00d085..89616535bd 100644 --- a/content/careers/2021-03-umn/index.md +++ b/content/careers/2021-03-umn/index.md @@ -5,7 +5,7 @@ closes: "2021-04-30" summary: "Develop and apply new cutting-edge instrumental methods (data independent acquisition and other targeted, quantitative MS-based methods) along with bioinformatics approaches for systems biology-based multi-omics analysis of disease" continent: NA location: "University of Minnesota, Minneapolis, Minnesota, United States" -image: "/src/images/logos/minnesota-d2d.png" +image: "/images/logos/minnesota-d2d.png" location_url: "https://cbs.umn.edu/academics/departments/bmbb" external_url: "http://z.umn.edu/lungpostdoc" contact: "Tim Griffin" diff --git a/content/careers/2021-04-lille-2/index.md b/content/careers/2021-04-lille-2/index.md index 0046877b62..36bed4f3c3 100644 --- a/content/careers/2021-04-lille-2/index.md +++ b/content/careers/2021-04-lille-2/index.md @@ -5,7 +5,7 @@ closes: "2021-06-01" summary: "Contribute and support the bioinformatics team in its effort to develop bioinformatic tools and procedures allowing to provide manageable information to biologists." continent: EU location: "Institut Pasteur de Lille, Lille, France" -image: "/src/careers/2021-04-lille/lille-banner.png" +image: "/careers/2021-04-lille/lille-banner.png" location_url: "https://u1011.pasteur-lille.fr/5/the-unit/theme-4-integrated-molecular-analysis-of-gene-expression-in-liver-diseases/" external_url: "https://www.sfbi.fr/emplois/offre/202104150534-cdd-bioinformatic-engineer" contact: "Julie Dubois-Chevalier" diff --git a/content/careers/2021-04-lille/index.md b/content/careers/2021-04-lille/index.md index 0970fd8b09..67376c90b6 100644 --- a/content/careers/2021-04-lille/index.md +++ b/content/careers/2021-04-lille/index.md @@ -5,7 +5,7 @@ closes: "2021-09-01" summary: "Transcriptomic pipelines & Data Integration. Contribute/support the bioinformatics team in its effort to develop bioinformatic tools and procedures allowing to provide manageable information to biologists. 12 months, renewable" continent: EU location: "Institut Pasteur de Lille, Lille, France" -image: "/src/careers/2021-04-lille/lille-banner.png" +image: "/careers/2021-04-lille/lille-banner.png" location_url: "https://u1011.pasteur-lille.fr/5/the-unit/theme-4-integrated-molecular-analysis-of-gene-expression-in-liver-diseases/" external_url: "https://www.sfbi.fr/emplois/offre/202104080404-cdd-ingenieur-de-recherche-bioinformatique-transcriptomic-pipelines-data-integration" contact: "Julie Dubois-Chevalier" diff --git a/content/careers/2021-05-mpi-ie/index.md b/content/careers/2021-05-mpi-ie/index.md index 8954848c8a..181a188d5f 100644 --- a/content/careers/2021-05-mpi-ie/index.md +++ b/content/careers/2021-05-mpi-ie/index.md @@ -5,7 +5,7 @@ closes: "2021-06-30" summary: "working in an interdisciplinary team with close links to different departments, research groups, and other core facilities (Deep-Sequencing, Proteomics, Metabolomics)." continent: EU location: "Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany" -image: "/src/images/logos/MaxPlanckIIE.png" +image: "/images/logos/MaxPlanckIIE.png" location_url: "https://www.ie-freiburg.mpg.de/" external_url: "https://www.ie-freiburg.mpg.de/5559856/job_full_offer_16903381?c=4799908" contact: "Thomas Manke" diff --git a/content/careers/2021-05-san-martino/index.md b/content/careers/2021-05-san-martino/index.md index 678a74269c..b2354dacd1 100644 --- a/content/careers/2021-05-san-martino/index.md +++ b/content/careers/2021-05-san-martino/index.md @@ -5,7 +5,7 @@ closes: "2021-06-13" summary: "Develop a Galaxy server for microbiology in collaboration with Italian and European microbiologists. A working knowledge of Italian is required." continent: EU location: "San Martino Hospital, Genoa, Italy" -image: "/src/careers/2021-05-san-martino/logo_smartino.png" +image: "/careers/2021-05-san-martino/logo_smartino.png" location_url: "https://www.ospedalesanmartino.it/" external_url: "https://www.ospedalesanmartino.it/bandi-e-gare/incarichi-professionali/publiccompetition/1457895-21lp_bioinfo_proteo.html" contact: "Paolo Romano" diff --git a/content/careers/2021-06-irsicaixa/index.md b/content/careers/2021-06-irsicaixa/index.md index 54f2941397..78ee58d0c4 100644 --- a/content/careers/2021-06-irsicaixa/index.md +++ b/content/careers/2021-06-irsicaixa/index.md @@ -5,7 +5,7 @@ closes: "2021-06-20" summary: "Implement and maintain the research data of the institute. Deploy, create documentation and maintain solutions to manage scientific data according to requirements specific in research data management plans. Support IrsiCaixa researchers to ensure the appropriate implementation of standards and methodologies for data management." continent: EU location: "IrsiCaixa AIDS Research Institute, Barcelona, Spain" -image: "/src/careers/2021-06-irsicaixa/irsicaixa-logo.jpg" +image: "/careers/2021-06-irsicaixa/irsicaixa-logo.jpg" location_url: "https://www.irsicaixa.es/en" external_url: "https://euraxess.ec.europa.eu/jobs/642644" contact: "Lidia Ruiz" diff --git a/content/careers/2021-06-tsl/index.md b/content/careers/2021-06-tsl/index.md index 064173c340..1985487736 100644 --- a/content/careers/2021-06-tsl/index.md +++ b/content/careers/2021-06-tsl/index.md @@ -5,7 +5,7 @@ closes: "2021-07-22" summary: "Provide expertise, tools, infrastructure, and analyses underpinning all the high impact science at the Laboratory. Be a fully collaborative scientist. working on challenging projects across groups." continent: EU location: "The Sainsbury Lab, Norwich, United Kingdom" -image: "/src/images/logos/tsl-logo-wide.png" +image: "/images/logos/tsl-logo-wide.png" location_url: "http://www.tsl.ac.uk/" external_url: "http://www.tsl.ac.uk/opportunities/computational-biologistbioinformatician/" contact: "" diff --git a/content/careers/2021-07-avans/index.md b/content/careers/2021-07-avans/index.md index 4eda600533..0bb802faa3 100644 --- a/content/careers/2021-07-avans/index.md +++ b/content/careers/2021-07-avans/index.md @@ -5,7 +5,7 @@ closes: "2021-08-22" summary: "Contribute to the practical training of new professionals in the biomedical, biotechnological, and forensic fields with data handling, analysis, and visualization skills. Work includes maintaining the dry-lab environment (Linux and Galaxy servers)." continent: EU location: "Avans Hogeschool, Breda, The Netherlands" -image: "/src/images/logos/avans-hogeschool-logo.png" +image: "/images/logos/avans-hogeschool-logo.png" location_url: "https://www.avans.nl/" external_url: "https://www.avans.nl/over-avans/werken-bij-avans/vacatures/detail/2021/dry-lab-technical-teaching-assistant--technisch-onderwijsassistent-dry-lab--885396" contact: "Helena Rasche" diff --git a/content/careers/2021-07-cnrs/index.md b/content/careers/2021-07-cnrs/index.md index 1fa314d01b..776b4fe37a 100644 --- a/content/careers/2021-07-cnrs/index.md +++ b/content/careers/2021-07-cnrs/index.md @@ -5,7 +5,7 @@ closes: "2021-07-20" summary: "Déployer sous Galaxy un système d'analyse automatisée des séquences de SARS-CoV-2 produites par différentes technologies NGS (Illumina, MinIon et Nanopore). Assurer le bon fonctionnement du serveur Galaxy dédié à ces analyses. Connecter les services Galaxy avec..." continent: EU location: "CNRS, Évry-Courcouronnes, France" -image: /src/images/logos/cnrs-logo-text-wide.png +image: /images/logos/cnrs-logo-text-wide.png location_url: "https://www.cnrs.fr/" external_url: "https://emploi.cnrs.fr/Offres/CDD/UMS3601-JACVAN-001/Default.aspx" contact: "" diff --git a/content/careers/2021-07-euro-bioimaging/index.md b/content/careers/2021-07-euro-bioimaging/index.md index a2e0c71701..35e0a44682 100644 --- a/content/careers/2021-07-euro-bioimaging/index.md +++ b/content/careers/2021-07-euro-bioimaging/index.md @@ -5,7 +5,7 @@ closes: "2021-08-31" summary: "Support the Image Data Services of the [European research infrastructure Euro-BioImaging ERIC](https://www.eurobioimaging.eu/). Develop modular, shareable, open, and FAIR workflows, integrated in Galaxy for submitting large image data sets to the BioImage Archive." continent: EU location: "EMBL Heidelberg, Heidelberg, Germany" -image: "/src/images/logos/euro-bioimaging-wide.png" +image: "/images/logos/euro-bioimaging-wide.png" location_url: "https://www.embl.org/sites/heidelberg/" external_url: "https://www.embl.org/jobs/position/HD02020" contact: "Aastha Mathur, Antje Keppler" diff --git a/content/careers/2021-07-fda/index.md b/content/careers/2021-07-fda/index.md index 21a5f30833..6f23bf7c99 100644 --- a/content/careers/2021-07-fda/index.md +++ b/content/careers/2021-07-fda/index.md @@ -5,7 +5,7 @@ closes: "2021-07-21" summary: "Provide comprehensive statistical and bioinformatics support for regulatory and research-related activities." continent: NA location: "Food and Drug Administration (FDA), Center for Food Safety and Applied Nutrition, College Park, Maryland, United States" -image: "/src/images/logos/fda-logo-wide.png" +image: "/images/logos/fda-logo-wide.png" location_url: "https://www.fda.gov/about-fda/fda-organization/center-food-safety-and-applied-nutrition-cfsan" external_url: "https://www.usajobs.gov/GetJob/ViewDetails/606850100" contact: "" diff --git a/content/careers/2021-07-gsk/index.md b/content/careers/2021-07-gsk/index.md index 3987df9e48..c28983c9d9 100644 --- a/content/careers/2021-07-gsk/index.md +++ b/content/careers/2021-07-gsk/index.md @@ -5,7 +5,7 @@ closes: "" summary: "Development and maintenance of bioinformatics analysis pipelines to continuously improve the bioinformatics support available at GSK as well as to provide creative solutions to a wide variety of biological big data challenges using a variety of environments (incl. Linux, Galaxy, DNA-Nexus or any relevant scripting language) for omics analysis." continent: EU location: "GSK, Siena, Italy" -image: "/src/images/logos/glaxosmithkline-thin.jpg" +image: "/images/logos/glaxosmithkline-thin.jpg" location_url: "https://www.gsk.com/" external_url: "https://jobs.gsk.com/en-gb/jobs/296828" contact: "" diff --git a/content/careers/2021-07-ifremer/index.md b/content/careers/2021-07-ifremer/index.md index c8c7ebb5cb..7f3f614b6e 100644 --- a/content/careers/2021-07-ifremer/index.md +++ b/content/careers/2021-07-ifremer/index.md @@ -5,7 +5,7 @@ closes: "2021-08-22" summary: "Ce poste viendra renforcer le service de bioinformatique, tout en préservant sa vocation à mutualiser ce qui doit l’être (des logiciels, des données, des savoir-faire…) Le service de bio-informatique maintient et fait évoluer des services de nature bio-informatique : portail Galaxy, formations/informations ciblées, support aux logiciels communs, développements de pipelines…" continent: EU location: "Ifremer, Plouzané, France" -image: "/src/images/logos/ifremer-logo.jpg " +image: "/images/logos/ifremer-logo.jpg " location_url: "https://wwz.ifremer.fr/" external_url: "https://ifremer.jobs.net/fr-FR/job/ingenieur-en-bio-informatique-h-f/J3N7XK6VW89K117VFM2" contact: "Patrick Durand" diff --git a/content/careers/2021-07-inrae/index.md b/content/careers/2021-07-inrae/index.md index abf7cc3bdc..64fa462916 100644 --- a/content/careers/2021-07-inrae/index.md +++ b/content/careers/2021-07-inrae/index.md @@ -5,7 +5,7 @@ closes: "2021-09-01" summary: "Ainsi les travaux réalisés pourront à terme s'intégrer à l'interface Galaxy Workflow4Metabolomics (W4M) développée en collaboration entre l'Institut français de Bioinformatique (IFB) et l'infrastructure Nationale en métabolomique et fluxomique (MetaboHUB) dont MetaToul est partenaire" continent: EU location: "INRAE Toxalim, Toulouse, France" -image: "/src/images/logos/inrae-logo.jpg" +image: "/images/logos/inrae-logo.jpg" location_url: "https://www6.toulouse.inrae.fr/toxalim_eng/TOXALIM-Research-Centre-in-Food-Toxicology" external_url: "https://www.sfbi.fr/emplois/offre/202107221244-cdd-ingenieur-en-biostatistiques" contact: "Laurent Debrauwer" diff --git a/content/careers/2021-07-janis/index.md b/content/careers/2021-07-janis/index.md index 1ec1a6108b..30b05f59c4 100644 --- a/content/careers/2021-07-janis/index.md +++ b/content/careers/2021-07-janis/index.md @@ -5,7 +5,7 @@ closes: "2021-08-11" summary: 'Lead developer of the [Janis “Portable Pipelines Project,”](https://janis.readthedocs.io/en/latest/) an exciting system that simplifies the specification of complex analysis workflows and their deployment on HPC and Cloud systems.' continent: AU location: "Melbourne Bioinformatics, University of Melbourne, Melbourne, Australia" -image: "/src/images/logos/melbourne-bioinformatics.png" +image: "/images/logos/melbourne-bioinformatics.png" location_url: "https://www.melbournebioinformatics.org.au/" external_url: "https://jobs.unimelb.edu.au/en/job/905786/academic-specialist-software-engineering-melbourne-bioinformatics" contact: "Fiona Kerr" diff --git a/content/careers/2021-07-neb/index.md b/content/careers/2021-07-neb/index.md index 5ad0f15ee6..8bd931e95f 100644 --- a/content/careers/2021-07-neb/index.md +++ b/content/careers/2021-07-neb/index.md @@ -5,7 +5,7 @@ closes: "" summary: "Work collaboratively with bench scientists. We will collaboratively construct software methods, analyze sequence results, and integrate data from instrumentation, ultimately creating high quality, rigorously tested, and provably excellent products." continent: NA location: "New England BioLabs, Ipswich, Massachusetts, United States" -image: "/src/images/logos/neb-wide.jpg" +image: "/images/logos/neb-wide.jpg" location_url: "https://www.neb.com/" external_url: "https://neb.wd5.myworkdayjobs.com/en-US/NEB_Careers/job/Ipswich-MA-United-States/Development-Scientist---Bioinformatics_1317" contact: "Brad Langhorst" diff --git a/content/careers/2021-07-nmbu/index.md b/content/careers/2021-07-nmbu/index.md index 03258d93a6..80f6f7b27e 100644 --- a/content/careers/2021-07-nmbu/index.md +++ b/content/careers/2021-07-nmbu/index.md @@ -5,7 +5,7 @@ closes: "2021-08-15" summary: "Explore how the genome shapes diverse traits with the computational analysis. Watch the [video about this position](https://www.youtube.com/watch?v=KNLIX3asTiE)." continent: EU location: "CIGENE, Norwegian University of Life Science, Ås, Norway" -image: /src/images/logos/nmbu-logo.png +image: /images/logos/nmbu-logo.png location_url: "https://cigene.no/" external_url: "https://www.jobbnorge.no/en/available-jobs/job/209643/phd-scholarship-on-functional-and-evolutionary-genomics" contact: "" diff --git a/content/careers/2021-07-roche/index.md b/content/careers/2021-07-roche/index.md index 3f0959511f..eb6de379a9 100644 --- a/content/careers/2021-07-roche/index.md +++ b/content/careers/2021-07-roche/index.md @@ -5,7 +5,7 @@ closes: "2021-09-10" summary: "research and development of qPCR tests for cobas® x800, cobas® Liat®, and digital PCR. Deploy these tools on Roche intranet (Galaxy) and train scientists to use them." continent: NA location: "Roche, Bay Area, California, United States" -image: "/src/images/logos/roche-logo.png" +image: "/images/logos/roche-logo.png" location_url: "https://www.roche.com/" external_url: "https://roche.wd3.myworkdayjobs.com/en-US/roche-ext/job/Pleasanton/Senior-Scientist--Bioinformatics_202103-106962-1" contact: "" diff --git a/content/careers/2021-07-sciensano/index.md b/content/careers/2021-07-sciensano/index.md index b7eff42404..2d997c9aa8 100644 --- a/content/careers/2021-07-sciensano/index.md +++ b/content/careers/2021-07-sciensano/index.md @@ -5,7 +5,7 @@ closes: "" summary: "Support the development of RNASeq applications for the characterization of host response to viral infections (transcriptomics), and the development of nanopore sequencing based viral urgency diagnostics." continent: EU location: "Sciensano, Brussels, Belgium" -image: "/src/images/logos/sciensano-logo.jpg" +image: "/images/logos/sciensano-logo.jpg" location_url: "https://www.sciensano.be/" external_url: "https://wiv-isp.hr-technologies.com/content/jobpage.asp?a=DETAIL&jdkid=781&l=FRENCH" contact: "" diff --git a/content/cloud/jetstream/allocation/index.md b/content/cloud/jetstream/allocation/index.md index a1d09990c4..53ab10f61a 100644 --- a/content/cloud/jetstream/allocation/index.md +++ b/content/cloud/jetstream/allocation/index.md @@ -31,13 +31,13 @@ Visit https://iu.jetstream-cloud.org/dashboard and login using your TACC credentials. TACC credentials are the ones you can obtain and/or login at https://portal.xsede.org/. The _Domain_ field is always set to _tacc_. - +

2. Navigate to the _API Access_ page and download the _OpenStack RC File v3_: - +

@@ -46,7 +46,7 @@ password. A more convenient but less secure approach is to save the password directly in the file by editing it as follows (note the two lines being commented and the value of `OS_PASSWORD` variable set): - +

@@ -61,20 +61,20 @@ On the application launch page, you will need to provide your credentials. The easiest method is to load them from the file we downloaded in the previous step. - +

Once the file is loaded, fill in any missing fields and validate the credentials. - +

If the credentials authenticate, click _Next_ to proceed. - +

@@ -82,7 +82,7 @@ You also have an option to save the uploaded credentials to the server and in the future you will be able to just select the credentials from the appropriate menu: - +

diff --git a/content/cloud/jetstream/index.md b/content/cloud/jetstream/index.md index 6fccd70444..965fdc4ade 100644 --- a/content/cloud/jetstream/index.md +++ b/content/cloud/jetstream/index.md @@ -17,7 +17,7 @@ After you have your XSEDE account and an active allocation: * Visit https://use.jetstream-cloud.org/, and log in using your university, national lab, facility, project, Google, or Globus ID. * Once logged in *select* **Launch an instance** -

+

* Browse the available images and choose a Galaxy image (see [Released versions](/cloud/jetstream/#released-versions) below for the available options)

@@ -33,13 +33,13 @@ After you have your XSEDE account and an active allocation: * And then click **Launch** * If you don't have any existing projects in Jetstream, the next form will prompt you to create a new project. -

+

* The instance will be built and then launched. After a few minutes the instance will be **Active** and ready to use:

* In about 5 minutes, you should have your own Galaxy server - just copy the new server IP address plus :8080 to a new browser window (eg, http://your.ip.addr:8080) -

+

## What is Jetstream cloud? diff --git a/content/cloudman/aws/getting-started/index.md b/content/cloudman/aws/getting-started/index.md index 1595a166e2..8fa94881a4 100644 --- a/content/cloudman/aws/getting-started/index.md +++ b/content/cloudman/aws/getting-started/index.md @@ -27,16 +27,16 @@ This page provides a step-by-step instructions on how to start your own instance - + - + - + - +
Set region; click to enlarge
1.2. Set region 		Set region; click to enlarge
1.2. Set region
Click on key pairs; click to enlarge
1.3. Click on key pairs 		Click on key pairs; click to enlarge
1.3. Click on key pairs
Create security group; click to enlarge
1.5. Create security group 		Create security group; click to enlarge
1.5. Create security group
Create security group; click to enlarge
1.7. Add inbound rules 		Create security group; click to enlarge
1.7. Add inbound rules
@@ -75,28 +75,28 @@ All of these inbound rules are necessary for proper functioning of CloudMan and - + - + - + - + - + - + - + - +
Find & Select AMI; click to enlarge
2.3. Find & Select AMI 		Find & Select AMI; click to enlarge
2.3. Find & Select AMI
Set instance details; click to enlarge
2.4. Instance details 		Set instance details; click to enlarge
2.4. Instance details
set user data; click to enlarge
2.5. Set User Data. 		set user data; click to enlarge
2.5. Set User Data.
Get to credentials; click to enlarge
2.5.3. Get to credentials. 		Get to credentials; click to enlarge
2.5.3. Get to credentials.
Credentials; click to enlarge
2.5.4. Credentials. 		Credentials; click to enlarge
2.5.4. Credentials.
Review & launch; click to enlarge
2.9. Review & Launch! 		Review & launch; click to enlarge
2.9. Review & Launch!
AWS EC2 instances list; click to enlarge
2.10. AWS instance is up 		AWS EC2 instances list; click to enlarge
2.10. AWS instance is up
Galaxy not running yet; click to enlarge
2.11. Galaxy CloudMan is
ready to configure 		Galaxy not running yet; click to enlarge
2.11. Galaxy CloudMan is
ready to configure
diff --git a/content/community/galaxy-admins/meetups/2015-02-19/index.md b/content/community/galaxy-admins/meetups/2015-02-19/index.md index 3f8973a1f1..56c857ac88 100644 --- a/content/community/galaxy-admins/meetups/2015-02-19/index.md +++ b/content/community/galaxy-admins/meetups/2015-02-19/index.md @@ -20,7 +20,7 @@ Topics - GalaxyAdmins direction (slides)
Hans-Rudolf Hotz
Results from the 2014 Galaxy Community Questionnaires (Slides)
Dave Clements
Galaxy Project Update: Gravity
Nate Coraor
+ GalaxyAdmins direction (slides)
Hans-Rudolf Hotz
Results from the 2014 Galaxy Community Questionnaires (Slides)
Dave Clements
Galaxy Project Update: Gravity
Nate Coraor
Links diff --git a/content/community/galaxy-admins/meetups/2015-04-16/index.md b/content/community/galaxy-admins/meetups/2015-04-16/index.md index bb1e52b941..11333404ac 100644 --- a/content/community/galaxy-admins/meetups/2015-04-16/index.md +++ b/content/community/galaxy-admins/meetups/2015-04-16/index.md @@ -20,7 +20,7 @@ Topics - IU Galaxies - tips and tricks (Slides)
Carrie Ganote, National Center for Genome Analysis Support (NCGAS), Pervasive Technology Institute, Indiana University
Galaxy Project Update: Galaxy's new tool form support (Slides)
Aysam Guerler, Galaxy, Johns Hopkins University
+ IU Galaxies - tips and tricks (Slides)
Carrie Ganote, National Center for Genome Analysis Support (NCGAS), Pervasive Technology Institute, Indiana University
Galaxy Project Update: Galaxy's new tool form support (Slides)
Aysam Guerler, Galaxy, Johns Hopkins University
Links diff --git a/content/community/galaxy-admins/meetups/2016-06-16/index.md b/content/community/galaxy-admins/meetups/2016-06-16/index.md index c90c57fd07..3276628088 100644 --- a/content/community/galaxy-admins/meetups/2016-06-16/index.md +++ b/content/community/galaxy-admins/meetups/2016-06-16/index.md @@ -57,8 +57,8 @@ Galaxy Admins can sign in to the GRT, register their Galaxy servers, and get bac And there was a question about MSI login screens during the presentation by Evan and JJ. Here are two screenshots:
-Login Screen 1; click to expand -Login Screen 1; click to expand +Login Screen 1; click to expand +Login Screen 1; click to expand
## Call Technology diff --git a/content/datafiles/mouse-chip-seq-data/index.md b/content/datafiles/mouse-chip-seq-data/index.md index e16ea7f9f9..160e1570bd 100644 --- a/content/datafiles/mouse-chip-seq-data/index.md +++ b/content/datafiles/mouse-chip-seq-data/index.md @@ -9,7 +9,7 @@ INCLUDE(/UnderConstruction) * Other # Mammalian Promoter Database Files -
MPromDB
+
MPromDB
These data come from the [Mammalian Promoter Database (MPromDB)](http://mpromdb.wistar.upenn.edu/) at the [Wistar Instute](http://www.wistar.org). MPromDB "is a curated database that strives to annotate gene promoters identified from ChIP-Seq experiment results. The long term goal of this database is to provide an integrated resource for mammalian gene transcriptional regulation and epigenetics." It is produced and supported by the [Davuluri Lab](http://bioinformatics.wistar.upenn.edu/davuluri), and Galaxy wishes to thank them for allowing us to use this data. ## Restrictions diff --git a/content/events/2017-01-23-aberdeen-rna-seq/index.md b/content/events/2017-01-23-aberdeen-rna-seq/index.md index d8aa4c78df..40fbe1f3a2 100644 --- a/content/events/2017-01-23-aberdeen-rna-seq/index.md +++ b/content/events/2017-01-23-aberdeen-rna-seq/index.md @@ -9,5 +9,5 @@ location_url: http://www.abdn.ac.uk/genomics/bioinformatics/training/ external_url: https://www.abdn.ac.uk/genomics/documents/201617_Workshops/RNA_Sequencing_2017.pdf gtn: true contact: Sophie Shaw -image: /src/images/logos/AberdeenLogoTrans.png +image: /images/logos/AberdeenLogoTrans.png --- diff --git a/content/events/2017-01-24-aberdeen-rna-seq/index.md b/content/events/2017-01-24-aberdeen-rna-seq/index.md index 504d46fe56..c925e6d51d 100644 --- a/content/events/2017-01-24-aberdeen-rna-seq/index.md +++ b/content/events/2017-01-24-aberdeen-rna-seq/index.md @@ -9,5 +9,5 @@ location_url: http://www.abdn.ac.uk/genomics/bioinformatics/training/ external_url: https://www.abdn.ac.uk/genomics/documents/201617_Workshops/Advanced_RNA_Sequencing_2017.pdf gtn: true contact: Sophie Shaw -image: /src/images/logos/AberdeenLogoTrans.png +image: /images/logos/AberdeenLogoTrans.png --- diff --git a/content/events/2017-06-cbib/index.md b/content/events/2017-06-cbib/index.md index 0561745955..1dc16f4b48 100644 --- a/content/events/2017-06-cbib/index.md +++ b/content/events/2017-06-cbib/index.md @@ -4,7 +4,7 @@ date: '2017-06-06' days: 3 continent: EU location: Carreire de l'Université Bordeaux Segalen, Bordeaux, France -image: /src/images/logos/cbib-logo-300.png +image: /images/logos/cbib-logo-300.png location_url: https://www.cbib.u-bordeaux.fr/ external_url: http://cnrsformation.cnrs.fr/stage-17012-Analyse-avancee-de-sequences.html?axe=65 contact: Aurélien Barré, Raluca Uricaru, Benjamin Dartigues diff --git a/content/events/2017-06-g-on-ramp/index.md b/content/events/2017-06-g-on-ramp/index.md index ab4611521a..a4fd4080e7 100644 --- a/content/events/2017-06-g-on-ramp/index.md +++ b/content/events/2017-06-g-on-ramp/index.md @@ -5,7 +5,7 @@ days: 3 tease: create genome browsers for collaborative annotations of eukaryotic genomes continent: NA location: Washington University in St. Louis, Missouri, United States -image: /src/images/logos/WashULogoWide.jpg +image: /images/logos/WashULogoWide.jpg location_url: https://wustl.edu/ external_url: /news/2017-03-g-on-ramp/ contact: Jeremy Goecks, Sarah Elgin diff --git a/content/events/2017-07-g-on-ramp/index.md b/content/events/2017-07-g-on-ramp/index.md index 57d2609366..a76eef3d71 100644 --- a/content/events/2017-07-g-on-ramp/index.md +++ b/content/events/2017-07-g-on-ramp/index.md @@ -5,7 +5,7 @@ days: 3 tease: create genome browsers for collaborative annotations of eukaryotic genomes continent: NA location: Washington University in St. Louis, Missouri, United States -image: /src/images/logos/WashULogoWide.jpg +image: /images/logos/WashULogoWide.jpg location_url: https://wustl.edu/ external_url: /news/2017-03-g-on-ramp/ contact: Jeremy Goecks, Sarah Elgin diff --git a/content/events/2017-10-cbib/index.md b/content/events/2017-10-cbib/index.md index 4bbd1f7acd..3f2fb358c2 100644 --- a/content/events/2017-10-cbib/index.md +++ b/content/events/2017-10-cbib/index.md @@ -4,7 +4,7 @@ date: '2017-10-23' days: 3 continent: EU location: Carreire de l'Université Bordeaux Segalen, Bordeaux, France -image: /src/images/logos/cbib-logo-300.png +image: /images/logos/cbib-logo-300.png location_url: https://www.cbib.u-bordeaux.fr/ external_url: http://cnrsformation.cnrs.fr/stage-17012-Analyse-avancee-de-sequences.html?axe=65 contact: Aurélien Barré, Raluca Uricaru, Benjamin Dartigues diff --git a/content/events/2017-10-denbi-future/index.md b/content/events/2017-10-denbi-future/index.md index 807eff7ef4..aebc3fe460 100644 --- a/content/events/2017-10-denbi-future/index.md +++ b/content/events/2017-10-denbi-future/index.md @@ -6,7 +6,7 @@ tease: continent: EU location: "The Future Development of Bioinformatics in Germany and Europe, ZiF, Bielefeld University, Bielefeld, Germany" location_url: http://www.uni-bielefeld.de/ZIF/ -image: /src/images/logos/deNBILogo.png +image: /images/logos/deNBILogo.png external_url: http://www.denbi.de/symposium2017 contact: Rolf Backofen, Björn Grüning --- diff --git a/content/events/2017-10-tripal-training/index.md b/content/events/2017-10-tripal-training/index.md index ea513e7b7a..3f2c95d5b1 100644 --- a/content/events/2017-10-tripal-training/index.md +++ b/content/events/2017-10-tripal-training/index.md @@ -6,7 +6,7 @@ tease: "... setup and usage of the new Tripal Galaxy module ..." continent: GL location: Online location_url: http://tripal.info/news/october-training -image: /src/images/logos/tripal-logo-dark.png +image: /images/logos/tripal-logo-dark.png external_url: http://tripal.info/news/october-training contact: 'Meg Staton' gtn: false diff --git a/content/events/2017-11-aberdeen-assembly/index.md b/content/events/2017-11-aberdeen-assembly/index.md index 178d483a9c..bfe56579fd 100644 --- a/content/events/2017-11-aberdeen-assembly/index.md +++ b/content/events/2017-11-aberdeen-assembly/index.md @@ -9,5 +9,5 @@ location_url: http://www.abdn.ac.uk/genomics/bioinformatics/training/ external_url: https://www.abdn.ac.uk/genomics/documents/201718_Workshops/Genome_Assembly_2017.pdf gtn: true contact: Sophie Shaw -image: /src/images/logos/AberdeenLogoTrans.png +image: /images/logos/AberdeenLogoTrans.png --- diff --git a/content/events/2017-11-aberdeen-qc/index.md b/content/events/2017-11-aberdeen-qc/index.md index 53747a8aa5..51355adcb7 100644 --- a/content/events/2017-11-aberdeen-qc/index.md +++ b/content/events/2017-11-aberdeen-qc/index.md @@ -9,5 +9,5 @@ location_url: http://www.abdn.ac.uk/genomics/bioinformatics/training/ external_url: https://www.abdn.ac.uk/genomics/documents/201718_Workshops/Quality_Control_2017.pdf gtn: true contact: Sophie Shaw -image: /src/images/logos/AberdeenLogoTrans.png +image: /images/logos/AberdeenLogoTrans.png --- diff --git a/content/events/2017-11-asia-pacific-bioconductor/index.md b/content/events/2017-11-asia-pacific-bioconductor/index.md index dcde760681..5f86be9191 100644 --- a/content/events/2017-11-asia-pacific-bioconductor/index.md +++ b/content/events/2017-11-asia-pacific-bioconductor/index.md @@ -9,5 +9,5 @@ location_url: https://www.abacbs.org/conference external_url: https://www.abacbs.org/conference-workshops/#block-yui_3_17_2_3_1508128691412_8156 gtn: false contact: Maria Doyle -image: /src/images/logos/BioconductorLogo.gif +image: /images/logos/BioconductorLogo.gif --- diff --git a/content/events/2017-11-k-inbre-workshop/index.md b/content/events/2017-11-k-inbre-workshop/index.md index 4faa53cb00..03d3019e78 100644 --- a/content/events/2017-11-k-inbre-workshop/index.md +++ b/content/events/2017-11-k-inbre-workshop/index.md @@ -9,5 +9,5 @@ location_url: https://www.k-state.edu/ external_url: gtn: false contact: Sherry Miller -image: /src/images/logos/k-inbre.jpg +image: /images/logos/k-inbre.jpg --- diff --git a/content/events/2017-11-prabi-rna-seq/index.md b/content/events/2017-11-prabi-rna-seq/index.md index 495be38725..defa12c308 100644 --- a/content/events/2017-11-prabi-rna-seq/index.md +++ b/content/events/2017-11-prabi-rna-seq/index.md @@ -9,5 +9,5 @@ location_url: external_url: http://www.biosciencesco.fr/formations/bio-informatique/analyse-des-donnees-rna-seq-sous-lenvironnement-galaxy/ gtn: true contact: C. Oger, P. Veber, Dr. V. Lacroix -image: /src/images/logos/biosciences-and-co.png +image: /images/logos/biosciences-and-co.png --- diff --git a/content/events/2017-11-qfab-rna-seq/index.md b/content/events/2017-11-qfab-rna-seq/index.md index b6e0463431..6ec3a291f7 100644 --- a/content/events/2017-11-qfab-rna-seq/index.md +++ b/content/events/2017-11-qfab-rna-seq/index.md @@ -9,5 +9,5 @@ location_url: http://www.qfab.org/ external_url: http://www.qfab.org/workshops/rna-seq-analysis-using-galaxy-15-16-nov-2017 gtn: true contact: training@qfab.org -image: /src/images/logos/QFABLogo.png +image: /images/logos/QFABLogo.png --- diff --git a/content/events/2017-game-admin-training/index.md b/content/events/2017-game-admin-training/index.md index 6c258a4967..e079bffb1b 100644 --- a/content/events/2017-game-admin-training/index.md +++ b/content/events/2017-game-admin-training/index.md @@ -7,7 +7,7 @@ tease: at Galaxy Australasia Meeting Meeting continent: AU location: GAMe 2017, University of Melbourne, Melbourne, Victoria, Australia location_url: https://www.emblaustralia.org/events-speakers/public-events/game-2017-galaxy-australasia-meeting -image: /src/images/logos/game2017-admin-training-logo.png +image: /images/logos/game2017-admin-training-logo.png gtn: true contact: Enis Afgan, Nate Coraor, Bjoern Gruening, Simon Gladman, Ross Lazarus, --- diff --git a/content/events/2017-game-conf/index.md b/content/events/2017-game-conf/index.md index 14ac6fc2f5..512fd54054 100644 --- a/content/events/2017-game-conf/index.md +++ b/content/events/2017-game-conf/index.md @@ -7,7 +7,7 @@ tease: Galaxy Australasia Meeting continent: AU location: GAMe 2017, University of Melbourne, Melbourne, Victoria, Australia location_url: https://www.emblaustralia.org/events-speakers/public-events/game-2017-galaxy-australasia-meeting -image: /src/images/logos/GAMeLogo200.png +image: /images/logos/GAMeLogo200.png gtn: true contact: See web site. --- diff --git a/content/events/2017-game-training/index.md b/content/events/2017-game-training/index.md index bc860dd853..ad212839a4 100644 --- a/content/events/2017-game-training/index.md +++ b/content/events/2017-game-training/index.md @@ -6,7 +6,7 @@ tease: Galaxy Australasia Meeting continent: AU location: GAMe 2017, University of Melbourne, Melbourne, Victoria, Australia location_url: https://www.emblaustralia.org/events-speakers/public-events/game-2017-galaxy-australasia-meeting -image: /src/images/logos/GAMeLogo200.png +image: /images/logos/GAMeLogo200.png gtn: true contact: Simon Gladman, Pip Griffin, Jessica Chung, Clare Sloggett --- diff --git a/content/events/2017-genome-informatics/index.md b/content/events/2017-genome-informatics/index.md index 180931ca07..e6eea8a241 100644 --- a/content/events/2017-genome-informatics/index.md +++ b/content/events/2017-genome-informatics/index.md @@ -8,7 +8,7 @@ location: 'Genome Informatics, CSHL, New York, United States' location_url: https://meetings.cshl.edu/meetings.aspx?meet=INFO&year=17 external_url: gtn: false -image: /src/images/logos/CSHLLogo.jpg +image: /images/logos/CSHLLogo.jpg contact: "Presenters" --- diff --git a/content/events/2018-01-csusm-workshop/index.md b/content/events/2018-01-csusm-workshop/index.md index b11021c955..bbc1c27c9e 100644 --- a/content/events/2018-01-csusm-workshop/index.md +++ b/content/events/2018-01-csusm-workshop/index.md @@ -7,7 +7,7 @@ continent: NA location: "Cal State University San Marcos, United States" location_url: https://csusm.edu/ external_url: -image: /src/images/logos/csusm-logo.gif +image: /images/logos/csusm-logo.gif gtn: true contact: Arun Sethuraman, Dave Clements --- diff --git a/content/events/2018-02-aberdeen-rna-seq/index.md b/content/events/2018-02-aberdeen-rna-seq/index.md index ae533f66af..38631990f0 100644 --- a/content/events/2018-02-aberdeen-rna-seq/index.md +++ b/content/events/2018-02-aberdeen-rna-seq/index.md @@ -9,5 +9,5 @@ location_url: http://www.abdn.ac.uk/genomics/bioinformatics/training/ external_url: https://www.abdn.ac.uk/genomics/documents/201718_Workshops/RNA_Sequencing_2018.pdf gtn: true contact: Sophie Shaw -image: /src/images/logos/AberdeenLogoTrans.png +image: /images/logos/AberdeenLogoTrans.png --- diff --git a/content/events/2018-02-denbi-hts/index.md b/content/events/2018-02-denbi-hts/index.md index 3c9cd1cf29..e144b38399 100644 --- a/content/events/2018-02-denbi-hts/index.md +++ b/content/events/2018-02-denbi-hts/index.md @@ -6,7 +6,7 @@ tease: "Data analysis of RNA-seq, ChIP-seq, Exome-seq, MethylC-seq data" continent: EU location: University of Freiburg, Freiburg, Germany location_url: -image: /src/images/logos/deNBILogo.png +image: /images/logos/deNBILogo.png external_url: http://www.denbi.de/22-training-cat/training-courses/460-galaxy5 contact: Freiburg Galaxy Team gtn: true diff --git a/content/events/2018-03-aberdeen/index.md b/content/events/2018-03-aberdeen/index.md index e6e3b86b39..edbc852cc9 100644 --- a/content/events/2018-03-aberdeen/index.md +++ b/content/events/2018-03-aberdeen/index.md @@ -9,5 +9,5 @@ location_url: http://www.abdn.ac.uk/genomics/bioinformatics/training/ external_url: https://www.abdn.ac.uk/genomics/documents/201718_Workshops/Alignment_2018.pdf gtn: true contact: Sophie Shaw -image: /src/images/logos/AberdeenLogoTrans.png +image: /images/logos/AberdeenLogoTrans.png --- diff --git a/content/events/2018-03-denbi-rna-seq/index.md b/content/events/2018-03-denbi-rna-seq/index.md index 9e09ffb587..2d6e2b17d9 100644 --- a/content/events/2018-03-denbi-rna-seq/index.md +++ b/content/events/2018-03-denbi-rna-seq/index.md @@ -6,7 +6,7 @@ tease: "RNA-Seq, quality control, assembly, quantification, visualization" continent: EU location: Am Botanischen Garten, Kiel, Germany location_url: -image: /src/images/logos/deNBILogo.png +image: /images/logos/deNBILogo.png external_url: http://www.denbi.de/22-training-cat/training-courses/469-introduction-to-rna-seq-data-analysis-with-galaxy contact: Andrea Bagnacani, Markus Wolfien gtn: true diff --git a/content/events/2018-04-denbi-genomics/index.md b/content/events/2018-04-denbi-genomics/index.md index f6e80bc08a..709db8eb12 100644 --- a/content/events/2018-04-denbi-genomics/index.md +++ b/content/events/2018-04-denbi-genomics/index.md @@ -6,7 +6,7 @@ tease: "Microbial genomics: quality control, assembly, annotation & comparative continent: EU location: "Justus-Liebig-Universität, Gießen, Freiburg, Germany" location_url: "http://www.uni-giessen.de/index.html" -image: /src/images/logos/deNBILogo.png +image: /images/logos/deNBILogo.png external_url: http://www.denbi.de/22-training-cat/training-courses/513-4th-de-nbi-genomics-training-course contact: "denbi_genomics @ computational.bio" gtn: false diff --git a/content/events/2018-04-galaxy-africa/index.md b/content/events/2018-04-galaxy-africa/index.md index e3f53fac7d..fa6d730b06 100644 --- a/content/events/2018-04-galaxy-africa/index.md +++ b/content/events/2018-04-galaxy-africa/index.md @@ -7,7 +7,7 @@ continent: AF location: "SANBI, University of the Western Cape, Cape Town, South Africa" location_url: http://www.sanbi.ac.za/ external_url: http://galaxyafrica.sanbi.ac.za/ -image: "/src/events/2018-04-galaxy-africa/galaxy-africa-logo.svg" +image: "/events/2018-04-galaxy-africa/galaxy-africa-logo.svg" gtn: true contact: galaxyafrica @ sanbi . ac . za --- diff --git a/content/events/2018-05-qfab-rna-seq/index.md b/content/events/2018-05-qfab-rna-seq/index.md index a7fe76845d..9b493b89e5 100644 --- a/content/events/2018-05-qfab-rna-seq/index.md +++ b/content/events/2018-05-qfab-rna-seq/index.md @@ -9,5 +9,5 @@ location_url: http://www.qfab.org/ external_url: https://qfab.org/workshops/variant-detection-using-galaxy-15-16-may-2018 gtn: true contact: training@qfab.org -image: /src/images/logos/QFABLogo.png +image: /images/logos/QFABLogo.png --- diff --git a/content/events/2018-05-qfab-var/index.md b/content/events/2018-05-qfab-var/index.md index 4f2e865f47..c0e8e8c73b 100644 --- a/content/events/2018-05-qfab-var/index.md +++ b/content/events/2018-05-qfab-var/index.md @@ -9,5 +9,5 @@ location_url: http://www.qfab.org/ external_url: https://qfab.org/workshops/rna-seq-analysis-using-galaxy-1-2-may-2018 gtn: true contact: training@qfab.org -image: /src/images/logos/QFABLogo.png +image: /images/logos/QFABLogo.png --- diff --git a/content/events/2018-06-g-onramp/index.md b/content/events/2018-06-g-onramp/index.md index 019bcf9e4d..07cd34591e 100644 --- a/content/events/2018-06-g-onramp/index.md +++ b/content/events/2018-06-g-onramp/index.md @@ -5,7 +5,7 @@ days: 3 tease: create genome browsers for collaborative annotations of eukaryotic genomes continent: NA location: Washington University in St. Louis, Missouri, United States -image: /src/images/logos/WashULogoWide.jpg +image: /images/logos/WashULogoWide.jpg location_url: https://wustl.edu/ external_url: http://gonramp.wustl.edu/?page_id=724 contact: Jeremy Goecks, Sarah Elgin diff --git a/content/events/2018-07-g-onramp/index.md b/content/events/2018-07-g-onramp/index.md index d410c7f632..1458fb8397 100644 --- a/content/events/2018-07-g-onramp/index.md +++ b/content/events/2018-07-g-onramp/index.md @@ -5,7 +5,7 @@ days: 3 tease: create genome browsers for collaborative annotations of eukaryotic genomes continent: NA location: Washington University in St. Louis, Missouri, United States -image: /src/images/logos/WashULogoWide.jpg +image: /images/logos/WashULogoWide.jpg location_url: https://wustl.edu/ external_url: http://gonramp.wustl.edu/?page_id=724 contact: Jeremy Goecks, Sarah Elgin diff --git a/content/events/2018-08-qfab-rna-seq/index.md b/content/events/2018-08-qfab-rna-seq/index.md index 3701ae5875..ab33a3d484 100644 --- a/content/events/2018-08-qfab-rna-seq/index.md +++ b/content/events/2018-08-qfab-rna-seq/index.md @@ -9,5 +9,5 @@ location_url: https://qfab.org/ external_url: https://qfab.org/workshops/rna-seq-analysis-using-galaxy-7-8-august-2018 gtn: true contact: training@qfab.org -image: /src/images/logos/QFABLogo.png +image: /images/logos/QFABLogo.png --- diff --git a/content/events/2018-09-denbi-hts/index.md b/content/events/2018-09-denbi-hts/index.md index 1fa6c8fb4f..cd25091cbd 100644 --- a/content/events/2018-09-denbi-hts/index.md +++ b/content/events/2018-09-denbi-hts/index.md @@ -6,7 +6,7 @@ tease: "Data analysis of RNA-seq, ChIP-seq, Exome-seq, MethylC-seq data" continent: EU location: University of Freiburg, Freiburg, Germany location_url: -image: /src/images/logos/deNBILogo.png +image: /images/logos/deNBILogo.png external_url: contact: Freiburg Galaxy Team gtn: true diff --git a/content/events/2018-09-denbi-proteomics/index.md b/content/events/2018-09-denbi-proteomics/index.md index 7055147d30..782e6ae09a 100644 --- a/content/events/2018-09-denbi-proteomics/index.md +++ b/content/events/2018-09-denbi-proteomics/index.md @@ -6,7 +6,7 @@ tease: "How can I use Galaxy for Proteomics" continent: EU location: "ZBSA, Freiburg, Germany" location_url: -image: /src/images/logos/deNBILogo.png +image: /images/logos/deNBILogo.png external_url: "http://www.denbi.de/22-training-cat/training-courses/642-galaxy-for-proteomics-3" contact: "Björn Grüning" gtn: true diff --git a/content/events/2018-11-19-faes/index.md b/content/events/2018-11-19-faes/index.md index 95ae34c1df..f53701fcb2 100644 --- a/content/events/2018-11-19-faes/index.md +++ b/content/events/2018-11-19-faes/index.md @@ -6,7 +6,7 @@ tease: "Hands-on analysis of de novo transcriptome reconstruction" continent: NA location: "National Institutes of Health (NIH), Bethesda, Maryland, United States" external_url: https://faes.org/content/advanced-studies-bioinformatics-and-data-science -image: /src/images/logos/faes.png +image: /images/logos/faes.png gtn: false contact: Mo Heydarian --- diff --git a/content/events/2018-11-biohackathon/index.md b/content/events/2018-11-biohackathon/index.md index e09e2b8eb9..f864d06d4c 100644 --- a/content/events/2018-11-biohackathon/index.md +++ b/content/events/2018-11-biohackathon/index.md @@ -7,7 +7,7 @@ continent: EU location: "Campus des Berges de Seine, Paris, France" location_url: "https://www.chateauform.com/fr/maison/les-berges-de-seine/" external_url: "" -image: "/src/events/2018-11-biohackathon/biohack2018.png" +image: "/events/2018-11-biohackathon/biohack2018.png" gtn: False contact: "Bérénice Batut, Hervé Ménager" tags: [ cofest ] diff --git a/content/events/2018-11-prabi-rna-seq/index.md b/content/events/2018-11-prabi-rna-seq/index.md index 8d669e84d7..6cb51fe78f 100644 --- a/content/events/2018-11-prabi-rna-seq/index.md +++ b/content/events/2018-11-prabi-rna-seq/index.md @@ -9,5 +9,5 @@ location_url: external_url: https://www.biosciencesco.fr/formations/bio-informatique/analyse-des-donnees-rna-seq-sous-lenvironnement-galaxy/ gtn: true contact: contact @ biosciencesco . fr -image: /src/images/logos/biosciences-and-co.png +image: /images/logos/biosciences-and-co.png --- diff --git a/content/events/2018-12-metaproteome/index.md b/content/events/2018-12-metaproteome/index.md index aeebc84b7d..8a112d0c68 100644 --- a/content/events/2018-12-metaproteome/index.md +++ b/content/events/2018-12-metaproteome/index.md @@ -5,7 +5,7 @@ days: 3 tease: "4 talks using Galaxy for Metaproteomics" continent: EU location: "Helmholtz-UFZ, Leipzig Germany" -image: "/src/events/2018-12-metaproteome/2018-metaproteomics-symposium.png" +image: "/events/2018-12-metaproteome/2018-metaproteomics-symposium.png" location_url: "https://fems-microbiology.org/opportunities/3rd-international-metaproteome-symposium-2018-3-5-december-2018-germany/" external_url: contact: "Pratik Jagtap, Tim Griffin, Magnus Arntzen, Praveen Kumar" diff --git a/content/events/2018-abrf/index.md b/content/events/2018-abrf/index.md index 23932c8b70..bb0c45e693 100644 --- a/content/events/2018-abrf/index.md +++ b/content/events/2018-abrf/index.md @@ -7,7 +7,7 @@ continent: NA location: "ABRF 2018, Myrtle Beach, South Carolina, United States" location_url: http://conf.abrf.org/ external_url: http://conf.abrf.org/sw2-galaxy-platform-accessible-core-laboratory-solution-proteogenomic-analysis-and-informatics -image: /src/images/logos/ABRFLogoSquareSmall.png +image: /images/logos/ABRFLogoSquareSmall.png gtn: true contact: Pratik Jagtap --- diff --git a/content/events/2018-biosb/index.md b/content/events/2018-biosb/index.md index 270fe6c0c6..e4c1f3d0fc 100644 --- a/content/events/2018-biosb/index.md +++ b/content/events/2018-biosb/index.md @@ -9,7 +9,7 @@ location_url: external_url: http://biosb.nl/wp-content/uploads/2018/05/abstract_book.pdf gtn: false contact: -image: /src/images/logos/biosb-logo.png +image: /images/logos/biosb-logo.png --- | Presentation | Presenter | diff --git a/content/events/2018-carpentrycon/index.md b/content/events/2018-carpentrycon/index.md index d561c55231..e1c4305cdf 100644 --- a/content/events/2018-carpentrycon/index.md +++ b/content/events/2018-carpentrycon/index.md @@ -5,7 +5,7 @@ days: 3 tease: "" continent: EU location: CarpentryCon 2018, University College, Dublin, Ireland -image: /src/images/logos/carpentries-logo-trans-200.png +image: /images/logos/carpentries-logo-trans-200.png location_url: http://www.carpentrycon.org/ contact: Bérénice Batut gtn: false diff --git a/content/events/2018-csh-bds/index.md b/content/events/2018-csh-bds/index.md index ffb66f8e6f..83874c725e 100644 --- a/content/events/2018-csh-bds/index.md +++ b/content/events/2018-csh-bds/index.md @@ -8,7 +8,7 @@ location: "Cold Spring Harbor, New York, USA" location_url: "https://meetings.cshl.edu/meetings.aspx?meet=DATA&year=18" gtn: false contact: Presenters -image: "/src/images/logos/CSHLLogo.jpg" +image: "/images/logos/CSHLLogo.jpg" --- Galaxy will be featured several presentations at the [Cold Spring Harbor 2018 Biological Data Science meeting](https://meetings.cshl.edu/meetings.aspx?meet=DATA&year=18). diff --git a/content/events/2018-eccb/index.md b/content/events/2018-eccb/index.md index 74b218990f..09dc2f1b81 100644 --- a/content/events/2018-eccb/index.md +++ b/content/events/2018-eccb/index.md @@ -6,7 +6,7 @@ tease: "The Galaxy user interface and how to analyze large datasets" continent: EU location: "ECCB 2018, Athens, Greece" location_url: "http://eccb18.org/" -image: /src/events/2018-eccb/eccb-2018-logo.png +image: /events/2018-eccb/eccb-2018-logo.png external_url: "https://docs.google.com/document/d/19po6ch62nxDxpFIDpvqR4YY1SmBDC-UJ8Z5bouYgo3A/edit#heading=h.4si4fttfjumz" contact: "Björn Grüning" gtn: true diff --git a/content/events/2018-eresearch/index.md b/content/events/2018-eresearch/index.md index 6df1aeabad..c1326198f0 100644 --- a/content/events/2018-eresearch/index.md +++ b/content/events/2018-eresearch/index.md @@ -8,7 +8,7 @@ location: "Melbourne, Victoria, Australia" location_url: "https://conference.eresearch.edu.au/" gtn: true contact: Presenters -image: "/src/events/2018-eresearch/eresearch-australasia-2018.png" +image: "/events/2018-eresearch/eresearch-australasia-2018.png" --- Galaxy will be featured several presentations at [eResearch Australasia 2018](https://conference.eresearch.edu.au/), including a workshop. diff --git a/content/events/2018-europe-dev/index.md b/content/events/2018-europe-dev/index.md index 3b040ddf5d..8bdceaabf6 100644 --- a/content/events/2018-europe-dev/index.md +++ b/content/events/2018-europe-dev/index.md @@ -7,7 +7,7 @@ continent: EU location: Freiburg, Germany location_url: external_url: -image: /src/events/2018-europe-dev/2018-europe-logo.small.png +image: /events/2018-europe-dev/2018-europe-logo.small.png gtn: false contact: Hans-Rudolf Hotz, Björn Grüning, Jean-François Dufayard --- diff --git a/content/events/2018-gcb/index.md b/content/events/2018-gcb/index.md index 72e371451e..8b0c6eda14 100644 --- a/content/events/2018-gcb/index.md +++ b/content/events/2018-gcb/index.md @@ -4,7 +4,7 @@ date: '2018-09-25' days: 4 continent: EU location: "German Conference on Bioinformatics (GCB), University of Vienna, Vienna, Austria" -image: "/src/events/2018-gcb/gcb-2018-wide.png" +image: "/events/2018-gcb/gcb-2018-wide.png" location_url: "https://gcb2018.csb.univie.ac.at/" external_url: contact: "Presenters" diff --git a/content/events/2018-icsb/index.md b/content/events/2018-icsb/index.md index 927e53552e..dabdf69c48 100644 --- a/content/events/2018-icsb/index.md +++ b/content/events/2018-icsb/index.md @@ -7,7 +7,7 @@ continent: EU location: "International Conference on Systems Biology, Lyon, France" location_url: "http://icsb2018-france.com/" external_url: "" -image: "/src/events/2018-icsb/logo_icsb_2018.jpg" +image: "/events/2018-icsb/logo_icsb_2018.jpg" gtn: False contact: " Sheng-Yao Su, Blandine Comte" --- diff --git a/content/events/2018-itcr/index.md b/content/events/2018-itcr/index.md index b1c60de147..ade0699755 100644 --- a/content/events/2018-itcr/index.md +++ b/content/events/2018-itcr/index.md @@ -9,7 +9,7 @@ location_url: "https://itcr.cancer.gov/about-itcr/news/itcr-2018-annual-meeting- external_url: gtn: false contact: -image: /src/images/logos/nih-nci-itcr-wide.png +image: /images/logos/nih-nci-itcr-wide.png --- Galaxy had a large presence at the [2018 Informatics Technology for Cancer Research (ITCR) meeting](https://itcr.cancer.gov/about-itcr/news/itcr-2018-annual-meeting-presentations-now-available#): diff --git a/content/events/2018-pag/index.md b/content/events/2018-pag/index.md index 9ef98a2d0f..99b9201706 100644 --- a/content/events/2018-pag/index.md +++ b/content/events/2018-pag/index.md @@ -8,7 +8,7 @@ location: San Diego, California location_url: http://www.intlpag.org/ gtn: true contact: Presenters -image: /src/events/2018-pag/galaxy-at-pag-2018.png +image: /events/2018-pag/galaxy-at-pag-2018.png tags: [ cofest ] --- diff --git a/content/events/2019-01-faes/index.md b/content/events/2019-01-faes/index.md index 12137e7571..e8f75415cf 100644 --- a/content/events/2019-01-faes/index.md +++ b/content/events/2019-01-faes/index.md @@ -7,7 +7,7 @@ continent: NA location: "National Institutes of Health, Bethesda, Maryland, United States" location_url: external_url: "https://faes.org/biotech82" -image: "/src/images/logos/faes.png" +image: "/images/logos/faes.png" gtn: false contact: "registration @ faes . org" --- diff --git a/content/events/2019-01-gwu/index.md b/content/events/2019-01-gwu/index.md index c37fc88487..1ec4ec6f38 100644 --- a/content/events/2019-01-gwu/index.md +++ b/content/events/2019-01-gwu/index.md @@ -5,7 +5,7 @@ days: 1 tease: "A hands-on workshop" continent: NA location: "Washington, DC" -image: "/src/images/logos/GWUlogo.png" +image: "/images/logos/GWUlogo.png" gtn: true contact: "Dr. Ian Toma (itoma at gwu dot edu)" --- diff --git a/content/events/2019-01-rna-seq-denbi/index.md b/content/events/2019-01-rna-seq-denbi/index.md index bfa19c87ac..08006a130a 100644 --- a/content/events/2019-01-rna-seq-denbi/index.md +++ b/content/events/2019-01-rna-seq-denbi/index.md @@ -6,7 +6,7 @@ tease: "Želite li da naučite kako analizirati genomičke podatke?" continent: EU location: "Belgrade, Servia" location_url: "https://www.denbi.de/training/515-galaxy-workshop" -image: "/src/images/logos/deNBILogo.png" +image: "/images/logos/deNBILogo.png" external_url: "https://www.denbi.de/training/515-galaxy-workshop" contact: "destair [at] leibniz-fli.de" gtn: true diff --git a/content/events/2019-03-bisulfite-denbi/index.md b/content/events/2019-03-bisulfite-denbi/index.md index 44886dbf21..84ce18759f 100644 --- a/content/events/2019-03-bisulfite-denbi/index.md +++ b/content/events/2019-03-bisulfite-denbi/index.md @@ -6,7 +6,7 @@ tease: "Learn Galaxy and tools for data handling and preprocessing, differential continent: EU location: "University of Rostock, Rostock, Germany" location_url: -image: /src/images/logos/deNBILogo.png +image: /images/logos/deNBILogo.png external_url: "https://www.denbi.de/training/532-galaxy-for-linking-bisulfite-sequencing-with-rna-sequencing" contact: "destair [at] leibniz-fli.de" gtn: true diff --git a/content/events/2019-03-genomisr/index.md b/content/events/2019-03-genomisr/index.md index 80a2c13bed..a9f8278a8c 100644 --- a/content/events/2019-03-genomisr/index.md +++ b/content/events/2019-03-genomisr/index.md @@ -9,7 +9,7 @@ location_url: "" external_url: "https://www.facebook.com/events/392829814603666/" gtn: false contact: "Abdelazeem Abdelhameed Elhabyan" -image: "/src/events/2019-03-genomisr/genomisr-workshop.jpg" +image: "/events/2019-03-genomisr/genomisr-workshop.jpg" --- **Program** diff --git a/content/events/2019-04-bioit/index.md b/content/events/2019-04-bioit/index.md index bfb686c2f5..3e92b700b3 100644 --- a/content/events/2019-04-bioit/index.md +++ b/content/events/2019-04-bioit/index.md @@ -7,7 +7,7 @@ continent: NA location: "BioIT World, Boston, Massachusetts, United States" location_url: "http://www.giiconference.com/chi653337/" external_url: -image: /src/events/2019-04-bioit/bioitworld19.png +image: /events/2019-04-bioit/bioitworld19.png gtn: false contact: "Presenters" contact_url: "/people/jeremy-goecks/" diff --git a/content/events/2019-04-faes/index.md b/content/events/2019-04-faes/index.md index f9315babe3..078bf551f8 100644 --- a/content/events/2019-04-faes/index.md +++ b/content/events/2019-04-faes/index.md @@ -6,7 +6,7 @@ tease: "Hands-on analysis of genome assembly and annotation" continent: NA location: "National Institutes of Health (NIH), Bethesda, Maryland, United States" external_url: https://faes.org/content/advanced-studies-bioinformatics-and-data-science -image: /src/images/logos/faes.png +image: /images/logos/faes.png gtn: true contact: Mo Heydarian --- diff --git a/content/events/2019-04-migale-intro/index.md b/content/events/2019-04-migale-intro/index.md index 46837d6843..d12903e865 100644 --- a/content/events/2019-04-migale-intro/index.md +++ b/content/events/2019-04-migale-intro/index.md @@ -5,7 +5,7 @@ days: 1 tease: 'Part of Cycle "Bioinformatique par la pratique" 2019' continent: EU location: 'Cycle "Bioinformatique par la pratique" 2019, INRA, Jouy-en-Josas, France' -image: /src/images/logos/MIGALELogo.png +image: /images/logos/MIGALELogo.png location_url: "http://migale.jouy.inra.fr/?q=formations" external_url: "http://migale.jouy.inra.fr/sites/all/downloads/Migale/Formations/2019/module8bis.pdf" gtn: true diff --git a/content/events/2019-04-qfab-assembly/index.md b/content/events/2019-04-qfab-assembly/index.md index d8303d2772..33e527db89 100644 --- a/content/events/2019-04-qfab-assembly/index.md +++ b/content/events/2019-04-qfab-assembly/index.md @@ -8,7 +8,7 @@ location: QFAB, St Lucia, Queensland, Australia location_url: https://qfab.org/ external_url: "https://qfab.org/training#NGS_Workshops" contact: 'training@qfab.org' -image: "/src/images/logos/QFABLogo.png" +image: "/images/logos/QFABLogo.png" gtn: true --- diff --git a/content/events/2019-04-qfab-intro/index.md b/content/events/2019-04-qfab-intro/index.md index 253ff8287e..29836e0c3b 100644 --- a/content/events/2019-04-qfab-intro/index.md +++ b/content/events/2019-04-qfab-intro/index.md @@ -8,7 +8,7 @@ location: QFAB, St Lucia, Queensland, Australia location_url: https://qfab.org/ external_url: "https://qfab.org/training#NGS_Workshops" contact: 'training@qfab.org' -image: "/src/images/logos/QFABLogo.png" +image: "/images/logos/QFABLogo.png" gtn: true --- diff --git a/content/events/2019-04-qfab-metagenomics/index.md b/content/events/2019-04-qfab-metagenomics/index.md index 0a86d09449..bb029928fa 100644 --- a/content/events/2019-04-qfab-metagenomics/index.md +++ b/content/events/2019-04-qfab-metagenomics/index.md @@ -8,7 +8,7 @@ location: QFAB, St Lucia, Queensland, Australia location_url: https://qfab.org/ external_url: "https://qfab.org/training#NGS_Workshops" contact: 'training@qfab.org' -image: "/src/images/logos/QFABLogo.png" +image: "/images/logos/QFABLogo.png" gtn: true --- diff --git a/content/events/2019-04-qfab-rna-seq/index.md b/content/events/2019-04-qfab-rna-seq/index.md index d2d23c084f..ba09b56c1b 100644 --- a/content/events/2019-04-qfab-rna-seq/index.md +++ b/content/events/2019-04-qfab-rna-seq/index.md @@ -8,7 +8,7 @@ location: QFAB, St Lucia, Queensland, Australia location_url: https://qfab.org/ external_url: "https://qfab.org/training#NGS_Workshops" contact: 'training@qfab.org' -image: "/src/images/logos/QFABLogo.png" +image: "/images/logos/QFABLogo.png" gtn: true --- diff --git a/content/events/2019-04-qfab-variant/index.md b/content/events/2019-04-qfab-variant/index.md index d4585be71b..9661f9e9e8 100644 --- a/content/events/2019-04-qfab-variant/index.md +++ b/content/events/2019-04-qfab-variant/index.md @@ -8,7 +8,7 @@ location: QFAB, St Lucia, Queensland, Australia location_url: https://qfab.org/ external_url: "https://qfab.org/training#NGS_Workshops" contact: 'training@qfab.org' -image: "/src/images/logos/QFABLogo.png" +image: "/images/logos/QFABLogo.png" gtn: true --- diff --git a/content/events/2019-05-migale-intro/index.md b/content/events/2019-05-migale-intro/index.md index af5aa91e00..fa0060b938 100644 --- a/content/events/2019-05-migale-intro/index.md +++ b/content/events/2019-05-migale-intro/index.md @@ -5,7 +5,7 @@ days: 1 tease: 'Part of Cycle "Bioinformatique par la pratique" 2019' continent: EU location: 'Cycle "Bioinformatique par la pratique" 2019, INRA, Jouy-en-Josas, France' -image: /src/images/logos/MIGALELogo.png +image: /images/logos/MIGALELogo.png location_url: "http://migale.jouy.inra.fr/?q=formations" external_url: "http://migale.jouy.inra.fr/sites/all/downloads/Migale/Formations/2019/module17.pdf" gtn: true diff --git a/content/events/2019-05-migale-ngs/index.md b/content/events/2019-05-migale-ngs/index.md index 33f3b1fb15..2145ff66c1 100644 --- a/content/events/2019-05-migale-ngs/index.md +++ b/content/events/2019-05-migale-ngs/index.md @@ -5,7 +5,7 @@ days: 1 tease: 'Part of Cycle "Bioinformatique par la pratique" 2019' continent: EU location: 'Cycle "Bioinformatique par la pratique" 2019, INRA, Jouy-en-Josas, France' -image: /src/images/logos/MIGALELogo.png +image: /images/logos/MIGALELogo.png location_url: "http://migale.jouy.inra.fr/?q=formations" external_url: "http://migale.jouy.inra.fr/sites/all/downloads/Migale/Formations/2019/module17-avril.pdf" gtn: true diff --git a/content/events/2019-06-faes/index.md b/content/events/2019-06-faes/index.md index 35be4295c9..e9e0911297 100644 --- a/content/events/2019-06-faes/index.md +++ b/content/events/2019-06-faes/index.md @@ -6,7 +6,7 @@ tease: "4-Day Hands On Workshop" continent: NA location: "National Institutes of Health (NIH), Bethesda, Maryland, United States" external_url: "https://faes.org/biotech82june" -image: /src/images/logos/faes.png +image: /images/logos/faes.png gtn: false contact: training@faes.org --- diff --git a/content/events/2019-06-migale-rnaseq/index.md b/content/events/2019-06-migale-rnaseq/index.md index ce4e109fb7..10cb175494 100644 --- a/content/events/2019-06-migale-rnaseq/index.md +++ b/content/events/2019-06-migale-rnaseq/index.md @@ -5,7 +5,7 @@ days: 3 tease: 'Part of Cycle "Bioinformatique par la pratique" 2019' continent: EU location: 'Cycle "Bioinformatique par la pratique" 2019, INRA, Jouy-en-Josas, France' -image: /src/images/logos/MIGALELogo.png +image: /images/logos/MIGALELogo.png location_url: "http://migale.jouy.inra.fr/?q=formations" external_url: "http://migale.jouy.inra.fr/sites/all/downloads/Migale/Formations/2019/module23.pdf" gtn: true diff --git a/content/events/2019-06-nels/index.md b/content/events/2019-06-nels/index.md index 7cf43e5e8a..980c874c64 100644 --- a/content/events/2019-06-nels/index.md +++ b/content/events/2019-06-nels/index.md @@ -5,7 +5,7 @@ days: 1 tease: 'Hnds-on-workshop' continent: EU location: 'University of Oslo, Oslo, Norway' -image: /src/images/logos/MIGALELogo.png +image: /images/logos/MIGALELogo.png location_url: "http://www.uio.no/om/finn-fram/omrader/gaustad/ga06/" external_url: "https://nettskjema.uio.no/a/118776" gtn: true diff --git a/content/events/2019-07-jobim/index.md b/content/events/2019-07-jobim/index.md index 833b41ecc6..7be81c801d 100644 --- a/content/events/2019-07-jobim/index.md +++ b/content/events/2019-07-jobim/index.md @@ -8,7 +8,7 @@ location: "Nantes, France" location_url: "https://jobim2019.sciencesconf.org/" gtn: false contact: "Presenters" -image: "/src/events/2019-07-jobim/jobim-2019-logo.jpg" +image: "/events/2019-07-jobim/jobim-2019-logo.jpg" --- Galaxy will be presented at [JOBIM 2019](https://jobim2019.sciencesconf.org/), in Nantes, France, 2-5 July. This includes at least two talks and a poster. Here's what we know about so far: diff --git a/content/events/2019-07-qfab-assembly/index.md b/content/events/2019-07-qfab-assembly/index.md index a3a7ef5b5d..cc8f3aac37 100644 --- a/content/events/2019-07-qfab-assembly/index.md +++ b/content/events/2019-07-qfab-assembly/index.md @@ -8,7 +8,7 @@ location: "Translational Research Institute (TRI), Woolloongabba, Queensland, Au location_url: "https://www.tri.edu.au/" external_url: "https://qfab.org/training#NGS_Workshops" contact: 'training@qfab.org' -image: "/src/images/logos/QFABLogo.png" +image: "/images/logos/QFABLogo.png" gtn: true --- diff --git a/content/events/2019-07-qfab-intro/index.md b/content/events/2019-07-qfab-intro/index.md index 2bec45d0dc..ab8cf516a0 100644 --- a/content/events/2019-07-qfab-intro/index.md +++ b/content/events/2019-07-qfab-intro/index.md @@ -8,7 +8,7 @@ location: "Translational Research Institute (TRI), Woolloongabba, Queensland, Au location_url: "https://www.tri.edu.au/" external_url: "https://qfab.org/training#NGS_Workshops" contact: 'training@qfab.org' -image: "/src/images/logos/QFABLogo.png" +image: "/images/logos/QFABLogo.png" gtn: true --- diff --git a/content/events/2019-07-qfab-rna-seq/index.md b/content/events/2019-07-qfab-rna-seq/index.md index 6d2ccb7f53..686a740c76 100644 --- a/content/events/2019-07-qfab-rna-seq/index.md +++ b/content/events/2019-07-qfab-rna-seq/index.md @@ -8,7 +8,7 @@ location: "Translational Research Institute (TRI), Woolloongabba, Queensland, Au location_url: "https://www.tri.edu.au/" external_url: "https://qfab.org/training#NGS_Workshops" contact: 'training@qfab.org' -image: "/src/images/logos/QFABLogo.png" +image: "/images/logos/QFABLogo.png" gtn: true --- diff --git a/content/events/2019-08-qfab-metagenomics/index.md b/content/events/2019-08-qfab-metagenomics/index.md index 7afdb37031..53f69f8a16 100644 --- a/content/events/2019-08-qfab-metagenomics/index.md +++ b/content/events/2019-08-qfab-metagenomics/index.md @@ -8,7 +8,7 @@ location: "Translational Research Institute (TRI), Woolloongabba, Queensland, Au location_url: "https://www.tri.edu.au/" external_url: "https://qfab.org/training#NGS_Workshops" contact: 'training@qfab.org' -image: "/src/images/logos/QFABLogo.png" +image: "/images/logos/QFABLogo.png" gtn: true --- diff --git a/content/events/2019-08-qfab-variant/index.md b/content/events/2019-08-qfab-variant/index.md index 96e19e5532..cf1a99dc12 100644 --- a/content/events/2019-08-qfab-variant/index.md +++ b/content/events/2019-08-qfab-variant/index.md @@ -8,7 +8,7 @@ location: QFAB, St Lucia, Queensland, Australia location_url: https://qfab.org/ external_url: "https://qfab.org/training#NGS_Workshops" contact: 'training@qfab.org' -image: "/src/images/logos/QFABLogo.png" +image: "/images/logos/QFABLogo.png" gtn: true --- diff --git a/content/events/2019-09-gcb/index.md b/content/events/2019-09-gcb/index.md index 8fa259e120..d6286f4115 100644 --- a/content/events/2019-09-gcb/index.md +++ b/content/events/2019-09-gcb/index.md @@ -4,7 +4,7 @@ date: '2019-09-16' days: 4 continent: EU location: "German Conference on Bioinformatics (GCB), Heidelberg, Germany" -image: "/src/events/2019-09-gcb/gcb-2019-wide.png" +image: "/events/2019-09-gcb/gcb-2019-wide.png" location_url: "https://gcb2019.de/" external_url: contact: "Presenters" diff --git a/content/events/2019-09-incob/index.md b/content/events/2019-09-incob/index.md index 61e1ed9187..d29746dbe0 100644 --- a/content/events/2019-09-incob/index.md +++ b/content/events/2019-09-incob/index.md @@ -8,7 +8,7 @@ location: "InCoB 2019, Jakarta, Indonesia" location_url: "http://incob2019.org/" external_url: "" contact: "Simon Gladman, Gareth Price, Nuwan Goonesekera, Dave Clements" -image: "/src/events/2019-09-incob/incob-logo-square.jpeg" +image: "/events/2019-09-incob/incob-logo-square.jpeg" gtn: true --- diff --git a/content/events/2019-09-qfab-assembly/index.md b/content/events/2019-09-qfab-assembly/index.md index 895b52abac..f597dc3216 100644 --- a/content/events/2019-09-qfab-assembly/index.md +++ b/content/events/2019-09-qfab-assembly/index.md @@ -8,7 +8,7 @@ location: QFAB, St Lucia, Queensland, Australia location_url: https://qfab.org/ external_url: "https://qfab.org/training#NGS_Workshops" contact: 'training@qfab.org' -image: "/src/images/logos/QFABLogo.png" +image: "/images/logos/QFABLogo.png" gtn: true --- diff --git a/content/events/2019-09-qfab-intro/index.md b/content/events/2019-09-qfab-intro/index.md index f2ddb79384..5d4de6b5ba 100644 --- a/content/events/2019-09-qfab-intro/index.md +++ b/content/events/2019-09-qfab-intro/index.md @@ -7,7 +7,7 @@ location: QFAB, St Lucia, Queensland, Australia location_url: https://qfab.org/ external_url: "https://qfab.org/training#NGS_Workshops" contact: 'training@qfab.org' -image: "/src/images/logos/QFABLogo.png" +image: "/images/logos/QFABLogo.png" gtn: true --- diff --git a/content/events/2019-09-qfab-metagenomics/index.md b/content/events/2019-09-qfab-metagenomics/index.md index ce9db63a59..31637b8c89 100644 --- a/content/events/2019-09-qfab-metagenomics/index.md +++ b/content/events/2019-09-qfab-metagenomics/index.md @@ -8,7 +8,7 @@ location: "QFAB, St Lucia, Queensland, Australia" location_url: https://qfab.org/ external_url: "https://qfab.org/training#NGS_Workshops" contact: 'training@qfab.org' -image: "/src/images/logos/QFABLogo.png" +image: "/images/logos/QFABLogo.png" gtn: true --- diff --git a/content/events/2019-09-qfab-rna-seq/index.md b/content/events/2019-09-qfab-rna-seq/index.md index bdc525b0f6..51b1498bf2 100644 --- a/content/events/2019-09-qfab-rna-seq/index.md +++ b/content/events/2019-09-qfab-rna-seq/index.md @@ -8,7 +8,7 @@ location: "QFAB, St Lucia, Queensland, Australia" location_url: https://qfab.org/ external_url: "https://qfab.org/training#NGS_Workshops" contact: 'training@qfab.org' -image: "/src/images/logos/QFABLogo.png" +image: "/images/logos/QFABLogo.png" gtn: true --- diff --git a/content/events/2019-09-qfab-variant/index.md b/content/events/2019-09-qfab-variant/index.md index f9df04e1e6..879bac9fa7 100644 --- a/content/events/2019-09-qfab-variant/index.md +++ b/content/events/2019-09-qfab-variant/index.md @@ -8,7 +8,7 @@ location: "QFAB, St Lucia, Queensland, Australia" location_url: https://qfab.org/ external_url: "https://qfab.org/training#NGS_Workshops" contact: 'training@qfab.org' -image: "/src/images/logos/QFABLogo.png" +image: "/images/logos/QFABLogo.png" gtn: true --- diff --git a/content/events/2019-10-aises/index.md b/content/events/2019-10-aises/index.md index 407609c87b..0e92a56edb 100644 --- a/content/events/2019-10-aises/index.md +++ b/content/events/2019-10-aises/index.md @@ -9,7 +9,7 @@ location_url: "https://conference.aises.org/agenda" external_url: "" gtn: true contact: "Mo Heydarian, Dave Clements" -image: /src/events/2019-10-aises/aises-2019-banner.png +image: /events/2019-10-aises/aises-2019-banner.png --- **9:30 - 11:20, Friday, October 11, Room 202 A** diff --git a/content/events/2019-10-bisulfite-denbi/index.md b/content/events/2019-10-bisulfite-denbi/index.md index a13f81b63c..8740e63b01 100644 --- a/content/events/2019-10-bisulfite-denbi/index.md +++ b/content/events/2019-10-bisulfite-denbi/index.md @@ -6,7 +6,7 @@ tease: "Learn Galaxy and tools for data handling and preprocessing, differential continent: EU location: "Albert-Ludwigs-Universität Freiburg, Freiburg, Germany" location_url: -image: /src/images/logos/deNBILogo.png +image: /images/logos/deNBILogo.png external_url: "https://www.denbi.de/training/663-galaxy-for-linking-bisulfite-sequencing-with-rna-sequencing" contact: "destair [at] leibniz-fli.de" gtn: true diff --git a/content/events/2019-10-galaxynl/index.md b/content/events/2019-10-galaxynl/index.md index 1c9304a7c4..4247698a42 100644 --- a/content/events/2019-10-galaxynl/index.md +++ b/content/events/2019-10-galaxynl/index.md @@ -9,7 +9,7 @@ location_url: "" external_url: gtn: false contact: "Saskia Hiltemann" -image: "/src/images/logos/galaxy-nl-big.png" +image: "/images/logos/galaxy-nl-big.png" --- **Time:** October 3, 13:30-16:00, with drinks afterwards
diff --git a/content/events/2019-11-galaxy-africa/index.md b/content/events/2019-11-galaxy-africa/index.md index 5ae0c1eb79..9c232ede91 100644 --- a/content/events/2019-11-galaxy-africa/index.md +++ b/content/events/2019-11-galaxy-africa/index.md @@ -9,5 +9,5 @@ location_url: "" external_url: "https://www.iscb.org/iscbafrica2019-ps/iscbafrica2019-worktut#galaxy" gtn: false contact: "Peter van Heusden" -image: "/src/images/galaxy-logos/galaxy-africa-logo-big.png" +image: "/images/galaxy-logos/galaxy-africa-logo-big.png" --- diff --git a/content/events/2019-11-qfab-rna-seq/index.md b/content/events/2019-11-qfab-rna-seq/index.md index 139f4816de..00954e00b4 100644 --- a/content/events/2019-11-qfab-rna-seq/index.md +++ b/content/events/2019-11-qfab-rna-seq/index.md @@ -8,7 +8,7 @@ location: "Translational Research Institute, Woolloongabba, Queensland, Australi location_url: external_url: "https://www.eventbrite.com.au/e/rna-seq-analysis-with-galaxy-and-r-tickets-73768869675" contact: 'training@qfab.org' -image: "/src/images/logos/QFABLogo.png" +image: "/images/logos/QFABLogo.png" gtn: true --- diff --git a/content/events/2019-admin-training/index.md b/content/events/2019-admin-training/index.md index b023d0f0d0..0bd9e9a275 100644 --- a/content/events/2019-admin-training/index.md +++ b/content/events/2019-admin-training/index.md @@ -9,7 +9,7 @@ location_url: "https://www.psu.edu/" external_url: gtn: true contact: Instructors -image: /src/events/2019-admin-training/2019-admin-training-logo.png +image: /events/2019-admin-training/2019-admin-training-logo.png --- **[Galaxy Admin Training](https://github.com/galaxyproject/dagobah-training)** will be offered January 28 through February 1 at Penn State University, where the Galaxy Project got started over ten years ago. The workshop is split into a [2 day introductory session](https://github.com/galaxyproject/dagobah-training#basic-sessions) and a [3 day advanced topics session](https://github.com/galaxyproject/dagobah-training#advanced-sessions). Participants can register for one or both sessions. diff --git a/content/events/2019-asmcue/index.md b/content/events/2019-asmcue/index.md index cf4e5dec36..92b296ad7f 100644 --- a/content/events/2019-asmcue/index.md +++ b/content/events/2019-asmcue/index.md @@ -8,7 +8,7 @@ location: "ASMCUE 2019, Tyson, Virginia, United States" external_url: "" location_url: "https://www.asm.org/Events/ASM-Conference-for-Undergraduate-Educators/Home" contact: 'Mohammad Heydarian, Anton Nekrutenko' -image: "/src/events/2019-asmcue/asmcue-2019.jpg" +image: "/events/2019-asmcue/asmcue-2019.jpg" gtn: true --- diff --git a/content/events/2019-genome-informatics/index.md b/content/events/2019-genome-informatics/index.md index a656385f94..d2f9e32dc9 100644 --- a/content/events/2019-genome-informatics/index.md +++ b/content/events/2019-genome-informatics/index.md @@ -8,7 +8,7 @@ location: 'Genome Informatics, CSHL, New York, United States' location_url: https://meetings.cshl.edu/meetings.aspx?meet=INFO&year=19 external_url: gtn: false -image: /src/images/logos/CSHLLogo.jpg +image: /images/logos/CSHLLogo.jpg contact: "Presenters" --- diff --git a/content/events/2019-ismb/index.md b/content/events/2019-ismb/index.md index 3ed0be659e..531db0c454 100644 --- a/content/events/2019-ismb/index.md +++ b/content/events/2019-ismb/index.md @@ -5,7 +5,7 @@ days: 5 tease: "" continent: EU location: "ISMB/ECCB 2019, Basel, Switzerland" -image: "/src/events/2019-ismb/ismbeccb2019.jpeg" +image: "/events/2019-ismb/ismbeccb2019.jpeg" location_url: "https://www.iscb.org/ismbeccb2019-program/" external_url: contact: 'Presenters' diff --git a/content/events/2019-pag/index.md b/content/events/2019-pag/index.md index 484f4f5666..2b89a4d60e 100644 --- a/content/events/2019-pag/index.md +++ b/content/events/2019-pag/index.md @@ -8,7 +8,7 @@ location: San Diego, California location_url: http://www.intlpag.org/ gtn: false contact: Presenters -image: /src/events/2019-pag/pag2019.png +image: /events/2019-pag/pag2019.png --- Galaxy will be at [Plant and Animal Genome XXVII (PAG 20189](http://www.intlpag.org/), in San Diego, California, United States, January 12-16. This includes a Galaxy Workshop as well as other talks and posters featuring Galaxy. Here's what we know about: diff --git a/content/events/2019-sacnas/index.md b/content/events/2019-sacnas/index.md index 118d4f166f..fd178534b9 100644 --- a/content/events/2019-sacnas/index.md +++ b/content/events/2019-sacnas/index.md @@ -56,8 +56,8 @@ The goals of this workshop are to ## Instructors -- [Dave Clements](/people/dave-clements/), [Galaxy Project](/src/) and [Johns Hopkins University](http://jhu.edu) -- [Mo Heydarian](/people/mo-heydarian/), [Galaxy Project](/src/) and [Johns Hopkins University](http://jhu.edu) +- [Dave Clements](/people/dave-clements/), [Galaxy Project](/) and [Johns Hopkins University](http://jhu.edu) +- [Mo Heydarian](/people/mo-heydarian/), [Galaxy Project](/) and [Johns Hopkins University](http://jhu.edu) ## Registration diff --git a/content/events/2020-02-denbi-hts/index.md b/content/events/2020-02-denbi-hts/index.md index ae68eed47d..d49292bebe 100644 --- a/content/events/2020-02-denbi-hts/index.md +++ b/content/events/2020-02-denbi-hts/index.md @@ -6,7 +6,7 @@ tease: "1-week full-day hands-on workshop on analysis of RNA-seq, ChIP-seq, Exom continent: EU location: "University of Freiburg, Freiburg, Germany" location_url: -image: /src/images/logos/deNBILogo.png +image: /images/logos/deNBILogo.png external_url: "https://galaxyproject.eu/event/2019-11-07-GalaxyWS_FR/" contact: "Freiburg Galaxy Team" gtn: true diff --git a/content/events/2020-03-c3dis/index.md b/content/events/2020-03-c3dis/index.md index e38e3b2a0c..7fffc51a8e 100644 --- a/content/events/2020-03-c3dis/index.md +++ b/content/events/2020-03-c3dis/index.md @@ -6,7 +6,7 @@ tease: "Galaxy Australia" continent: AU location: "C3DIS 2020, Melbourne, Victoria, Australia" location_url: "http://www.c3dis.com/" -image: /src/images/logos/c3dis-logo-2020.png +image: /images/logos/c3dis-logo-2020.png external_url: contact: "Gareth Price" gtn: true diff --git a/content/events/2020-03-denbi-machine-learning/index.md b/content/events/2020-03-denbi-machine-learning/index.md index 2d4c939372..887d54d491 100644 --- a/content/events/2020-03-denbi-machine-learning/index.md +++ b/content/events/2020-03-denbi-machine-learning/index.md @@ -6,7 +6,7 @@ tease: "in Freiburg" continent: EU location: "University of Freiburg, Freiburg, Germany" location_url: -image: /src/images/logos/deNBILogo.png +image: /images/logos/deNBILogo.png external_url: "https://usegalaxy-eu.github.io/event/2020-01-21-MachineLearning/plain.html" contact: "Alireza Khanteymoori, Anup Kumar" gtn: true diff --git a/content/events/2020-03-denbi-single-cell/index.md b/content/events/2020-03-denbi-single-cell/index.md index 2c3e002dfc..975ef308c4 100644 --- a/content/events/2020-03-denbi-single-cell/index.md +++ b/content/events/2020-03-denbi-single-cell/index.md @@ -6,7 +6,7 @@ tease: "in Freiburg" continent: EU location: "University of Freiburg, Freiburg, Germany" location_url: -image: /src/images/logos/deNBILogo.png +image: /images/logos/deNBILogo.png external_url: "https://usegalaxy-eu.github.io/event/2020-01-20-GalaxyWS_scrna_FR/plain.html" contact: "Anika Erxleben, Mehmet Tekman" gtn: true diff --git a/content/events/2020-05-migale-rnaseq/index.md b/content/events/2020-05-migale-rnaseq/index.md index 6d51e21ae7..bf9928d4e8 100644 --- a/content/events/2020-05-migale-rnaseq/index.md +++ b/content/events/2020-05-migale-rnaseq/index.md @@ -5,7 +5,7 @@ days: 3 tease: 'Part of Cycle "Bioinformatique par la pratique" 2020' continent: EU location: 'Cycle "Bioinformatique par la pratique" 2020, INRA, Jouy-en-Josas, France' -image: /src/images/logos/MIGALELogo.png +image: /images/logos/MIGALELogo.png location_url: "https://migale.inra.fr/trainings" external_url: "https://genome.jouy.inra.fr/db/tmp/module23.pdf" gtn: true diff --git a/content/events/2020-06-sib-introduction/index.md b/content/events/2020-06-sib-introduction/index.md index c3b90452ae..4cb8de3519 100644 --- a/content/events/2020-06-sib-introduction/index.md +++ b/content/events/2020-06-sib-introduction/index.md @@ -9,5 +9,5 @@ location_url: "https://www.sib.swiss/training" external_url: "https://www.sib.swiss/training/course/2020-06-galaxy" gtn: true contact: "Lucille Delisle, Hans-Rudolf Hotz" -image: /src/images/logos/SIB_Logo_trans_background.png +image: /images/logos/SIB_Logo_trans_background.png --- diff --git a/content/events/2020-07-migale-metabarcoding/index.md b/content/events/2020-07-migale-metabarcoding/index.md index b473c91d68..1e5571fc36 100644 --- a/content/events/2020-07-migale-metabarcoding/index.md +++ b/content/events/2020-07-migale-metabarcoding/index.md @@ -5,7 +5,7 @@ days: 4 tease: 'Part of Cycle "Bioinformatique par la pratique" 2020' continent: EU location: 'Cycle "Bioinformatique par la pratique" 2020, INRA, Jouy-en-Josas, France' -image: /src/images/logos/MIGALELogo.png +image: /images/logos/MIGALELogo.png location_url: "https://migale.inra.fr/trainings" external_url: "https://genome.jouy.inra.fr/db/tmp/module20.pdf" gtn: true diff --git a/content/events/2020-09-biocompute-isb/index.md b/content/events/2020-09-biocompute-isb/index.md index c87565deb5..227d403008 100644 --- a/content/events/2020-09-biocompute-isb/index.md +++ b/content/events/2020-09-biocompute-isb/index.md @@ -5,7 +5,7 @@ days: 1 tease: "" continent: GL location: "ISB Workshop, Online, Global" -image: "/src/use/biocompute-object/biocompute-objects-logo.png" +image: "/use/biocompute-object/biocompute-objects-logo.png" location_url: "https://www.biocuration.org/biocuration-2020-online-workshops/" external_url: "" gtn: true diff --git a/content/events/2020-09-goblet/index.md b/content/events/2020-09-goblet/index.md index 0a80a909bc..8e900e8b95 100644 --- a/content/events/2020-09-goblet/index.md +++ b/content/events/2020-09-goblet/index.md @@ -8,7 +8,7 @@ location: "Online, Sweden" location_url: "https://mygoblet.org/goblet-agm2020/" external_url: "" contact: "Fotis Psomopoulos, Gareth Price" -image: "/src/images/logos/GobletLogo.png" +image: "/images/logos/GobletLogo.png" gtn: false --- diff --git a/content/events/2020-09-migale-bacterial/index.md b/content/events/2020-09-migale-bacterial/index.md index c35c8abda2..9e68da9fad 100644 --- a/content/events/2020-09-migale-bacterial/index.md +++ b/content/events/2020-09-migale-bacterial/index.md @@ -5,7 +5,7 @@ days: 1 tease: 'Part of Cycle "Bioinformatique par la pratique" 2020' continent: EU location: 'Cycle "Bioinformatique par la pratique" 2020, INRA, Jouy-en-Josas, France' -image: /src/images/logos/MIGALELogo.png +image: /images/logos/MIGALELogo.png location_url: "https://migale.inra.fr/trainings" external_url: "https://migale.inrae.fr/sites/default/files/formation/2020/module9.pdf" gtn: true diff --git a/content/events/2020-09-migale-comparison/index.md b/content/events/2020-09-migale-comparison/index.md index cc166531bd..12284bcf4f 100644 --- a/content/events/2020-09-migale-comparison/index.md +++ b/content/events/2020-09-migale-comparison/index.md @@ -5,7 +5,7 @@ days: 1 tease: 'Part of Cycle "Bioinformatique par la pratique" 2020' continent: EU location: 'Cycle "Bioinformatique par la pratique" 2020, INRA, Jouy-en-Josas, France' -image: /src/images/logos/MIGALELogo.png +image: /images/logos/MIGALELogo.png location_url: "https://migale.inra.fr/trainings" external_url: "https://migale.inrae.fr/sites/default/files/formation/2020/module9bis.pdf" gtn: true diff --git a/content/events/2020-09-migale-frogs/index.md b/content/events/2020-09-migale-frogs/index.md index 12b482e0de..45f6b4ffe3 100644 --- a/content/events/2020-09-migale-frogs/index.md +++ b/content/events/2020-09-migale-frogs/index.md @@ -5,7 +5,7 @@ days: 4 tease: 'Part of Cycle "Bioinformatique par la pratique" 2020' continent: EU location: 'Cycle "Bioinformatique par la pratique" 2020, INRA, Jouy-en-Josas, France' -image: /src/images/logos/MIGALELogo.png +image: /images/logos/MIGALELogo.png location_url: "https://migale.inra.fr/trainings" external_url: "https://migale.inrae.fr/sites/default/files/formation/2020/module20-sept.pdf" gtn: true diff --git a/content/events/2020-09-niaid/index.md b/content/events/2020-09-niaid/index.md index dbe2280dbc..a8b30628e1 100644 --- a/content/events/2020-09-niaid/index.md +++ b/content/events/2020-09-niaid/index.md @@ -5,7 +5,7 @@ days: 1 tease: '' continent: NA location: 'NIAID, Online, United States' -image: /src/images/logos/niaid-logo.png +image: /images/logos/niaid-logo.png location_url: "" external_url: "" gtn: false diff --git a/content/events/2020-10-migale-intro/index.md b/content/events/2020-10-migale-intro/index.md index d9acfdbaec..1febbe123d 100644 --- a/content/events/2020-10-migale-intro/index.md +++ b/content/events/2020-10-migale-intro/index.md @@ -5,7 +5,7 @@ days: 1 tease: 'Part of Cycle "Bioinformatique par la pratique" 2020' continent: EU location: 'Cycle "Bioinformatique par la pratique" 2020, INRA, Jouy-en-Josas, France' -image: /src/images/logos/MIGALELogo.png +image: /images/logos/MIGALELogo.png location_url: "https://migale.inra.fr/trainings" external_url: "https://migale.inrae.fr/sites/default/files/formation/2020/module17.pdf" gtn: true diff --git a/content/events/2020-10-migale-ngs/index.md b/content/events/2020-10-migale-ngs/index.md index 70a247feeb..4504648230 100644 --- a/content/events/2020-10-migale-ngs/index.md +++ b/content/events/2020-10-migale-ngs/index.md @@ -5,7 +5,7 @@ days: 1 tease: 'Part of Cycle "Bioinformatique par la pratique" 2020' continent: EU location: 'Cycle "Bioinformatique par la pratique" 2020, INRA, Jouy-en-Josas, France' -image: /src/images/logos/MIGALELogo.png +image: /images/logos/MIGALELogo.png location_url: "https://migale.inra.fr/trainings" external_url: "https://migale.inrae.fr/sites/default/files/formation/2020/module8bis.pdf" gtn: true diff --git a/content/events/2020-abrf/index.md b/content/events/2020-abrf/index.md index 511397b84b..d8572dd219 100644 --- a/content/events/2020-abrf/index.md +++ b/content/events/2020-abrf/index.md @@ -7,7 +7,7 @@ continent: NA location: "ABRF 2020, Palm Springs, California, United States" location_url: http://conf.abrf.org/ external_url: -image: "/src/images/logos/abrf-logo-color-text.png" +image: "/images/logos/abrf-logo-color-text.png" gtn: true contact: "Pratik Jagtap, Tim Griffin, Dave Clements, Saskia Hiltemann, Subina Mehta, Mehmet Tekman" --- diff --git a/content/events/2021-01-admin-training/index.md b/content/events/2021-01-admin-training/index.md index 4cc441a486..88e2fb4875 100644 --- a/content/events/2021-01-admin-training/index.md +++ b/content/events/2021-01-admin-training/index.md @@ -9,7 +9,7 @@ location_url: "" external_url: gtn: true contact: Instructors -image: "/src/images/galaxy-logos/admin-training-logo.jpg" +image: "/images/galaxy-logos/admin-training-logo.jpg" --- **The next [Galaxy Admin Training](https://github.com/galaxyproject/admin-training) will be offered online and asynchronously January 25-29.** diff --git a/content/events/2021-02-migale-intro/index.md b/content/events/2021-02-migale-intro/index.md index 718646f75a..8a453cf025 100644 --- a/content/events/2021-02-migale-intro/index.md +++ b/content/events/2021-02-migale-intro/index.md @@ -5,7 +5,7 @@ days: 1 tease: 'Full. Part of Cycle "Bioinformatique par la pratique" 2021' continent: EU location: 'Cycle "Bioinformatique par la pratique" 2021, INRAE, Jouy-en-Josas, France' -image: /src/images/logos/MIGALELogo.png +image: /images/logos/MIGALELogo.png location_url: "https://migale.inra.fr/trainings" external_url: "https://migale.inrae.fr/sites/default/files/formation/2021/module17.pdf" gtn: true diff --git a/content/events/2021-02-migale-ngs/index.md b/content/events/2021-02-migale-ngs/index.md index b99fb13b33..e0156cd2d6 100644 --- a/content/events/2021-02-migale-ngs/index.md +++ b/content/events/2021-02-migale-ngs/index.md @@ -5,7 +5,7 @@ days: 1 tease: 'Part of Cycle "Bioinformatique par la pratique" 2021' continent: EU location: 'Cycle "Bioinformatique par la pratique" 2021, Online, INRAE, Jouy-en-Josas, France' -image: /src/images/logos/MIGALELogo.png +image: /images/logos/MIGALELogo.png location_url: "https://migale.inra.fr/trainings" external_url: "https://migale.inrae.fr/sites/default/files/formation/2021/module8bis.pdf" gtn: true diff --git a/content/events/2021-03-metabolomics/index.md b/content/events/2021-03-metabolomics/index.md index cd1b899b0d..159f354891 100644 --- a/content/events/2021-03-metabolomics/index.md +++ b/content/events/2021-03-metabolomics/index.md @@ -11,5 +11,5 @@ gtn: false contact: "Mélanie Petera, Melanie Föll" tags: [] links: -image: "/src/images/communities/metabolomics.png" +image: "/images/communities/metabolomics.png" --- diff --git a/content/events/2021-04-gr4-education/index.md b/content/events/2021-04-gr4-education/index.md index 0b3210a537..7d139b39e0 100644 --- a/content/events/2021-04-gr4-education/index.md +++ b/content/events/2021-04-gr4-education/index.md @@ -5,7 +5,7 @@ days: 1 tease: "Part of the Galaxy Resources Webinar Series" continent: GL location: "Galaxy Resources Webinar Series, Online, Global" -image: "/src/events/webinars/gr4-webinars-400.png" +image: "/events/webinars/gr4-webinars-400.png" location_url: "/events/webinars/" external_url: contact: "Saskia Hiltemann, Subina Mehta, Christine Cucinotta, Miaomiao Zhou, Bérénice Batut" diff --git a/content/events/2021-04-migale-metabarcoding/index.md b/content/events/2021-04-migale-metabarcoding/index.md index 6c42c58fcf..a11a7cd889 100644 --- a/content/events/2021-04-migale-metabarcoding/index.md +++ b/content/events/2021-04-migale-metabarcoding/index.md @@ -5,7 +5,7 @@ days: 4 tease: 'Full. Part of Cycle "Bioinformatique par la pratique" 2021' continent: EU location: 'Cycle "Bioinformatique par la pratique" 2021, INRAE, Jouy-en-Josas, France' -image: /src/images/logos/MIGALELogo.png +image: /images/logos/MIGALELogo.png location_url: "https://migale.inra.fr/trainings" external_url: "https://migale.inrae.fr/sites/default/files/formation/2021/module20.pdf" gtn: true diff --git a/content/events/2021-05-bog/index.md b/content/events/2021-05-bog/index.md index 262eaf28a6..e40ce9aae3 100644 --- a/content/events/2021-05-bog/index.md +++ b/content/events/2021-05-bog/index.md @@ -9,7 +9,7 @@ location_url: "https://meetings.cshl.edu/meetings.aspx?meet=GENOME&year=21" external_url: "" gtn: false contact: "Anton Nekrutenko, Michael Schatz" -image: "/src/images/logos/CSHLLogo.jpg" +image: "/images/logos/CSHLLogo.jpg" --- Two Galaxy PIs will present large-scale Galaxy efforts during poster sessions at the [2021 Biology of Genomes](https://meetings.cshl.edu/abstracts.aspx?meet=GENOME&year=21) conference: diff --git a/content/events/2021-05-galaxynl/index.md b/content/events/2021-05-galaxynl/index.md index ea0f2f3eb4..1bb1a115f1 100644 --- a/content/events/2021-05-galaxynl/index.md +++ b/content/events/2021-05-galaxynl/index.md @@ -9,5 +9,5 @@ location_url: "" external_url: "https://docs.google.com/document/d/1irLt2gtm-iNdgDZqybUpj7g39zkf5qaDkGW4-wW31YQ/edit" gtn: false contact: "Saskia Hiltemann" -image: "/src/images/logos/galaxy-nl-big.png" +image: "/images/logos/galaxy-nl-big.png" --- diff --git a/content/events/2021-05-metabolomics/index.md b/content/events/2021-05-metabolomics/index.md index 76229efc2b..eb76488fba 100644 --- a/content/events/2021-05-metabolomics/index.md +++ b/content/events/2021-05-metabolomics/index.md @@ -11,7 +11,7 @@ gtn: false contact: "Melanie Föll, Amrita Cheema" tags: [] links: -image: "/src/images/communities/metabolomics.png" +image: "/images/communities/metabolomics.png" --- **When: 14:00 CET** diff --git a/content/events/2021-05-migale-bacterial/index.md b/content/events/2021-05-migale-bacterial/index.md index a6e4bfbf94..7facdc36d4 100644 --- a/content/events/2021-05-migale-bacterial/index.md +++ b/content/events/2021-05-migale-bacterial/index.md @@ -5,7 +5,7 @@ days: 1 tease: 'Full. Part of Cycle "Bioinformatique par la pratique" 2021' continent: EU location: 'Cycle "Bioinformatique par la pratique" 2021, INRAE, Jouy-en-Josas, France' -image: /src/images/logos/MIGALELogo.png +image: /images/logos/MIGALELogo.png location_url: "https://migale.inra.fr/trainings" external_url: "https://migale.inrae.fr/sites/default/files/formation/2021/module9.pdf" gtn: true diff --git a/content/events/2021-05-migale-comparison/index.md b/content/events/2021-05-migale-comparison/index.md index a0d6447912..490592d6ab 100644 --- a/content/events/2021-05-migale-comparison/index.md +++ b/content/events/2021-05-migale-comparison/index.md @@ -5,7 +5,7 @@ days: 1 tease: 'Full. Part of Cycle "Bioinformatique par la pratique" 2021' continent: EU location: 'Cycle "Bioinformatique par la pratique" 2021, INRAE, Jouy-en-Josas, France' -image: /src/images/logos/MIGALELogo.png +image: /images/logos/MIGALELogo.png location_url: "https://migale.inra.fr/trainings" external_url: "https://migale.inrae.fr/sites/default/files/formation/2021/module9bis.pdf" gtn: true diff --git a/content/events/2021-06-gat-cofest/index.md b/content/events/2021-06-gat-cofest/index.md index c3fdab1844..42e3e9d2a1 100644 --- a/content/events/2021-06-gat-cofest/index.md +++ b/content/events/2021-06-gat-cofest/index.md @@ -11,7 +11,7 @@ gtn: false contact: "Nate Coraor, Helena Rasche" tags: [ "cofest" ] links: -image: "/src/images/galaxy-logos/admin-training-logo.jpg" +image: "/images/galaxy-logos/admin-training-logo.jpg" --- As the [2021 Galaxy Community Conference (GCC2021)](https://www.vibconferences.be/events/gcc2021-virtual-edition) draws near ([training](https://galaxyproject.org/events/gcc2021/training/) starts June 28) the instructors behind the [Galaxy Admin Track](https://galaxyproject.org/events/gcc2021/training/admin-track) (and [Galaxy Admin Training events](/events/2021-01-admin-training/)) would like to gather to address [some lingering issues](https://github.com/galaxyproject/training-material/issues/2274) before GCC. diff --git a/content/events/2021-09-migale-comparison/index.md b/content/events/2021-09-migale-comparison/index.md index d211952c4b..f67c6b34a2 100644 --- a/content/events/2021-09-migale-comparison/index.md +++ b/content/events/2021-09-migale-comparison/index.md @@ -5,7 +5,7 @@ days: 1 tease: 'Part of Cycle "Bioinformatique par la pratique" 2021' continent: EU location: 'Cycle "Bioinformatique par la pratique" 2021, INRAE, Jouy-en-Josas, France' -image: /src/images/logos/MIGALELogo.png +image: /images/logos/MIGALELogo.png location_url: "https://migale.inra.fr/trainings" external_url: "https://migale.inrae.fr/sites/default/files/formation/2021/module9bis-sept.pdf" gtn: true diff --git a/content/events/2021-09-migale-metabarcoding/index.md b/content/events/2021-09-migale-metabarcoding/index.md index 8af3b4dd25..49f1a36a80 100644 --- a/content/events/2021-09-migale-metabarcoding/index.md +++ b/content/events/2021-09-migale-metabarcoding/index.md @@ -5,7 +5,7 @@ days: 4 tease: 'Part of Cycle "Bioinformatique par la pratique" 2021' continent: EU location: 'Cycle "Bioinformatique par la pratique" 2021, INRAE, Jouy-en-Josas, France' -image: /src/images/logos/MIGALELogo.png +image: /images/logos/MIGALELogo.png location_url: "https://migale.inra.fr/trainings" external_url: "https://migale.inrae.fr/sites/default/files/formation/2021/module20-sept.pdf" gtn: true diff --git a/content/events/admin-training2016/header.md b/content/events/admin-training2016/header.md index 9d5a31165b..181e7b6e77 100644 --- a/content/events/admin-training2016/header.md +++ b/content/events/admin-training2016/header.md @@ -1,6 +1,6 @@ - + diff --git a/content/events/archive/wayback/index.md b/content/events/archive/wayback/index.md index a4418715cc..3c075d23f9 100644 --- a/content/events/archive/wayback/index.md +++ b/content/events/archive/wayback/index.md @@ -83,7 +83,7 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e - + @@ -110,8 +110,8 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e - - + + @@ -120,35 +120,35 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e - + - - + + - - + + - + - + @@ -156,77 +156,77 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e - - + + - - + + - + - - - + + + - + - - + + - - + + - + - + - - + + - + @@ -236,98 +236,98 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e - + - + - + - + - + - + - - + + - - + + - + - + - + - + - + - + @@ -337,71 +337,71 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e - + - + - - + + - - + + - + - - + + - + - + - + - - + + @@ -410,43 +410,43 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e - + - + - + - + - - + + - - + + @@ -455,77 +455,77 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e - - + + - - + + - + - + - + - + - + - + - + - + - + @@ -535,84 +535,84 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e - + - - + + - + - - + + - + - + - - + + - - + + - - + + - - + + - - + + - + @@ -622,99 +622,99 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e - + - + - + - + - + - - + + - + - - + + - - + + - + - - + + - + - - + + - - + + @@ -723,70 +723,70 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e - + - + - + - + - + - + - + - - + + - + - + @@ -804,43 +804,43 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e - + - + - + - + - + - - + + @@ -850,50 +850,50 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e - - + + - - + + - + - + - + - + - - + + @@ -903,50 +903,50 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e - - + + - + - + - + - + - - + + - - + +
Galaxy Project Admin Training Galaxy Project Admin Training
Galaxy Admin Training
November 7-11, 2016
University of Utah
Salt Lake City, Utah
United States

Register by October 16
Lodging released October 6
December 15-16 Galaxy RNA-sequencing data analysis workshop Europe Freiburg, Germany Training offered by GTN Member Freiburg Galaxy Team Training offered by GTN Member Freiburg Galaxy Team
November 28 - December 2 Traitement des donnéesmétabolomiques sous Galaxy
Les pré-inscriptions sont ouvertes jusqu'au 15 juillet 2016
 Europe Station Biologique, Roscoff, France
Training offered by GTN Member
Contact 		Europe Station Biologique, Roscoff, France
Training offered by GTN Member
Contact
November 28-30 Analyse avancée de séquences Europe Bordeaux, France Europe Bordeaux, France Macha Nikolski
November 29 Genome Assembly and Annotation Europe University of Aberdeen, Scotland, United Kingdom
Training offered by GTN Member
Sophie Shaw 		Europe University of Aberdeen, Scotland, United Kingdom
Training offered by GTN Member
Sophie Shaw
November 20-25 Ecole Bioinformatique AVIESAN Europe Station Biologique, Roscoff, France
Training offered by GTN Member
Email 		Europe Station Biologique, Roscoff, France
Training offered by GTN Member
Email
November 21-23 Annotation of transposable elements Europe URGI, INRA Versailles, France Europe URGI, INRA Versailles, France Contact
November 21 Pasteur_galaxy: An open and sustainable Galaxy instance for NGS data analysis SouthAmerica ISCB-Latin America, Buenos Aires, Argentina SouthAmerica ISCB-Latin America, Buenos Aires, Argentina Oussama Souiai
November 8-20 Advanced Sequencing Technologies & Applications
Application deadline is July 15
 North America Cold Spring Harbor Laboratory, New York, United States
Training offered by GTN Member
Jeremy Goecks 		North America Cold Spring Harbor Laboratory, New York, United States
Training offered by GTN Member
Jeremy Goecks
November 16 Quality Control of Next Generation Sequencing Reads Europe University of Aberdeen, Scotland, United Kingdom
Training offered by GTN Member
Sophie Shaw 		Europe University of Aberdeen, Scotland, United Kingdom
Training offered by GTN Member
Sophie Shaw
November 16 Large-scale analytical workflows on the cloud using Galaxy and Globus Around the world Online, Scotland, United Kingdom Around the world Online, Scotland, United Kingdom Ravi Madduri
November 16 Introduction to Galaxy Workshop North America University of Utah, Salt Lake City, Utah, United States
Training offered by GTN Member
Dave Clements 		Introduction to Galaxy Workshop North America University of Utah, Salt Lake City, Utah, United States
Training offered by GTN Member
Dave Clements
November 15-16 Analyse de données RNA-seq sous l’environnement Galaxy Europe PRABI, Lyon, France Europe PRABI, Lyon, France Contact
November 9-11 Galaxy Admin Training: Advanced North America Salt Lake City, Utah, United States
Training offered by GTN Member
Instructors 		North America Salt Lake City, Utah, United States
Training offered by GTN Member
Instructors
November 11 Introduction to the GVL and Galaxy Australia University of Melbourne, Melbourne, Victoria, Australia
Training offered by GTN Member
VLSCI 		Australia University of Melbourne, Melbourne, Victoria, Australia
Training offered by GTN Member
VLSCI
November 7-9 NGS & Cancer : Analyses ChIP-Seq
Workshop is full
 Europe Paris, France Europe Paris, France Cancéropôle Île-de-France
November 7-9 Tool deployment and sustainability in bioinformatics – fixed! Europe Bioinformatics for Human Health and Disease, Heidelberg, Germany Europe Bioinformatics for Human Health and Disease, Heidelberg, Germany Bérénice Batut
November 7-8 Galaxy Admin Training: Introduction North America Salt Lake City, Utah, United States
Training offered by GTN Member
Instructors 		North America Salt Lake City, Utah, United States
Training offered by GTN Member
Instructors
November 2-3 Bioconda Contribution Fest Around the World Online Around the World Online Björn Grüning
October 25-27 The Galaxy tool lifecycle supporting reproducibility in scientific research Europe NETTAB 2016 / EMBNet Joint Meeting on Reproducibility in Bioinformatics, Rome, Italy Europe NETTAB 2016 / EMBNet Joint Meeting on Reproducibility in Bioinformatics, Rome, Italy Dannon Baker, Björn Grüning
October 24 Deployment of bioinformatics tools and services through Docker Europe ELIXIR Hackathon @ NETTAB 2016, Rome, Italy Europe ELIXIR Hackathon @ NETTAB 2016, Rome, Italy Paolo Romano, Jon Ison
October 20-21 BioExcel: Workflow Training for Computational Biomolecular Research Europe Barcelona Supercomputing Center, Barcelona, Spain Europe Barcelona Supercomputing Center, Barcelona, Spain Antonio Miguel Espinosa Morales
October 21 (second German) Galaxy Developers Day Europe 2016 Swiss-German Galaxy Days in Freiburg, Germany Europe 2016 Swiss-German Galaxy Days in Freiburg, Germany Hans-Rudolf Hotz and Bjoern Gruening
October 20 Genome Program Joint Workshop Asia Kunsan National University, Gunsan, South Korea Asia Kunsan National University, Gunsan, South Korea Anton Nekrutenko
October 20 (third Swiss) Galaxy Workshop Europe 2016 Swiss-German Galaxy Days in Freiburg, Germany Europe 2016 Swiss-German Galaxy Days in Freiburg, Germany Hans-Rudolf Hotz and Bjoern Gruening
October 18-20 Galaxy4Bioinformatics Europe Lyon, France
Training offered by GTN Member
Contacts 		Europe Lyon, France
Training offered by GTN Member
Contacts
October 10-13 Metagenomic: amplicon analysis
Registration closes 4 October
 Europe INRA Auzeville, Auzeville, France
Training offered by GTN Member
Sarah Maman 		Europe INRA Auzeville, Auzeville, France
Training offered by GTN Member
Sarah Maman
October 13 Galaxy Workshop
Workshop is full
 Europe Copenhagen, Denmark Europe Copenhagen, Denmark Jose Maria (Txema) Gonzalez Izarzugaza
October 10 Omics Data Services Platform: Supporting bacterial pathogen multi omics analysis Australia International Workshop on Science Gateways, Melbourne, Australia Australia International Workshop on Science Gateways, Melbourne, Australia Andrew Lonie
October 10 Microbial Genomics Virtual Laboratory: Supporting bacterial pathogen multi omics analysis Australia International Workshop on Science Gateways, Melbourne, Australia Australia International Workshop on Science Gateways, Melbourne, Australia Simon Gladman
October 6-7 Galaxy Training Contribution Fest Around the World Online Around the World Online Björn Grüning
October 5 Galaxy-qld Meetup Australia UQ St Lucia campus, Queensland, Australia Australia UQ St Lucia campus, Queensland, Australia Igor Makunin Slides
September 29 - October 1 GalaxyによるNGSデータ解析 (Galaxy NGS Data Analysis BoF) Asia 第5回生命医薬情報学連合大会 (IIBMP 2016), Tokyo, Japan Asia 第5回生命医薬情報学連合大会 (IIBMP 2016), Tokyo, Japan Ryota Yamanaka, Tazra Ohta Slides
September 28 BioMAJ2Galaxy: automatic update of reference data in Galaxy using BioMAJ Around the World ELIXIR Webinar Around the World ELIXIR Webinar Olivier Sallou Slides & video
September 27-28 Galaxy-P Conda hackathon Around the World Online Around the World Online Pratik Jagtap
September 26-28 NGS Course: RNA-seq data analysis Europe Leiden University Medical Center, The Netherlands
Training offered by GTN Member
Peter-Bram ‘t Hoen, Jan Oosting, Celia van Gelder 		Europe Leiden University Medical Center, The Netherlands
Training offered by GTN Member
Peter-Bram ‘t Hoen, Jan Oosting, Celia van Gelder
September 19-23 High Throughput Sequencing (HTS) Data Analyses for Scientists
This workshop is full
 Europe Freiburg, Germany
Training offered by GTN Member
Contact 		Europe Freiburg, Germany
Training offered by GTN Member
Contact
September 19-22 Streamlined analysis of duplex sequencing data with Du Novo Europe Genome Informatics 2016, Hinxton, United Kingdom Europe Genome Informatics 2016, Hinxton, United Kingdom Nick Stoler
September 19-20 Exome analysis using Galaxy Europe Milano, Italy
Training offered by GTN Member
Paolo Uva, Gianmauro Cuccuru 		Europe Milano, Italy
Training offered by GTN Member
Paolo Uva, Gianmauro Cuccuru
September 12-16 The Workflow4Metabolomics (W4M) online infrastructure for omics analysis with Galaxy Europe Metabolomics Sardinian Scientific School: How to bridge metabolomics and genomics, Pula, Italy Europe Metabolomics Sardinian Scientific School: How to bridge metabolomics and genomics, Pula, Italy E Thévenot
September 12-16 Summer School 2016 in Metagenomics Europe Institut Pasteur, Paris, France Europe Institut Pasteur, Paris, France Contacts
September 3-7 European Conference on Computational Biology (ECCB 2016) Europe The Hague, Netherlands Europe The Hague, Netherlands See presenters Presentations
August 29 - September 2 Using Galaxy for Analysis of RNA-Seq, Exome-Seq, and Variants North America Davis, California, United States
Training offered by GTN Member
UC Davis Bioinformatics Training Program 		North America Davis, California, United States
Training offered by GTN Member
UC Davis Bioinformatics Training Program
August 22-26 A Framework for Accessible Cluster-enabled Epistatic Analysis Europe Euro-PAr 2016, Grenoble, France Europe Euro-PAr 2016, Grenoble, France Alex Upton Paper
August 18 GalaxyAdmins Web Meetup Around the World Online Around the World Online Nick Hazekamp, Hans-Rudolf Hotz, Dave Clements Slides
August 17 Galaxy Workshop Australia St Lucia campus, University of Queensland, Australia Australia St Lucia campus, University of Queensland, Australia Igor Makunin
August 12 Introduction to Galaxy Workshop Europe University of Glasgow, Glasgow, United Kingdom Europe University of Glasgow, Glasgow, United Kingdom David Meltzer
August 9-10 Introduction to Galaxy Workflows North America Workflows Workshop, Distributed
Training offered by GTN Member
Dave Clements 		North America Workflows Workshop, Distributed
Training offered by GTN Member
Dave Clements 		Slides
August 1-4 Integrating Ontological and Genomic Analysis with Galaxy Workshop North America ICBO 2016, Corvallis, Oregon, United States
Training offered by GTN Member
Dave Clements 		North America ICBO 2016, Corvallis, Oregon, United States
Training offered by GTN Member
Dave Clements 		Tutorial, Slides
July 21 Introduction to Galaxy North America Cornell University, Ithaca, New York, United States
Training offered by GTN Member
Dave Clements 		North America Cornell University, Ithaca, New York, United States
Training offered by GTN Member
Dave Clements 		Slides
July 19-20 Introduction to Galaxy North America University of Rochester, Rochester, New York, United States
Training offered by GTN Member
Dave Clements 		North America University of Rochester, Rochester, New York, United States
Training offered by GTN Member
Dave Clements 		Slides
July 19 Jetstream - performance, early experience, and early results North America XSEDE16, Miami, Florida, United States North America XSEDE16, Miami, Florida, United States James Taylor
July 19 CloudBridge: a Simple Cross-Cloud Python Library North America XSEDE16, Miami, Florida, United States North America XSEDE16, Miami, Florida, United States Enis Afgan
July 15 Introduction to Galaxy Workshop
This workshop is full
 Europe University of Glasgow, Glasgow, United Kingdom Europe University of Glasgow, Glasgow, United Kingdom David Meltzer
July 13-17 An Introduction to Using Galaxy for Genetic Data Analysis North America The Allied Genetics Conference 2016 (TAGC), Orlando, Florida, United States North America The Allied Genetics Conference 2016 (TAGC), Orlando, Florida, United States Dave Clements Slides, Tutorial
July 8-12 ISMB 2016 North America Orlando, Florida, United States North America Orlando, Florida, United States See presenters Slides, Posters, Video
July 8-9 BOSC 2016 North America ISMB 2016, Orlando, Florida, United States North America ISMB 2016, Orlando, Florida, United States See presenters Slides, Posters, Video
July 4-8 An introduction to Galaxy with the NeCTAR Genomics Virtual Laboratory Workshop Australia 2016 Winter School in Mathematical & Computational Biology, University of Queensland, Brisbane, Australia Australia 2016 Winter School in Mathematical & Computational Biology, University of Queensland, Brisbane, Australia Igor Makunin, Derek Benson Slides
July 6-7 BOSC Codefest 2016 North America Orlando, Florida, United States North America Orlando, Florida, United States Brad Chapman
July 3-7 Poster: Detection of ultra-rare mitochondrial variants Australia SMBE 2016, Gold Coast, Queensland, Australia Australia SMBE 2016, Gold Coast, Queensland, Australia Anton Nekrutenko
June 30 - July 1 GMOD Meeting North America Indiana University, Bloomington, Indiana, United States North America Indiana University, Bloomington, Indiana, United States Scott Cain Slides
June 25-29 2016 Galaxy Community Conference (GCC2016) North America Indiana University, Bloomington, Indiana, United States
Training offered by GTN Member
Organizers 		North America Indiana University, Bloomington, Indiana, United States
Training offered by GTN Member
Organizers
June 20 Introduction to Galaxy Workshop Europe University of Glasgow, Glasgow, United Kingdom Europe University of Glasgow, Glasgow, United Kingdom David Meltzer
June 13-17 Using Galaxy for Analysis of RNA-Seq and ChIP-Seq Data North America Davis, California, United States
Training offered by GTN Member
UC Davis Bioinformatics Training Program 		North America Davis, California, United States
Training offered by GTN Member
UC Davis Bioinformatics Training Program
June 16 Galaxy in Production at the University of Minnesota Around the World GalaxyAdmins Web Meetup, Online Around the World GalaxyAdmins Web Meetup, Online Evan Bollig, JJ Johnson, Helena Rasche, Hans-Rudolf Hotz, Dave Clements Slides
June 15 BioMAJ2Galaxy: automatic update of reference data in Galaxy using BioMAJ Around the World ELIXIR Webinar, Online Around the World ELIXIR Webinar, Online Olivier Sallou, Anthony Bretaudeau
June 14 RNA-Seq Differential Gene Expression Analysis using the GVL and Galaxy Australia Melbourne, Australia
Training offered by GTN Member
VLSCI 		Australia Melbourne, Australia
Training offered by GTN Member
VLSCI
June 9-10 Informatics on High-throughput Sequencing Data North America Montreal, Quebec, Canada
Training offered by GTN Member
Francis Ouellette 		North America Montreal, Quebec, Canada
Training offered by GTN Member
Francis Ouellette
June 5-9 64th ASMS Conference on Mass Spectrometry and Allied Topics North America San Antonio, Texas, United States
Training offered by GTN Member
Presenters 		North America San Antonio, Texas, United States
Training offered by GTN Member
Presenters
June 8 Variant Calling with Galaxy and the GVL for beginners Australia Melbourne, Australia
Training offered by GTN Member
VLSCI 		Australia Melbourne, Australia
Training offered by GTN Member
VLSCI
June 7 Introduction to the GVL and Galaxy Australia Melbourne, Australia
Training offered by GTN Member
VLSCI 		Australia Melbourne, Australia
Training offered by GTN Member
VLSCI
June 6 Introduction to cloud computing (and its application in bioinformatics) Europe Zagreb, Croatia Europe Zagreb, Croatia Enis Afgan
May 31 Analyse primaire de données issues de séquenceurs nouvelle génération sous Galaxy Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France Formation Migale
May 30 Initiation à l’utilisation de Galaxy Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France Formation Migale
May 27 Variant Detection using Galaxy Australia Children’s Medical Research Institute, Westmead, NSW, Australia Australia Children’s Medical Research Institute, Westmead, NSW, Australia Katherine Champ
May 26 RNA-Seq Analysis Using Galaxy Australia Children’s Medical Research Institute, Westmead, NSW, Australia Australia Children’s Medical Research Institute, Westmead, NSW, Australia Katherine Champ
May 23-24 Analyse statistique de données RNA-Seq sous Galaxy -Recherche des régions d'intérêt différentiellement exprimées Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France Formation Migale
May 19-20 Galaxy : RNAseq alignment and transcripts assemblies Europe Part of Cycle d'aprentissage sous Galaxy, INRA, Auzeville, France
Training offered by GTN Member
Celine Noirot, Cédric Cabau 		Europe Part of Cycle d'aprentissage sous Galaxy, INRA, Auzeville, France
Training offered by GTN Member
Celine Noirot, Cédric Cabau
May 18-20 ELIXIR Technical Hackathon: Tools, Workflows and Workbenches
Full
 Europe Institut Pasteur, Paris, France Europe Institut Pasteur, Paris, France Organisers
May 17 Galaxy First Step Europe Part of Cycle d'aprentissage sous Galaxy, INRA, Auzeville, France
Training offered by GTN Member
Sarah Maman 		Europe Part of Cycle d'aprentissage sous Galaxy, INRA, Auzeville, France
Training offered by GTN Member
Sarah Maman
May 18-19 Galaxy: Reads alignment and SNP calling Europe Part of Cycle d'aprentissage sous Galaxy, INRA, Auzeville, France
Training offered by GTN Member
Philippe Bardou 		Europe Part of Cycle d'aprentissage sous Galaxy, INRA, Auzeville, France
Training offered by GTN Member
Philippe Bardou
May 10-14 EDGY—Export of data from Galaxy to Yabi, automated workflow transfer to command line tools North America The Biology of Genomes, Cold Spring Harbor Laboratory, New York, United States North America The Biology of Genomes, Cold Spring Harbor Laboratory, New York, United States David Molik
May 12-13 RNA-Seq and DNA-Seq Cancer Analyses Europe Rotterdam, The Netherlands
Training offered by GTN Member
Youri Hoogstrate 		Europe Rotterdam, The Netherlands
Training offered by GTN Member
Youri Hoogstrate
May 11-13 NGS & Cancer : Analyses RNA-Seq Europe Paris, France Europe Paris, France Cancéropôle Île-de-France
May 6 Variant detection using Galaxy Workshop Australia University of Queensland, St Lucia, Australia
Training offered by GTN Member
QFAB Training 		Australia University of Queensland, St Lucia, Australia
Training offered by GTN Member
QFAB Training
May 5 De novo genome assembly using Genomics Virtual Lab Workshop Australia University of Queensland, St Lucia, Australia
Training offered by GTN Member
QFAB Training, Xin-Yi Chua, Mike Thang 		Australia University of Queensland, St Lucia, Australia
Training offered by GTN Member
QFAB Training, Xin-Yi Chua, Mike Thang
April 28 Galaxy Workshop Tokyo 2016 Asia RCAST, The University of Tokyo, Japan Asia RCAST, The University of Tokyo, Japan Tazro Ohta, James Taylor Video (Japanese)
April 26 NGS Bioinformatics Data Analysis Workshop Europe NGS 2016 Glasgow, Glasgow, United Kingdom Europe NGS 2016 Glasgow, Glasgow, United Kingdom Julian Augley, Graham Hamilton, David Meltzer, Mani Mudaliar
April 22-26 Workshop on Galaxy: Practical Course North America SolBio International Conference 2016, Riviera Maya, México North America SolBio International Conference 2016, Riviera Maya, México Oswaldo Trelles
April 21 The Galaxy Portal: Accessing Galaxy from Mobile Devices and Tool Development Developments Around the World GalaxyAdmins Web Meetup, Online Around the World GalaxyAdmins Web Meetup, Online Ivar Grytten, Geir Kjetil Sandve, John Chilton, Hans-Rudolf Hotz
April 20 NeLS hands-on workshop Europe University of Oslo, Oslo, Norway Europe University of Oslo, Oslo, Norway Ståle Nygård
April 20 Galaxy Update North America BUG, Oregon State University, Corvallis, Oregon, United States North America BUG, Oregon State University, Corvallis, Oregon, United States Dave Clements
April 19 Utilisation de base du cloud IFB Europe IFB, Gif-sur-Yvette, France Europe IFB, Gif-sur-Yvette, France IFB
April 6-7 Galaxy DevOps Workshop - Galaxy and Galaxy tools deployment strategies Europe Galaxy DevOps Workshop 2016, Heidelberg, Germany
Training offered by GTN Member
Björn Grüning 		Europe Galaxy DevOps Workshop 2016, Heidelberg, Germany
Training offered by GTN Member
Björn Grüning
April 6 Approaches for the Integration of Visual and Computational Analysis of Biomedical Data North America BioIT World 2016, Boston, Massachusetts, United States North America BioIT World 2016, Boston, Massachusetts, United States Nils Gehlenborg
April 4 IUC Hackathon - Conda dependencies Around the World Online Around the World Online Björn Grüning, Rémi Marenco, Nitesh Turaga
March 17 Traitement bioinformatique des données RNA-Seq sous Galaxy Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France Formation Migale
March 16 Analyse primaire de données issues de séquenceurs nouvelle génération sous Galaxy
Full
 Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France Formation Migale
March 15 Initiation à l’utilisation de Galaxy
Full
 Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France Formation Migale
March 7-10 Training and knowledge-exchange for ELIXIR Galaxy service providers Europe ELIXIR All Hands 2016, Barcelona, Spain Europe ELIXIR All Hands 2016, Barcelona, Spain Frederik Coppens, Celia van Gelder, Pedro Fernandes Minutes, Action Items, Slides
March 7-8 IUC Contribution Fest - RADSeq Tools and Workflows Around the World Online Around the World Online IUC Writeup, Slides
February 29 - March 3 Formation Cloud et Galaxy IFB pour France Génomique Europe Campus CNRS de Gif-sur-Yvette, France
Training offered by GTN Member
IFB 		Europe Campus CNRS de Gif-sur-Yvette, France
Training offered by GTN Member
IFB 		Slides
February 20-23 (SW4) The Galaxy Platform for Multi-Omic Data Analysis and Informatics North America ABRF 2016, Fort Lauderdale, Florida, United States
Training offered by GTN Member
Pratik Jagtap, Tim Griffin, Dave Clements, Candace Guerrero, Getiria Onsongo 		North America ABRF 2016, Fort Lauderdale, Florida, United States
Training offered by GTN Member
Pratik Jagtap, Tim Griffin, Dave Clements, Candace Guerrero, Getiria Onsongo
February 15-19 Analyse bioinformatique de séquences sous Galaxy Europe Montpellier SupAgro, Montpellier, France
Training offered by GTN Member
Yolande Olivier, Dominique Alhinc 		Europe Montpellier SupAgro, Montpellier, France
Training offered by GTN Member
Yolande Olivier, Dominique Alhinc
February 14-19 Using Galaxy workflows for metabolomics (workflow4metabolomics.org) Europe EMBO Practical Course on Metabolomics Bioinformatics for Life Scientists, EMBL-EBI, Hinxton, United Kingdom Europe EMBO Practical Course on Metabolomics Bioinformatics for Life Scientists, EMBL-EBI, Hinxton, United Kingdom Etienne Thévenot
February 18 GalaxyAdmins Web Meetup Around the World Online Around the World Online Marius van den Beek, Nate Coraor,Hans-Rudolf Hotz, Dave Clements
February 16 Initiation à la plateforme web GALAXY Europe Galaxy User Group Grand Ouest (GUGGO), Rennes, France Europe Galaxy User Group Grand Ouest (GUGGO), Rennes, France
Training offered by GTN Member
Yvan Le Bras
February 11 BioTeam Galaxy Appliance: Simplify Hosting Your Own Galaxy (Software Demo) North America AGBT, Orlando, Florida, United States North America AGBT, Orlando, Florida, United States Anushka Brownley
February 8-9 Initiation à l’environnement UNIX et à la plateforme GALAXY Europe Montpellier OMICS Days 2016, Montpellier, France
Training offered by GTN Member
Yvan Le Bras 		Europe Montpellier OMICS Days 2016, Montpellier, France
Training offered by GTN Member
Yvan Le Bras
January 21, 22 Introduction to Galaxy Workshop North America Icahn School of Medicine at Mt. Sinai, New York, New York, United States
Training offered by GTN Member
Dave Clements, Andrew Sharp 		North America Icahn School of Medicine at Mt. Sinai, New York, New York, United States
Training offered by GTN Member
Dave Clements, Andrew Sharp 		Slides
January 21 RNA-Seq analysis using Galaxy Workshop Australia QFAB, Brisbane, Queensland, Australia Australia QFAB, Brisbane, Queensland, Australia Melinda Beawer
January 19 An introduction to clinical bioinformatics Europe Festival of Genomics London, London, United Kingdom Europe Festival of Genomics London, London, United Kingdom Ang Davies
January 19 NGS Data Analysis in Galaxy (CTMM-TraIT course) Europe VU University Medical Center Amsterdam, The Netherlands Europe VU University Medical Center Amsterdam, The Netherlands Christian Rausch, Youri Hoogstrate, Rita Azevedo
January 8, 15 Introduction to NGS data analysis Europe VIB, Leuven, Belgium Europe VIB, Leuven, Belgium Janick Mathys
January 9-13 Plant and Animal Genome (PAG XXIV) North America San Diego, California, United States
Training offered by GTN Member
See presenters 		North America San Diego, California, United States
Training offered by GTN Member
See presenters
January 8 Introduction to Galaxy Workshop North America Arizona State University, Tempe, Arizona, United States
Training offered by GTN Member
Nico Franz, Melissa A. Wilson Sayres, Anton Nekrutenko 		North America Arizona State University, Tempe, Arizona, United States
Training offered by GTN Member
Nico Franz, Melissa A. Wilson Sayres, Anton Nekrutenko
@@ -1029,15 +1029,15 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e December 18 Galaxy Session - Europe III Bioinformatics and Computational Biology Symposium, Barcelona, Spain + Europe III Bioinformatics and Computational Biology Symposium, Barcelona, Spain Email December 3 RNA-Seq Analysis Using Galaxy - Australia University of Newcastle, Newcastle, NSW, Australia -
Training offered by GTN Member
Mark Crowe, Katherine Champ + Australia University of Newcastle, Newcastle, NSW, Australia +
Training offered by GTN Member
Mark Crowe, Katherine Champ @@ -1048,7 +1048,7 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e November 30 - December 1 IUC Contribution Fest - Metagenomics Tools and Workflows - Around the World Online + Around the World Online IUC, John Chilton @@ -1066,14 +1066,14 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e November 25 Advanced RNA-Seq DGE with Galaxy - Australia VLSCI, Carlton, VIC, Australia -
Training offered by GTN Member
VLSCI + Australia VLSCI, Carlton, VIC, Australia +
Training offered by GTN Member
VLSCI November 18 Hackathon Galaxy 2015
Register here
- Europe Institut Pasteur, Paris, France + Europe Institut Pasteur, Paris, France Email @@ -1085,14 +1085,14 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e November 17-18 Analyse de données RNA-seq sous l’environnement Galaxy - Europe PRABI, Lyon, France + Europe PRABI, Lyon, France
Training offered by GTN Member
Email November 15-16 Analyse de données RNA-seq sous l’environnement Galaxy - Europe PRABI, Lyon, France + Europe PRABI, Lyon, France
Training offered by GTN Member
Email @@ -1106,27 +1106,27 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e November 12 BioTeam & UC Davis Webinar: Introduction to Genomics Data Analysis with Galaxy - Around the World Webinar - Open to all + Around the World Webinar - Open to all Email November 5 RNA-Seq Differential Gene Expression Analysis using Galaxy - Australia VLSCI, Carlton, VIC, Australia -
Training offered by GTN Member
VLSCI + Australia VLSCI, Carlton, VIC, Australia +
Training offered by GTN Member
VLSCI Advanced Variant Calling with Galaxy -
Training offered by GTN Member
VLSCI +
Training offered by GTN Member
VLSCI November 3 Galaxy for the Analysis of Very Large Biomedical Data Workshop - North America Festival of Genomics California, San Mateo, California, United States -
Training offered by GTN Member
Dan Blankenberg, John Chilton + North America Festival of Genomics California, San Mateo, California, United States +
Training offered by GTN Member
Dan Blankenberg, John Chilton @@ -1142,8 +1142,8 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e October 28 - November 3 Computational & Comparative Genomics Course - North America Cold Spring Harbor Laboratory, New York, United States -
Training offered by GTN Member
James Taylor + North America Cold Spring Harbor Laboratory, New York, United States +
Training offered by GTN Member
James Taylor @@ -1153,7 +1153,7 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e October 28-31 Hidden RNA codes revealed from the plant in vivo RNA structurome - North America Genome Informatics 2015, Cold Spring Harbor Laboratory, New York, United States + North America Genome Informatics 2015, Cold Spring Harbor Laboratory, New York, United States Yin Tang @@ -1195,70 +1195,70 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e October 29 Introduction to Proteomics with Galaxy - Australia VLSCI, Carlton, VIC, Australia -
Training offered by GTN Member
VLSCI + Australia VLSCI, Carlton, VIC, Australia +
Training offered by GTN Member
VLSCI October 28-29 Workshop: Extended RNA-Seq analysis - Australia QFAB, University of Queensland, St Lucia, Australia -
Training offered by GTN Member
Mark Crowe + Australia QFAB, University of Queensland, St Lucia, Australia +
Training offered by GTN Member
Mark Crowe October 20 Variant calling with Galaxy (beginners) - Australia VLSCI, Carlton, VIC, Australia -
Training offered by GTN Member
VLSCI + Australia VLSCI, Carlton, VIC, Australia +
Training offered by GTN Member
VLSCI October 15 October Galaxy Admins Meetup - Around the World Online + Around the World Online David Kovalic, Hans-Rudolf Hotz, Dave Clements Video, Slides October 14 Using GenAP and Galaxy for Genomics analysis - North America Sherbrooke, Québec, Canada + North America Sherbrooke, Québec, Canada Frédéric Robidoux October 12-14 Analyse avancée de séquences - Europe Bordeaux Bioinformatics Center, University Bordeaux Segalen, France + Europe Bordeaux Bioinformatics Center, University Bordeaux Segalen, France Email October 10-11 The Microbial Genomics Virtual Laboratory - Australia ABACBS 2015 Conference, Sydney, NSW, Australia + Australia ABACBS 2015 Conference, Sydney, NSW, Australia Simon Gladman October 9 Introduction to Integrative Analysis with GenomeSpace Workshop - North America ASHG 2015, Baltimore, Maryland, United States + North America ASHG 2015, Baltimore, Maryland, United States GenomeSpace October 8 Introduction to Galaxy - Australia VLSCI, Carlton, VIC, Australia -
Training offered by GTN Member
VLSCI + Australia VLSCI, Carlton, VIC, Australia +
Training offered by GTN Member
VLSCI October 1 Proteogenomics and Metaproteomics using the GalaxyP Platform - Asia CSIR-Institute of Genomics & Integrative Biology (IGIB), New Dehli, India + Asia CSIR-Institute of Genomics & Integrative Biology (IGIB), New Dehli, India Pratik Jagtap @@ -1269,112 +1269,112 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e September 30 Proteogenomics and Metaproteomics using the GalaxyP Platform - Asia Jawaharlal Nehru University, New Dehli, India + Asia Jawaharlal Nehru University, New Dehli, India Pratik Jagtap September 27-30 TRAPLINE: An Integrated Galaxy Pipeline for RNAseq Data Processing, Evaluation and Prediction - Europe German Conference on Bioinformatics (GCB), Dortmund, Germany + Europe German Conference on Bioinformatics (GCB), Dortmund, Germany Markus Wolfien, also see TRAPLINE Manual September 28-30 Next generation sequencing (NGS) data analysis - Europe University Medical Centre Groningen, The Netherlands -
Training offered by GTN Member
BioSB Education + Europe University Medical Centre Groningen, The Netherlands +
Training offered by GTN Member
BioSB Education September 28 Mutational Analysis with Random DNA Identifiers (MARDI), a High-Fidelity NGS Approach That Simultaneously Identifies Gene Marker Mutations from Heterogeneous Mutant Cell Populations - North America Environmental Mutagenesis and Genomics Society (EMGS), New Orleans, Louisiana, United States + North America Environmental Mutagenesis and Genomics Society (EMGS), New Orleans, Louisiana, United States Javier Revollo September 21-25 Traitement des données métabolomiques sous Galaxy - Europe Station Biologique de Roscoff, France + Europe Station Biologique de Roscoff, France
Training offered by GTN Member
W4M Course Organisers September 24 Proteogenomics and Metaproteomics using the GalaxyP Platform - Asia IICT-CSIR, Hyderabad, India + Asia IICT-CSIR, Hyderabad, India Pratik Jagtap September 23 Proteogenomics and Metaproteomics using the GalaxyP Platform - Asia CSIR-CCMB, Hyderabad, India + Asia CSIR-CCMB, Hyderabad, India Pratik Jagtap September 21-23 JHU-DaSH: Data Science Hackathon - North America Baltimore, Maryland, United States + North America Baltimore, Maryland, United States Email September 21 Proteogenomics and Metaproteomics using the GalaxyP Platform - Asia IIT Bombay, Bombay, India + Asia IIT Bombay, Bombay, India Pratik Jagtap September 17-18 Remote Hackathon for Tools and Dataset Collections - Around the World Online + Around the World Online IUC September 17-18 Utilizing the Galaxy Analysis Framework at Core Facilities - North America Western Association of Core Directors (WACD) Annual Meeting, Portland, Oregon, United States + North America Western Association of Core Directors (WACD) Annual Meeting, Portland, Oregon, United States Dave Clements Slides, Slides with notes September 14-18 Using Galaxy for Analysis of High Throughput Sequence Data - North America UC Davis Bioinformatics Core, Davis, California, United States + North America UC Davis Bioinformatics Core, Davis, California, United States
Training offered by GTN Member
UC Davis Bioinformatics September 15 Towards accessible, reproducible, and transparent research in the life sciences: an innovative open source VRE approach in Western France - North America HUBbub 2015, Indianapolis, Indiana, United States + North America HUBbub 2015, Indianapolis, Indiana, United States Yvan Le Bras September 9 Initiation à la plateforme web GALAXY - Europe Galaxy User Group Grand Ouest (GUGGO), Rennes, France + Europe Galaxy User Group Grand Ouest (GUGGO), Rennes, France
Training offered by GTN Member
Cyril Monjeaud, Yvan Le Bras September 7-9 RNA-seq data analysis NGS Course - Europe Leiden University Medical Center, The Netherlands + Europe Leiden University Medical Center, The Netherlands
Training offered by GTN Member
BioSB Education September 2 Scaling Up Bioinformatics Workflows with Dynamic Job Expansion: A Case Study Using Galaxy and Makeflow - Europe IEEE eScience 2015, Munich, Germany + Europe IEEE eScience 2015, Munich, Germany Nicholas Hazekamp Paper @@ -1385,14 +1385,14 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e August 20 Genomic data management at Canada's National Microbiology Laboratory with IRIDA and Galaxy - Around the World August 2015 GalaxyAdmins Web Meetup, Online + Around the World August 2015 GalaxyAdmins Web Meetup, Online Hans-Rudolf Hotz, Aaron Petkau Slides, Video August 10 Big Data Services: Globus Online, Galaxy, GridFTP - North America Joint Statistical Meetings (JSM2015), Seattle, Washington, United States + North America Joint Statistical Meetings (JSM2015), Seattle, Washington, United States Ravi Madduri @@ -1403,28 +1403,28 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e July 23 Pitagora-Galaxy Meetup - Asia National Institute of Informatics, Tokyo, Japan + Asia National Institute of Informatics, Tokyo, Japan Ryota Yamanaka, et al. Summary July 10-14 BOSC 2015 & ISMB/ECCB 2015
10+ Galaxy related talks, posters, panel discussions, ...
- Europe Dublin, Ireland + Europe Dublin, Ireland See presenters Slides July 6-10 An Introduction to Galaxy with the Genomics Virtual Lab: workshop - AustraliaWinter School in Mathematical and Computational Biology, University of Queensland, Brisbane, Queensland, Australia + AustraliaWinter School in Mathematical and Computational Biology, University of Queensland, Brisbane, Queensland, Australia
Training offered by GTN Member
Mark Crowe July 6-9 Workflow4Metabolomics: A collaborative research infrastructure for computational metabolomics - EuropeJOBIM 2015, Clermont-Ferrand, France + EuropeJOBIM 2015, Clermont-Ferrand, France Mélanie Pétéra @@ -1481,7 +1481,7 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e July 4-8 2015 Galaxy Community Conference (GCC2015) - Europe The Sainsbury Lab, Norwich, United Kingdom + Europe The Sainsbury Lab, Norwich, United Kingdom GCC2015 Organisers @@ -1499,7 +1499,7 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e July 5
Training SunDay
-
Training offered by GTN Member
GCC2015 Organisers +
Training offered by GTN Member
GCC2015 Organisers @@ -1527,8 +1527,8 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e June 22 Massively parallel sequence data analysis workshop (introduction to Galaxy framework for variant calling) - Australia Part of Short Course in Medical Genetics and Genetic Pathology 2015, Sydney, Australia -
Training offered by GTN Member
Ross Lazarus, Andrew Lonie + Australia Part of Short Course in Medical Genetics and Genetic Pathology 2015, Sydney, Australia +
Training offered by GTN Member
Ross Lazarus, Andrew Lonie @@ -1548,14 +1548,14 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e June 18 GenAP: Computing platform for life sciences research - North America HPCS 2015, Montreal, Quebec, Canada + North America HPCS 2015, Montreal, Quebec, Canada Pierre-Etienne Jacques, Carol Gauthier June 18 Galactic Engineering: Experiences deploying Galaxy and developing tools within the Bioinformatics Core Facility at the University of Manchester - Around the World June 2015 GalaxyAdmins Web Meetup, Online + Around the World June 2015 GalaxyAdmins Web Meetup, Online Peter Briggs, John Chilton, Hans-Rudolf Hotz Slides @@ -1569,49 +1569,49 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e June 11-12 Introduction to Galaxy: RNA-seq and ChIP-seq data analysis Workshop - Europe University of Cambridge, Cambridge, United Kingdom -
Training offered by GTN Member
Dave Clements + Europe University of Cambridge, Cambridge, United Kingdom +
Training offered by GTN Member
Dave Clements Slides June 10-11 Informatics on High-throughput Sequencing Data - North America Toronto, Ontario, Canada + North America Toronto, Ontario, Canada
Training offered by GTN Member
Francis Ouellette Slides, Video June 8-9 Introduction to Galaxy Workshop
Workshop is full, but there is a waiting list
- Europe University of Glasgow, Glasgow, United Kingdom -
Training offered by GTN Member
Dave Clements + Europe University of Glasgow, Glasgow, United Kingdom +
Training offered by GTN Member
Dave Clements Slides June 6-9 WS02: NGS Variant Analysis with Galaxy - Europe ESHG 2015, Glasgow, United Kingdom -
Training offered by GTN Member
Dave Clements + Europe ESHG 2015, Glasgow, United Kingdom +
Training offered by GTN Member
Dave Clements Slides June 4 Analysis Reproducibility - North America Reproducibility of Data Collection and Analysis: Modern Technologies in Genome Technology: Potentials and Pitfalls, NIH, Bethesda, Maryland, United States + North America Reproducibility of Data Collection and Analysis: Modern Technologies in Genome Technology: Potentials and Pitfalls, NIH, Bethesda, Maryland, United States James Taylor Slides, Video (Chapter 8) May 31 - June 4 63rd ASMS Conference on Mass Spectrometry and Allied Topics
At least 4 talks and 5 posters
- North America St. Louis, Missouri, United States + North America St. Louis, Missouri, United States Speaker List June 2 Initiation à l’utilisation de Galaxy - Europe Jouy-en-Josas, France
Partie du Cycle "Bioinformatique par la pratique" 2015
+ Europe Jouy-en-Josas, France
Partie du Cycle "Bioinformatique par la pratique" 2015
Veronique Martin, Sophie Schbath @@ -1628,7 +1628,7 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e June 3 Workshop: RNA-Seq analysis using Galaxy - Australia QFAB, University of Queensland, St Lucia, Australia + Australia QFAB, University of Queensland, St Lucia, Australia
Training offered by GTN Member
Mark Crowe @@ -1639,7 +1639,7 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e May 25-29 Cloudflow – A Framework for MapReduce Pipeline Development in Biomedical Research - Europe MIPRO, Opatija, Croatia + Europe MIPRO, Opatija, Croatia Lucas Forer @@ -1651,56 +1651,56 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e May 22, 29 Introduction to the analysis of NGS data
Registration is closed
- Europe Leuven, Belgium + Europe Leuven, Belgium Janick Mathys May 26-28 Workshop on the Application of Next Generation Sequencing to Repetitive DNA Analysis in Plants
Registration is closed
- Europe České Budějovice, Czech Republic + Europe České Budějovice, Czech Republic Jiri Macas May 27 Introduction to Galaxy for Next Generation Sequencing Analysis - North America Penn State College of Medicine, Hershey, Pennsylvania, United States + North America Penn State College of Medicine, Hershey, Pennsylvania, United States
Training offered by GTN Member
Anton Nekrutenko, Jill Curry May 22 Using GenAP and Galaxy for Genomics analysis - North America Sherbrooke, Québec, Canada + North America Sherbrooke, Québec, Canada Frédéric Robidoux May 15 RNA-Seq Galaxy Workshop - North America Penn State University, State College, Pennsylvania, United States -
Training offered by GTN Member
Martin Cech, Anton Nekrutenko + North America Penn State University, State College, Pennsylvania, United States +
Training offered by GTN Member
Martin Cech, Anton Nekrutenko Slides May 13 Workshop: Variant detection using Galaxy - Australia QFAB, University of Queensland, St Lucia, Australia + Australia QFAB, University of Queensland, St Lucia, Australia
Training offered by GTN Member
Mark Crowe May 13 Getting Bioinformatics Done with Galaxy - North America BGI @ UC Davis workshop series, Davis, California, United States + North America BGI @ UC Davis workshop series, Davis, California, United States
Training offered by GTN Member
UC Davis Bioinformatics May 12 Initiation à l’utilisation de Galaxy - Europe Jouy-en-Josas, France
Partie du Cycle "Bioinformatique par la pratique" 2015
+ Europe Jouy-en-Josas, France
Partie du Cycle "Bioinformatique par la pratique" 2015
Veronique Martin, Sophie Schbath @@ -1719,7 +1719,7 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e April 27 - May 3 High-throughput Biology: From Sequence to Networks 2015 - North America New York City, New York, United States + North America New York City, New York, United States
Training offered by GTN Member
Francis Ouellette Slides, Video @@ -1730,21 +1730,21 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e April 28 Galaxy Workshop Tokyo 2015 - Asia RCAST, The University of Tokyo, Japan + Asia RCAST, The University of Tokyo, Japan Ryota Yamanaka Slides April 28 http://biosb.nl/events/eps-postgraduate-course-genome-assembly-2nd-edition/Genome Assembly, EPS Postgraduate course - Europe Wageningen University, The Netherlands + Europe Wageningen University, The Netherlands BioSB Education April 21 Workshop: Large Scale NGS Analysis Using Globus Genomics - North America Bio-IT World 2015, Boston, Massachusetts, United States + North America Bio-IT World 2015, Boston, Massachusetts, United States Paul Davé, Ravi Madduri, Alex Rodriguez, Dinanath Sulakhe @@ -1768,7 +1768,7 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e April 18-21 Towards a Cloud-ready Cancer Genomics Analysis Pipeline - North America Canadian Human and Statistical Genetics Meeting, Vancouver, British Columbia, Canada + North America Canadian Human and Statistical Genetics Meeting, Vancouver, British Columbia, Canada Bruno Grande @@ -1825,7 +1825,7 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e April 1 Workshop: NGS Analysis and Workflows using Galaxy Stanford Center for Genomics & Personalized Medicine, Stanford University, Palo Alto, CA, United States -
Training offered by GTN Member
Ramesh V Nair, Somalee Datta, Jennifer Jackson, Anushka Brownley +
Training offered by GTN Member
Ramesh V Nair, Somalee Datta, Jennifer Jackson, Anushka Brownley @@ -1893,7 +1893,7 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e March 17 Using Galaxy Workshop Penn State University, State College, Pennsylvania, United States -
Training offered by GTN Member
Martin Cech, Anton Nekrutenko +
Training offered by GTN Member
Martin Cech, Anton Nekrutenko @@ -1914,7 +1914,7 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e March 2-3 Workshop on Bioinformatics Methods in Genomics RBI, Zagreb, Croatia -
Training offered by GTN Member
Enis Afgan +
Training offered by GTN Member
Enis Afgan @@ -1932,7 +1932,7 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e February 27 Introduction to Galaxy Workshop Northwestern University, Chicago, Illinois, United States -
Training offered by GTN Member
Dave Clements, Matt Schipma +
Training offered by GTN Member
Dave Clements, Matt Schipma Slides @@ -2135,7 +2135,7 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e December 19 BioMaS: a friendly web service for improved taxonomic assessment of microbiomes - Europe BiP-Day 2014: Seconda Giornata della Bioinformatica Pugliese, Bari, Italy + Europe BiP-Day 2014: Seconda Giornata della Bioinformatica Pugliese, Bari, Italy B Fosso Abstract @@ -2147,28 +2147,28 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e December 16-19 RNA-Seq and ChIP-Seq Analysis with Galaxy - North America UC Davis, California, United States + North America UC Davis, California, United States UC Davis Bioinformatics Training December 12 Introduction to Galaxy Workshop - North America Virginia State University, Petersburg, Virginia, United States + North America Virginia State University, Petersburg, Virginia, United States Slides Glenn Harris, Dave Clements December 9-11 Microarray data analysis on Galaxy - Europe BIRD IFB core facility Nantes University/INSERM, Nantes, France + Europe BIRD IFB core facility Nantes University/INSERM, Nantes, France Raluca Teusan, Audrey Bihouée, Edouard Hirchaud December 8-9 Implementing qDNAseq in Galaxy: a whole genome sequencing copy number analysis tool - Europe Benelux Bioinformatics Conference (BBC 2014) + Europe Benelux Bioinformatics Conference (BBC 2014) Poster Stef van Lieshout @@ -2180,21 +2180,21 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e December 5-8 Next Generation Data Analysis Workshop - North America UC Riverside, Riverside, California, United States + North America UC Riverside, Riverside, California, United States Complete Workshop; Galaxy slides, exercises, manual Rakesh Kaundal December 3 Using GenAP and Galaxy for Genomics analysis - North America Sherbrooke, Québec, Canada + North America Sherbrooke, Québec, Canada Sharen Roland Materials December 3 Galaxy Day - Europe Institut Curie, Paris, France + Europe Institut Curie, Paris, France IFB Galaxy @@ -2204,7 +2204,7 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e November 26-28 Alveo, a Human Communication Science Virtual Laboratory - Australia Australasian Language Technology Workshop 2014, Melbourne, Victoria, Australia + Australia Australasian Language Technology Workshop 2014, Melbourne, Victoria, Australia Paper Dominique Estival @@ -4561,7 +4561,7 @@ Listing of Galaxy events from 2016 and before. See the main [Galactic Events](/e June 23-24 - Galaxy Workshops @ USC + Galaxy Workshops @ USC Los Angeles, California, United States Intro talk slides, NGS analyses slides, ISI seminar slides Jeremy Goecks diff --git a/content/events/eccb2014/index.md b/content/events/eccb2014/index.md index 18ab88f992..cfc4fe0b12 100644 --- a/content/events/eccb2014/index.md +++ b/content/events/eccb2014/index.md @@ -49,7 +49,7 @@ There were several sessions and posters featuring Galaxy at the [13th European C 19:30-20:30 J04: SMITH: managing NGS data and workflows in a sequencing facility - Poster + Poster Yuriy Vaskin, Francesco Venco and Heiko Muller diff --git a/content/events/galaxy-tour-de-france2012/index.md b/content/events/galaxy-tour-de-france2012/index.md index 360cd5ac0b..ce4a8e86b7 100644 --- a/content/events/galaxy-tour-de-france2012/index.md +++ b/content/events/galaxy-tour-de-france2012/index.md @@ -41,7 +41,7 @@ Galaxy went on tour in France during the last week of May. Workshops were help **Location:** -
Perpignan Workshop location. Click to enlarge.
Perpignan workshop location
+
Perpignan Workshop location. Click to enlarge.
Perpignan workshop location
The workshops will be held in the seminar room of the [Laboratoire Génome et Développement des Plantes (LGDP)](http://lgdp.univ-perp.fr/index.php?page=laboratoire_2) of the [University of Perpignan](http://univ-perp.fr), the address details are: @@ -68,7 +68,7 @@ The workshops will be held in the seminar room of the [Laboratoire Génome et D ## Paris: 1 June -
Paris Workshop location and nearby Metro and RER stations. Click to enlarge.
Paris workshop location
nearby Metro & RER stations.
+
Paris Workshop location and nearby Metro and RER stations. Click to enlarge.
Paris workshop location
nearby Metro & RER stations.
**Location:** diff --git a/content/events/gcc2011/index.md b/content/events/gcc2011/index.md index dbaaa703ad..b7d1dce02e 100644 --- a/content/events/gcc2011/index.md +++ b/content/events/gcc2011/index.md @@ -5,7 +5,7 @@ days: 2 tease: "GDC becomes GCC, and moves to Europe" continent: EU location: "Lunteren, The Netherlands" -image: /src/events/GCC2011Logo400.png +image: /events/GCC2011Logo400.png location_url: http://www.congrescentrum.com/accommodations/de_werelt external_url: https://galaxyproject.org/gcc2011/ contact: Organizers diff --git a/content/events/gcc2012/index.md b/content/events/gcc2012/index.md index 30b456728b..13ad76a514 100644 --- a/content/events/gcc2012/index.md +++ b/content/events/gcc2012/index.md @@ -9,7 +9,7 @@ location_url: http://www.uicforum.uic.edu/ external_url: gtn: false contact: Organisers -image: /src/images/galaxy-logos/GCC2012LogoWide400.png +image: /images/galaxy-logos/GCC2012LogoWide400.png --- **The 2012 Galaxy Community Conference (GCC2012) was held July 25-27 at the [UIC Forum](http://www.uicforum.uic.edu/) at [University of Illinois Chicago](http://uic.edu/).** diff --git a/content/events/gcc2012/promotion/index.md b/content/events/gcc2012/promotion/index.md index 30c36ea223..41d002ddda 100644 --- a/content/events/gcc2012/promotion/index.md +++ b/content/events/gcc2012/promotion/index.md @@ -32,19 +32,19 @@ The conference logo is available in 2 formats in several widths. Logo only - Download - Download - Download - Download - Download + Download + Download + Download + Download + Download Logo plus text - Download - Download - Download - Download - Download + Download + Download + Download + Download + Download diff --git a/content/events/gcc2012/training-day/vms/index.md b/content/events/gcc2012/training-day/vms/index.md index 9c46ab46cb..12c32e2c37 100644 --- a/content/events/gcc2012/training-day/vms/index.md +++ b/content/events/gcc2012/training-day/vms/index.md @@ -76,25 +76,25 @@ This image will have a configured and running Galaxy instance. - + - + - + - + - + - + - +
Appliance Import Settings Window; click to enlarge
1.3. Appliance Import 		Appliance Import Settings Window; click to enlarge
1.3. Appliance Import
VM successfully imported; click to enlarge
1.4. VM Imported 		VM successfully imported; click to enlarge
1.4. VM Imported
VM settings; click to enlarge
1.5.1 VM settings 		VM settings; click to enlarge
1.5.1 VM settings
Port forwarding rules; click to enlarge
1.5.3 Port forwarding rules 		Port forwarding rules; click to enlarge
1.5.3 Port forwarding rules
Mouse Pointer info window; click to enlarge
2.1. An info screens 		Mouse Pointer info window; click to enlarge
2.1. An info screens
List of defined users; click to enlarge
2.2. Defined users 		List of defined users; click to enlarge
2.2. Defined users
The XFCE Desktop; click to enlarge
2.3. The XFCE Desktop 		The XFCE Desktop; click to enlarge
2.3. The XFCE Desktop
diff --git a/content/events/gcc2013/index.md b/content/events/gcc2013/index.md index 0c26cd0080..8e268ecc88 100644 --- a/content/events/gcc2013/index.md +++ b/content/events/gcc2013/index.md @@ -9,7 +9,7 @@ location_url: http://www.uio.no/ external_url: gtn: false contact: Organisers -image: /src/images/logos/GCC2013Logo400.png +image: /images/logos/GCC2013Logo400.png ---

diff --git a/content/events/gcc2013/promotion/index.md b/content/events/gcc2013/promotion/index.md index 6cea803b60..7d3481dae2 100644 --- a/content/events/gcc2013/promotion/index.md +++ b/content/events/gcc2013/promotion/index.md @@ -33,28 +33,28 @@ The conference logos are available in several sizes. 200 px - Download - Download + Download + Download 400 px - Download - Download + Download + Download 600 px - Download + Download 800 px - Download + Download Full Download - Download + Download diff --git a/content/events/gcc2013/training-day/index.md b/content/events/gcc2013/training-day/index.md index 4e147959b9..18cc748906 100644 --- a/content/events/gcc2013/training-day/index.md +++ b/content/events/gcc2013/training-day/index.md @@ -450,7 +450,7 @@ See each individual workshop's list of prerequisite for specifics. Content - Learn the ins and outs of the Galaxy Applications Programming Interface (API). Examples of how to interact with multiple Galaxy resources and how to build a complex script from API building blocks. Details. + Learn the ins and outs of the Galaxy Applications Programming Interface (API). Examples of how to interact with multiple Galaxy resources and how to build a complex script from API building blocks. Details. Prerequisites diff --git a/content/events/gcc2014/index.md b/content/events/gcc2014/index.md index dc993501a5..f009c66cf3 100644 --- a/content/events/gcc2014/index.md +++ b/content/events/gcc2014/index.md @@ -9,7 +9,7 @@ location_url: https://jhu.edu external_url: gtn: false contact: Organizers -image: /src/images/logos/GCC2014LogoWide400.png +image: /images/logos/GCC2014LogoWide400.png tags: [ cofest ] --- diff --git a/content/events/gcc2014/program/index.md b/content/events/gcc2014/program/index.md index 1df87dde8c..9c3ae4ed48 100644 --- a/content/events/gcc2014/program/index.md +++ b/content/events/gcc2014/program/index.md @@ -315,7 +315,7 @@ Moderator: [Mohammad Heydarian](http://epigenetics.jhu.edu/?section=personnelPag 9:10 - The GCC2014 Hackathon
Dannon Baker, Brad Chapman, John Chilton, Kyle Ellrott, and GCC2014 Hackathon Participants
+ The GCC2014 Hackathon
Dannon Baker, Brad Chapman, John Chilton, Kyle Ellrott, and GCC2014 Hackathon Participants
9:30 diff --git a/content/events/gcc2014/promotion/index.md b/content/events/gcc2014/promotion/index.md index 998975411d..6e98704f57 100644 --- a/content/events/gcc2014/promotion/index.md +++ b/content/events/gcc2014/promotion/index.md @@ -25,23 +25,23 @@ The conference logos are available in several sizes. Conference, Wide - 200px, 400px, 600px, Full + 200px, 400px, 600px, Full Conference, Tall - 200px, 400px, Full + 200px, 400px, Full Training Day - 150px, 300px, Full + 150px, 300px, Full BoFs - 200px, 300px, Full + 200px, 300px, Full Hackathon - 200px, 300px, Full + 200px, 300px, Full diff --git a/content/events/gcc2014/training-day/data-managers/index.md b/content/events/gcc2014/training-day/data-managers/index.md index 8415b3bb84..1a79656ccb 100644 --- a/content/events/gcc2014/training-day/data-managers/index.md +++ b/content/events/gcc2014/training-day/data-managers/index.md @@ -46,7 +46,7 @@ This session covers the tool and ToolShed requirements for using reference data ## 15:40-16:00 Using Reference Data in Galaxy Tools * Graphical Overview of Interplay between Built-in Data and Galaxy Tools - + * Discussion of *.loc files * Used as a way to provide additional configuration details to a tool, without having to manually edit the actual tool XML file. diff --git a/content/events/gcc2015/header.md b/content/events/gcc2015/header.md index 83785663d4..5bcdfbe43e 100644 --- a/content/events/gcc2015/header.md +++ b/content/events/gcc2015/header.md @@ -1,5 +1,5 @@
-[2015 Galaxy Community Conference (GCC2015)](http://gcc2015.tsl.ac.uk/) +[2015 Galaxy Community Conference (GCC2015)](http://gcc2015.tsl.ac.uk/)
[GCC2015 is done](http://gcc2015.tsl.ac.uk/). *[GCC2018 is coming](https://gccbosc2018.sched.com).* diff --git a/content/events/gcc2015/index.md b/content/events/gcc2015/index.md index 924b11315c..c17d14a2e5 100644 --- a/content/events/gcc2015/index.md +++ b/content/events/gcc2015/index.md @@ -9,7 +9,7 @@ location_url: http://www.tsl.ac.uk/ external_url: http://gcc2015.tsl.ac.uk/ gtn: true contact: Organisers -image: /src/images/logos/GCC2015LogoSimple300.png +image: /images/logos/GCC2015LogoSimple300.png tags: [ cofest ] --- diff --git a/content/events/ismb2013/index.md b/content/events/ismb2013/index.md index 9a5c650ffe..dbe6ccc22f 100644 --- a/content/events/ismb2013/index.md +++ b/content/events/ismb2013/index.md @@ -118,7 +118,7 @@ Galaxy had a significant presence at [ISMB/ECCB](http://www.iscb.org/ismbeccb201 B26: GenomeSpace: An environment for frictionless bioinformatics, Michael Reich - Poster, Graphic + Poster, Graphic B60: Tools for the correction, analysis and visualization of next generation sequencing data, Fidel Ramírez diff --git a/content/events/rt-workshop-tour2013/index.md b/content/events/rt-workshop-tour2013/index.md index 1d504d70f8..e396fd6a01 100644 --- a/content/events/rt-workshop-tour2013/index.md +++ b/content/events/rt-workshop-tour2013/index.md @@ -20,7 +20,7 @@ Doing research in the Research Triangle? A [Galaxy Workshop Tour](/events/) is - 2013 GMOD Summer School
Friday July 19 through Tuesday July 23
Application deadline is June 10


+ 2013 GMOD Summer School
Friday July 19 through Tuesday July 23
Application deadline is June 10


diff --git a/content/events/sg2014/header.md b/content/events/sg2014/header.md index 4e94775dc3..8d7a9ccca1 100644 --- a/content/events/sg2014/header.md +++ b/content/events/sg2014/header.md @@ -1,4 +1,4 @@ -
2014 Swiss German Galaxy Tour
-#SG2014T [#SG2014T](https://twitter.com/hashtag/SG2014T) +
2014 Swiss German Galaxy Tour
+#SG2014T [#SG2014T](https://twitter.com/hashtag/SG2014T)


diff --git a/content/events/sg2016/header.md b/content/events/sg2016/header.md index b6f745774d..c20eb08a2a 100644 --- a/content/events/sg2016/header.md +++ b/content/events/sg2016/header.md @@ -1,4 +1,4 @@ -
2016 Swiss German Galaxy Tour
-#SG2016T [#SG2016T](https://twitter.com/hashtag/SG2016T) +
2016 Swiss German Galaxy Tour
+#SG2016T [#SG2016T](https://twitter.com/hashtag/SG2016T)


diff --git a/content/faqs/linkbox.md b/content/faqs/linkbox.md index 56f86a717d..a29566d24f 100644 --- a/content/faqs/linkbox.md +++ b/content/faqs/linkbox.md @@ -6,7 +6,7 @@ [Main](/main/faq/) [Learn](/learn/faq/) -[Admin](/admin/faq/index.md) +[Admin](/admin/faq/)
diff --git a/content/galaxy-updates/2015-09/index.md b/content/galaxy-updates/2015-09/index.md index f77e674515..2b0218d489 100644 --- a/content/galaxy-updates/2015-09/index.md +++ b/content/galaxy-updates/2015-09/index.md @@ -183,55 +183,55 @@ There are [upcoming events](/events/) in five countries on three continents. Se September 2 Scaling Up Bioinformatics Workflows with Dynamic Job Expansion: A Case Study Using Galaxy and Makeflow - Europe IEEE eScience 2015, Munich, Germany + Europe IEEE eScience 2015, Munich, Germany Nicholas Hazekamp September 2-3 Workshop: Extended RNA-Seq analysis - Australia QFAB, University of Queensland, St Lucia, Australia + Australia QFAB, University of Queensland, St Lucia, Australia
Training offered by GTN Member
Mark Crowe September 7-9 RNA-seq data analysis NGS Course - Europe Leiden University Medical Center, The Netherlands + Europe Leiden University Medical Center, The Netherlands
Training offered by GTN Member
BioSB Education September 14-18 Using Galaxy for Analysis of High Throughput Sequence Data - North America UC Davis Bioinformatics Core, Davis, California, United States + North America UC Davis Bioinformatics Core, Davis, California, United States
Training offered by GTN Member
UC Davis Bioinformatics September 15 Towards accessible, reproducible, and transparent research in the life sciences: an innovative open source VRE approach in Western France - North America HUBbub 2015, Indianapolis, Indiana, United States + North America HUBbub 2015, Indianapolis, Indiana, United States Yvan Le Bras September 17-18 Remote Hackathon for Tools and Dataset Collections - Around the World Online + Around the World Online IUC September 21-23 JHU-DaSH: Data Science Hackathon - North America Baltimore, Maryland, United States + North America Baltimore, Maryland, United States Email September 21-25 Traitement des données métabolomiques sous Galaxy - Europe Station Biologique de Roscoff, France + Europe Station Biologique de Roscoff, France
Training offered by GTN Member
W4M Course Organisers September 28 Mutational Analysis with Random DNA Identifiers (MARDI), a High-Fidelity NGS Approach That Simultaneously Identifies Gene Marker Mutations from Heterogeneous Mutant Cell Populations - North America Environmental Mutagenesis and Genomics Society (EMGS), New Orleans, Loisiana, United States + North America Environmental Mutagenesis and Genomics Society (EMGS), New Orleans, Loisiana, United States Javier Revollo @@ -241,32 +241,32 @@ There are [upcoming events](/events/) in five countries on three continents. Se October
12-14 Analyse avancée de séquences - Europe Bordeaux Bioinformatics Center, University Bordeaux Segalen, France + Europe Bordeaux Bioinformatics Center, University Bordeaux Segalen, France Email october 15 October Galaxy Admins Meetup - Around the World Online + Around the World Online Hans-Rudolf Hotz, Dave Clements October 19 Workshop: Variant detection using Galaxy - Australia QFAB, University of Queensland, St Lucia, Australia - Training offered by GTN Member Mark Crowe + Australia QFAB, University of Queensland, St Lucia, Australia + Training offered by GTN Member Mark Crowe October 28-29 Workshop: Extended RNA-Seq analysis - Australia QFAB, University of Queensland, St Lucia, Australia - Training offered by GTN Member Mark Crowe + Australia QFAB, University of Queensland, St Lucia, Australia + Training offered by GTN Member Mark Crowe October 28 - November 3 Computational & Comparative Genomics Course - North America Cold Spring Harbor Laboratory, New York, United States - Training offered by GTN Member James Taylor + North America Cold Spring Harbor Laboratory, New York, United States + Training offered by GTN Member James Taylor @@ -306,7 +306,7 @@ Got a Galaxy-related opening? Send it to outreach@galaxyproject.org and we'll pu
Workflow4metabolomics Galaxy server

-
Workflow4Metabolomics Sponsors +
Workflow4Metabolomics Sponsors
*Sponsors*
diff --git a/content/galaxy-updates/2015-10/index.md b/content/galaxy-updates/2015-10/index.md index c59f63bdca..38763cd2f1 100644 --- a/content/galaxy-updates/2015-10/index.md +++ b/content/galaxy-updates/2015-10/index.md @@ -204,38 +204,38 @@ There are [upcoming events](/events/) in 4 countries on 4 continents. See the [ October 1 Proteogenomics and Metaproteomics using the GalaxyP Platform - Asia CSIR-Institute of Genomics & Integrative Biology (IGIB), New Dehli, India + Asia CSIR-Institute of Genomics & Integrative Biology (IGIB), New Dehli, India Pratik Jagtap October 9 Introduction to Integrative Analysis with GenomeSpace Workshop - North America ASHG 2015, Baltimore, Maryland, United States + North America ASHG 2015, Baltimore, Maryland, United States GenomeSpace October
12-14 Analyse avancée de séquences - Europe Bordeaux Bioinformatics Center, University Bordeaux Segalen, France + Europe Bordeaux Bioinformatics Center, University Bordeaux Segalen, France Email October 15 October Galaxy Admins Meetup - Around the World Online + Around the World Online David Kovalic, Hans-Rudolf Hotz, Dave Clements October 28-29 Workshop: Extended RNA-Seq analysis - Australia QFAB, University of Queensland, St Lucia, Australia - Training offered by GTN Member Mark Crowe + Australia QFAB, University of Queensland, St Lucia, Australia + Training offered by GTN Member Mark Crowe October 28 - November 3 Computational & Comparative Genomics Course - North America Cold Spring Harbor Laboratory, New York, United States - Training offered by GTN Member James Taylor + North America Cold Spring Harbor Laboratory, New York, United States + Training offered by GTN Member James Taylor @@ -244,8 +244,8 @@ There are [upcoming events](/events/) in 4 countries on 4 continents. See the [ November 3 Galaxy for the Analysis of Very Large Biomedical Data Workshop - North America Festival of Genomics California, San Mateo, California, United States - Training offered by GTN Member Anton Nekrutenko, James Taylor + North America Festival of Genomics California, San Mateo, California, United States + Training offered by GTN Member Anton Nekrutenko, James Taylor Single-Cell Sequencing: Analysis & Visualization of Copy Number Variations Workshop @@ -254,19 +254,19 @@ There are [upcoming events](/events/) in 4 countries on 4 continents. See the [ November 15-16 Analyse de données RNA-seq sous l’environnement Galaxy - Europe PRABI, Lyon, France + Europe PRABI, Lyon, France
Training offered by GTN Member
Email November 17-18 Analyse de données RNA-seq sous l’environnement Galaxy - Europe PRABI, Lyon, France + Europe PRABI, Lyon, France
Training offered by GTN Member
Email November 19 Galaxy Day 2015
Soumissions à envoyer avant le 5 octobre
- Europe Institut Pasteur, Paris, France + Europe Institut Pasteur, Paris, France Email @@ -276,7 +276,7 @@ There are [upcoming events](/events/) in 4 countries on 4 continents. See the [ December
7-11 Galaxy and the Genomics Virtual Lab - Australia BioInfoSummer 2015, University of Sydney, NSW, Australia + Australia BioInfoSummer 2015, University of Sydney, NSW, Australia diff --git a/content/galaxy-updates/2015-11/index.md b/content/galaxy-updates/2015-11/index.md index 259050c425..d1c1f4b2a7 100644 --- a/content/galaxy-updates/2015-11/index.md +++ b/content/galaxy-updates/2015-11/index.md @@ -204,8 +204,8 @@ There are [upcoming events](/events/) on 3 continents in 4 countries, *and a ver November 3 Galaxy for the Analysis of Very Large Biomedical Data Workshop - North America Festival of Genomics California, San Mateo, California, United States - Training offered by GTN Member Dan Blankenberg, John Chilton + North America Festival of Genomics California, San Mateo, California, United States + Training offered by GTN Member Dan Blankenberg, John Chilton Common Workflow Language on Galaxy
Part of Portable Bioinformatics Workshop @@ -218,25 +218,25 @@ There are [upcoming events](/events/) on 3 continents in 4 countries, *and a ver November 12 BioTeam & UC Davis Webinar: Introduction to Genomics Data Analysis with Galaxy - Around the World Webinar - Open to all + Around the World Webinar - Open to all Email November 15-16 Analyse de données RNA-seq sous l’environnement Galaxy - Europe PRABI, Lyon, France + Europe PRABI, Lyon, France
Training offered by GTN Member
Email November 17-18 Analyse de données RNA-seq sous l’environnement Galaxy - Europe PRABI, Lyon, France + Europe PRABI, Lyon, France
Training offered by GTN Member
Email November 18 Hackathon Galaxy 2015
Register here
- Europe Institut Pasteur, Paris, France + Europe Institut Pasteur, Paris, France Email @@ -246,7 +246,7 @@ There are [upcoming events](/events/) on 3 continents in 4 countries, *and a ver November 30 - December 1 IUC Contribution Fest - Metagenomics Tools and Workflows - Around the World Online + Around the World Online /iuc/, John Chilton @@ -256,8 +256,8 @@ There are [upcoming events](/events/) on 3 continents in 4 countries, *and a ver December 3 RNA-Seq Analysis Using Galaxy - Australia University of Newcastle, Newcastle, NSW, Australia - Training offered by GTN Member Mark Crowe, Katherine Champ + Australia University of Newcastle, Newcastle, NSW, Australia + Training offered by GTN Member Mark Crowe, Katherine Champ December 4 @@ -266,7 +266,7 @@ There are [upcoming events](/events/) on 3 continents in 4 countries, *and a ver December
7-11 Galaxy and the Genomics Virtual Lab - Australia BioInfoSummer 2015, University of Sydney, NSW, Australia + Australia BioInfoSummer 2015, University of Sydney, NSW, Australia @@ -276,13 +276,13 @@ There are [upcoming events](/events/) on 3 continents in 4 countries, *and a ver January 8 Introduction to Galaxy Workshop - North America Arizona State University, Tempe, Arizona, United States - Training offered by GTN Member Nico Franz, Melissa A. Wilson Sayres, Anton Nekrutenko + North America Arizona State University, Tempe, Arizona, United States + Training offered by GTN Member Nico Franz, Melissa A. Wilson Sayres, Anton Nekrutenko January 9-13 TreeGenes: Enabling visualization and analysis in forest tree genomics - North America Plant and Animal Genome (PAG XXIV), San Diego, California, United States + North America Plant and Animal Genome (PAG XXIV), San Diego, California, United States Emily Grau @@ -292,7 +292,7 @@ There are [upcoming events](/events/) on 3 continents in 4 countries, *and a ver January 19 An introduction to clinical bioinformatics - Europe Festival of Genomics London, London, United Kingdom + Europe Festival of Genomics London, London, United Kingdom Ang Davies @@ -302,8 +302,8 @@ There are [upcoming events](/events/) on 3 continents in 4 countries, *and a ver February 20-23 (SW4) The Galaxy Platform for Multi-Omic Data Analysis and Informatics - North America ABRF 2016, Fort Lauderdale, Florida, United States - Training offered by GTN Member Pratik Jagtap, Tim Griffin, Dave Clements, Candace Guerrero, Getiria Onsongo + North America ABRF 2016, Fort Lauderdale, Florida, United States + Training offered by GTN Member Pratik Jagtap, Tim Griffin, Dave Clements, Candace Guerrero, Getiria Onsongo @@ -312,8 +312,8 @@ There are [upcoming events](/events/) on 3 continents in 4 countries, *and a ver June 25-29 2016 Galaxy Community Conference (GCC2016) - North America Indiana University, Bloomington, Indiana, United States - Training offered by GTN Member Organizers + North America Indiana University, Bloomington, Indiana, United States + Training offered by GTN Member Organizers diff --git a/content/galaxy-updates/2015-12/index.md b/content/galaxy-updates/2015-12/index.md index 9e8898e91f..fe32e71872 100644 --- a/content/galaxy-updates/2015-12/index.md +++ b/content/galaxy-updates/2015-12/index.md @@ -138,7 +138,7 @@ There are [many upcoming events](/events/) in the next few months. See the [Gal November 30 - December 1 IUC Contribution Fest - Metagenomics Tools and Workflows - Around the World Online + Around the World Online /iuc/, John Chilton @@ -148,8 +148,8 @@ There are [many upcoming events](/events/) in the next few months. See the [Gal December 3 RNA-Seq Analysis Using Galaxy - Australia University of Newcastle, Newcastle, NSW, Australia - Training offered by GTN Member Mark Crowe, Katherine Champ + Australia University of Newcastle, Newcastle, NSW, Australia + Training offered by GTN Member Mark Crowe, Katherine Champ December 4 @@ -158,7 +158,7 @@ There are [many upcoming events](/events/) in the next few months. See the [Gal December 18 Galaxy Session - Europe III Bioinformatics and Computational Biology Symposium, Barcelona, Spain + Europe III Bioinformatics and Computational Biology Symposium, Barcelona, Spain Email @@ -168,19 +168,19 @@ There are [many upcoming events](/events/) in the next few months. See the [Gal January 8 Introduction to Galaxy Workshop - North America Arizona State University, Tempe, Arizona, United States - Training offered by GTN Member Nico Franz, Melissa A. Wilson Sayres, Anton Nekrutenko + North America Arizona State University, Tempe, Arizona, United States + Training offered by GTN Member Nico Franz, Melissa A. Wilson Sayres, Anton Nekrutenko January 9-13 Plant and Animal Genome (PAG XXIV) - North America San Diego, California, United States + North America San Diego, California, United States See presenters January 19 An introduction to clinical bioinformatics - Europe Festival of Genomics London, London, United Kingdom + Europe Festival of Genomics London, London, United Kingdom Ang Davies @@ -190,20 +190,20 @@ There are [many upcoming events](/events/) in the next few months. See the [Gal February 11 BioTeam Galaxy Appliance: Simplify Hosting Your Own Galaxy (Software Demo) - North America AGBT, Orlando, Florida, United States + North America AGBT, Orlando, Florida, United States Anushka Brownley February 15-19 Analyse bioinformatique de séquences sous Galaxy - Europe Montpellier SupAgro, Montpellier, France - Training offered by GTN Member Yolande Olivier, Dominique Alhinc + Europe Montpellier SupAgro, Montpellier, France + Training offered by GTN Member Yolande Olivier, Dominique Alhinc February 20-23 (SW4) The Galaxy Platform for Multi-Omic Data Analysis and Informatics - North America ABRF 2016, Fort Lauderdale, Florida, United States - Training offered by GTN Member Pratik Jagtap, Tim Griffin, Dave Clements, Candace Guerrero, Getiria Onsongo + North America ABRF 2016, Fort Lauderdale, Florida, United States + Training offered by GTN Member Pratik Jagtap, Tim Griffin, Dave Clements, Candace Guerrero, Getiria Onsongo @@ -212,8 +212,8 @@ There are [many upcoming events](/events/) in the next few months. See the [Gal June 25-29 2016 Galaxy Community Conference (GCC2016) - North America Indiana University, Bloomington, Indiana, United States - Training offered by GTN Member Organizers + North America Indiana University, Bloomington, Indiana, United States + Training offered by GTN Member Organizers diff --git a/content/galaxy-updates/2016-01/index.md b/content/galaxy-updates/2016-01/index.md index 8eb4b4f449..398ef2c8ea 100644 --- a/content/galaxy-updates/2016-01/index.md +++ b/content/galaxy-updates/2016-01/index.md @@ -158,25 +158,25 @@ There are [many upcoming events](/events/) in the next few months. See the [Gal January 8 Introduction to Galaxy Workshop - North America Arizona State University, Tempe, Arizona, United States - Training offered by GTN Member Nico Franz, Melissa A. Wilson Sayres, Anton Nekrutenko + North America Arizona State University, Tempe, Arizona, United States + Training offered by GTN Member Nico Franz, Melissa A. Wilson Sayres, Anton Nekrutenko January 8, 15 Introduction to NGS data analysis - Europe VIB, Leuven, Belgium + Europe VIB, Leuven, Belgium Janick Mathys January 9-13 Plant and Animal Genome (PAG XXIV) - North America San Diego, California, United States + North America San Diego, California, United States See presenters January 19 An introduction to clinical bioinformatics - Europe Festival of Genomics London, London, United Kingdom + Europe Festival of Genomics London, London, United Kingdom Ang Davies @@ -192,20 +192,20 @@ There are [many upcoming events](/events/) in the next few months. See the [Gal February 11 BioTeam Galaxy Appliance: Simplify Hosting Your Own Galaxy (Software Demo) - North America AGBT, Orlando, Florida, United States + North America AGBT, Orlando, Florida, United States Anushka Brownley February 15-19 Analyse bioinformatique de séquences sous Galaxy - Europe Montpellier SupAgro, Montpellier, France - Training offered by GTN Member Yolande Olivier, Dominique Alhinc + Europe Montpellier SupAgro, Montpellier, France + Training offered by GTN Member Yolande Olivier, Dominique Alhinc February 20-23 (SW4) The Galaxy Platform for Multi-Omic Data Analysis and Informatics - North America ABRF 2016, Fort Lauderdale, Florida, United States - Training offered by GTN Member Pratik Jagtap, Tim Griffin, Dave Clements, Candace Guerrero, Getiria Onsongo + North America ABRF 2016, Fort Lauderdale, Florida, United States + Training offered by GTN Member Pratik Jagtap, Tim Griffin, Dave Clements, Candace Guerrero, Getiria Onsongo @@ -214,7 +214,7 @@ There are [many upcoming events](/events/) in the next few months. See the [Gal March 7-8 IUC Contribution Fest - RADSeq Tools and Workflows - Around the World Online + Around the World Online IUC @@ -224,8 +224,8 @@ There are [many upcoming events](/events/) in the next few months. See the [Gal June 25-29 2016 Galaxy Community Conference (GCC2016) - North America Indiana University, Bloomington, Indiana, United States - Training offered by GTN Member Organizers + North America Indiana University, Bloomington, Indiana, United States + Training offered by GTN Member Organizers diff --git a/content/galaxy-updates/2016-02/index.md b/content/galaxy-updates/2016-02/index.md index 39cb000b23..01848409c8 100644 --- a/content/galaxy-updates/2016-02/index.md +++ b/content/galaxy-updates/2016-02/index.md @@ -196,32 +196,32 @@ There are [many upcoming events](/events/) in the next few months. See the [Gal February 8-9 Initiation à l’environnement UNIX et à la plateforme GALAXY - Europe Montpellier OMICS Days 2016, Montpellier, France - Training offered by GTN Member Yvan Le Bras + Europe Montpellier OMICS Days 2016, Montpellier, France + Training offered by GTN Member Yvan Le Bras February 11 BioTeam Galaxy Appliance: Simplify Hosting Your Own Galaxy (Software Demo) - North America AGBT, Orlando, Florida, United States + North America AGBT, Orlando, Florida, United States Anushka Brownley February 15-19 Analyse bioinformatique de séquences sous Galaxy - Europe Montpellier SupAgro, Montpellier, France - Training offered by GTN Member Yolande Olivier, Dominique Alhinc + Europe Montpellier SupAgro, Montpellier, France + Training offered by GTN Member Yolande Olivier, Dominique Alhinc February 18 GalaxyAdmins Web Meetup - Around the World Online + Around the World Online Marius van den Beek, Nate Coraor,Hans-Rudolf Hotz, Dave Clements February 20-23 (SW4) The Galaxy Platform for Multi-Omic Data Analysis and Informatics - North America ABRF 2016, Fort Lauderdale, Florida, United States - Training offered by GTN Member Pratik Jagtap, Tim Griffin, Dave Clements, Candace Guerrero, Getiria Onsongo + North America ABRF 2016, Fort Lauderdale, Florida, United States + Training offered by GTN Member Pratik Jagtap, Tim Griffin, Dave Clements, Candace Guerrero, Getiria Onsongo @@ -230,25 +230,25 @@ There are [many upcoming events](/events/) in the next few months. See the [Gal March 7-8 IUC Contribution Fest - RADSeq Tools and Workflows - Around the World Online + Around the World Online IUC March 15 Initiation à l’utilisation de Galaxy - Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France + Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France Formation Migale March 16 Analyse primaire de données issues de séquenceurs nouvelle génération sous Galaxy - Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France + Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France Formation Migale March 17 Traitement bioinformatique des données RNA-Seq sous Galaxy - Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France + Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France Formation Migale @@ -258,7 +258,7 @@ There are [many upcoming events](/events/) in the next few months. See the [Gal April 6 Approaches for the Integration of Visual and Computational Analysis of Biomedical Data - North America BioIT World 2016, Boston, Massachusetts, United States + North America BioIT World 2016, Boston, Massachusetts, United States Nils Gehlenborg @@ -268,8 +268,8 @@ There are [many upcoming events](/events/) in the next few months. See the [Gal June 25-29 2016 Galaxy Community Conference (GCC2016) - North America Indiana University, Bloomington, Indiana, United States - Training offered by GTN Member Organizers + North America Indiana University, Bloomington, Indiana, United States + Training offered by GTN Member Organizers @@ -350,7 +350,7 @@ Interactive tours are a way to walk through Galaxy, following a set of steps to # Galaxy on Windows and OS X using Kitematic
- +
Galaxy has been available in Docker containers for a while now. Docker containers are an easy way to package software for installation on other systems. The [Docker Toolbox](https://www.docker.com/products/docker-toolbox) now includes [Kitematic](https://kitematic.com/), a GUI for running Docker containers on Windows and Mac OS X systems. Kitematic makes it easy to run any published Docker container on these systems. diff --git a/content/galaxy-updates/2016-03/index.md b/content/galaxy-updates/2016-03/index.md index 6f69ebc0e9..b38bfc0a18 100644 --- a/content/galaxy-updates/2016-03/index.md +++ b/content/galaxy-updates/2016-03/index.md @@ -250,25 +250,25 @@ There are [many upcoming events](/events/) in the next few months. See the [Gal March 7-8 IUC Contribution Fest - RADSeq Tools and Workflows - Around the World Online + Around the World Online IUC March 15 Initiation à l’utilisation de Galaxy - Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France + Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France Formation Migale March 16 Analyse primaire de données issues de séquenceurs nouvelle génération sous Galaxy - Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France + Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France Formation Migale March 17 Traitement bioinformatique des données RNA-Seq sous Galaxy - Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France + Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France Formation Migale @@ -284,13 +284,13 @@ There are [many upcoming events](/events/) in the next few months. See the [Gal April 6 Approaches for the Integration of Visual and Computational Analysis of Biomedical Data - North America BioIT World 2016, Boston, Massachusetts, United States + North America BioIT World 2016, Boston, Massachusetts, United States Nils Gehlenborg April 22-26 Workshop on Galaxy: Practical Course - North America SolBio International Conference 2016, Riviera Maya, México + North America SolBio International Conference 2016, Riviera Maya, México Oswaldo Trelles @@ -300,25 +300,25 @@ There are [many upcoming events](/events/) in the next few months. See the [Gal May 11-13 NGS & Cancer : Analyses RNA-Seq - Europe Paris, France + Europe Paris, France Cancéropôle Île-de-France May 23-24 Analyse statistique de données RNA-Seq sous Galaxy -Recherche des régions d'intérêt différentiellement exprimées - Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France + Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France Formation Migale May 30 Initiation à l’utilisation de Galaxy - Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France + Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France Formation Migale May 31 Analyse primaire de données issues de séquenceurs nouvelle génération sous Galaxy - Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France + Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France Formation Migale @@ -328,25 +328,25 @@ There are [many upcoming events](/events/) in the next few months. See the [Gal June 9-10 Informatics on High-throughput Sequencing Data - North America Montreal, Quebec, Canada - Training offered by GTN Member Francis Ouellette + North America Montreal, Quebec, Canada + Training offered by GTN Member Francis Ouellette June 13-17 Using Galaxy For Analysis of High Throughput Sequence Data - North America Davis, California, United States - Training offered by GTN Member UC Davis Bioinformatics Training Program + North America Davis, California, United States + Training offered by GTN Member UC Davis Bioinformatics Training Program June 25-29 2016 Galaxy Community Conference (GCC2016) - North America Indiana University, Bloomington, Indiana, United States - Training offered by GTN Member Organizers + North America Indiana University, Bloomington, Indiana, United States + Training offered by GTN Member Organizers June 30 - July 1 GMOD Meeting - North America Indiana University, Bloomington, Indiana, United States + North America Indiana University, Bloomington, Indiana, United States Scott Cain diff --git a/content/galaxy-updates/2016-04/index.md b/content/galaxy-updates/2016-04/index.md index f0f32cfe28..33164674c7 100644 --- a/content/galaxy-updates/2016-04/index.md +++ b/content/galaxy-updates/2016-04/index.md @@ -162,37 +162,37 @@ There are [many upcoming events](/events/) in the next few months. See the [Gal April 6 Approaches for the Integration of Visual and Computational Analysis of Biomedical Data - North America BioIT World 2016, Boston, Massachusetts, United States + North America BioIT World 2016, Boston, Massachusetts, United States Nils Gehlenborg April 6-7 Galaxy DevOps Workshop - Galaxy and Galaxy tools deployment strategies - Europe Galaxy DevOps Workshop 2016, Heidelberg, Germany - Training offered by GTN Member Björn Grüning + Europe Galaxy DevOps Workshop 2016, Heidelberg, Germany + Training offered by GTN Member Björn Grüning April 21 GalaxyAdmins Web Meetup - Around the World Online + Around the World Online Hans-Rudolf Hotz, Dave Clements April 22-26 Workshop on Galaxy: Practical Course - North America SolBio International Conference 2016, Riviera Maya, México + North America SolBio International Conference 2016, Riviera Maya, México Oswaldo Trelles April 26 NGS Bioinformatics Data Analysis Workshop - Europe NGS 2016 Glasgow, Glasgow, United Kingdom + Europe NGS 2016 Glasgow, Glasgow, United Kingdom Julian Augley, Graham Hamilton, David Meltzer, Mani Mudaliar April 28 Galaxy Workshop Tokyo 2016 - Asia RCAST, The University of Tokyo, Japan + Asia RCAST, The University of Tokyo, Japan Tazro Ohta, James Taylor @@ -202,31 +202,31 @@ There are [many upcoming events](/events/) in the next few months. See the [Gal May 11-13 NGS & Cancer : Analyses RNA-Seq - Europe Paris, France + Europe Paris, France Cancéropôle Île-de-France May 18-20 ELIXIR Technical Hackathon: Tools, Workflows and Workbenches - Europe Institut Pasteur, Paris, France + Europe Institut Pasteur, Paris, France Organisers May 23-24 Analyse statistique de données RNA-Seq sous Galaxy -Recherche des régions d'intérêt différentiellement exprimées - Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France + Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France Formation Migale May 30 Initiation à l’utilisation de Galaxy - Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France + Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France Formation Migale May 31 Analyse primaire de données issues de séquenceurs nouvelle génération sous Galaxy - Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France + Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France Formation Migale @@ -236,25 +236,25 @@ There are [many upcoming events](/events/) in the next few months. See the [Gal June 9-10 Informatics on High-throughput Sequencing Data - North America Montreal, Quebec, Canada - Training offered by GTN Member Francis Ouellette + North America Montreal, Quebec, Canada + Training offered by GTN Member Francis Ouellette June 13-17 Using Galaxy For Analysis of High Throughput Sequence Data - North America Davis, California, United States - Training offered by GTN Member UC Davis Bioinformatics Training Program + North America Davis, California, United States + Training offered by GTN Member UC Davis Bioinformatics Training Program June 25-29 2016 Galaxy Community Conference (GCC2016) - North America Indiana University, Bloomington, Indiana, United States - Training offered by GTN Member Organizers + North America Indiana University, Bloomington, Indiana, United States + Training offered by GTN Member Organizers June 30 - July 1 GMOD Meeting - North America Indiana University, Bloomington, Indiana, United States + North America Indiana University, Bloomington, Indiana, United States Scott Cain diff --git a/content/galaxy-updates/2016-05/index.md b/content/galaxy-updates/2016-05/index.md index 898af855f8..7fad8c063e 100644 --- a/content/galaxy-updates/2016-05/index.md +++ b/content/galaxy-updates/2016-05/index.md @@ -156,85 +156,85 @@ See the [Galaxy Events Google Calendar](http://bit.ly/gxycal) for details on oth May 5 De novo genome assembly using Genomics Virtual Lab Workshop - Australia University of Queensland, St Lucia, Australia - Training offered by GTN Member QFAB Training, Xin-Yi Chua, Mike Thang + Australia University of Queensland, St Lucia, Australia + Training offered by GTN Member QFAB Training, Xin-Yi Chua, Mike Thang May 6 Variant detection using Galaxy Workshop - Australia University of Queensland, St Lucia, Australia - Training offered by GTN Member QFAB Training + Australia University of Queensland, St Lucia, Australia + Training offered by GTN Member QFAB Training May 10-14 EDGY—Export of data from Galaxy to Yabi, automated workflow transfer to command line tools - North America The Biology of Genomes, Cold Spring Harbor Laboratory, New York, United States + North America The Biology of Genomes, Cold Spring Harbor Laboratory, New York, United States David Molik May 11-13 NGS & Cancer : Analyses RNA-Seq - Europe Paris, France + Europe Paris, France Cancéropôle Île-de-France May 12-13 RNA-Seq and DNA-Seq Cancer Analyses - Europe Rotterdam, The Netherlands - Training offered by GTN Member Youri Hoogstrate + Europe Rotterdam, The Netherlands + Training offered by GTN Member Youri Hoogstrate May 17 Galaxy First Step - Europe Part of Cycle d'aprentissage sous Galaxy, INRA, Auzeville, France - Training offered by GTN Member Sarah Maman + Europe Part of Cycle d'aprentissage sous Galaxy, INRA, Auzeville, France + Training offered by GTN Member Sarah Maman May 18-19 Galaxy: Reads alignment and SNP calling - Europe Part of Cycle d'aprentissage sous Galaxy, INRA, Auzeville, France - Training offered by GTN Member Philippe Bardou + Europe Part of Cycle d'aprentissage sous Galaxy, INRA, Auzeville, France + Training offered by GTN Member Philippe Bardou May 19-20 Galaxy : RNAseq alignment and transcripts assemblies - Europe Part of Cycle d'aprentissage sous Galaxy, INRA, Auzeville, France - Training offered by GTN Member Celine Noirot, Cédric Cabau + Europe Part of Cycle d'aprentissage sous Galaxy, INRA, Auzeville, France + Training offered by GTN Member Celine Noirot, Cédric Cabau May 18-20 ELIXIR Technical Hackathon: Tools, Workflows and Workbenches
Full
- Europe Institut Pasteur, Paris, France + Europe Institut Pasteur, Paris, France Organisers May 23-24 Analyse statistique de données RNA-Seq sous Galaxy -Recherche des régions d'intérêt différentiellement exprimées - Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France + Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France Formation Migale May 26 RNA-Seq Analysis Using Galaxy - Australia Children’s Medical Research Institute, Westmead, NSW, Australia + Australia Children’s Medical Research Institute, Westmead, NSW, Australia Katherine Champ May 27 Variant Detection using Galaxy - Australia Children’s Medical Research Institute, Westmead, NSW, Australia + Australia Children’s Medical Research Institute, Westmead, NSW, Australia Katherine Champ May 30 Initiation à l’utilisation de Galaxy - Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France + Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France Formation Migale May 31 Analyse primaire de données issues de séquenceurs nouvelle génération sous Galaxy - Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France + Europe Part of Le cycle "Bioinformatique par la pratique" 2016, Jouy-en-Josas, France Formation Migale @@ -243,37 +243,37 @@ See the [Galaxy Events Google Calendar](http://bit.ly/gxycal) for details on oth June 5-9 64th ASMS Conference on Mass Spectrometry and Allied Topics - North America San Antonio, Texas, United States - Training offered by GTN Member Presenters + North America San Antonio, Texas, United States + Training offered by GTN Member Presenters June 9-10 Informatics on High-throughput Sequencing Data - North America Montreal, Quebec, Canada - Training offered by GTN Member Francis Ouellette + North America Montreal, Quebec, Canada + Training offered by GTN Member Francis Ouellette June 13-17 Using Galaxy for Analysis of RNA-Seq and ChIP-Seq Data - North America Davis, California, United States - Training offered by GTN Member UC Davis Bioinformatics Training Program + North America Davis, California, United States + Training offered by GTN Member UC Davis Bioinformatics Training Program June 16 GalaxyAdmins Web Meetup - Around the World Online + Around the World Online Evan Bollig, JJ Johnson, Hans-Rudolf Hotz, Dave Clements June 25-29 2016 Galaxy Community Conference (GCC2016) - North America Indiana University, Bloomington, Indiana, United States - Training offered by GTN Member Organizers + North America Indiana University, Bloomington, Indiana, United States + Training offered by GTN Member Organizers June 30 - July 1 GMOD Meeting - North America Indiana University, Bloomington, Indiana, United States + North America Indiana University, Bloomington, Indiana, United States Scott Cain @@ -282,31 +282,31 @@ See the [Galaxy Events Google Calendar](http://bit.ly/gxycal) for details on oth July 4-8 An introduction to Galaxy with the NeCTAR Genomics Virtual Laboratory Workshop - Australia 2016 Winter School in Mathematical & Computational Biology, University of Queensland, Brisbane, Australia + Australia 2016 Winter School in Mathematical & Computational Biology, University of Queensland, Brisbane, Australia Igor Makunin, Derek Benson July 6-7 BOSC Codefest 2016 - North America Orlando, Florida, United States + North America Orlando, Florida, United States Brad Chapman July 8-9 BOSC 2016 - North America ISMB 2016, Orlando, Florida, United States + North America ISMB 2016, Orlando, Florida, United States July 8-12 ISMB 2016 - North America Orlando, Florida, United States + North America Orlando, Florida, United States July 13-17 The Allied Genetics Conference 2016 (TAGC) - North America Orlando, Florida, United States + North America Orlando, Florida, United States Dave Clements diff --git a/content/galaxy-updates/2016-06/index.md b/content/galaxy-updates/2016-06/index.md index 20dce54473..1ae08467c9 100644 --- a/content/galaxy-updates/2016-06/index.md +++ b/content/galaxy-updates/2016-06/index.md @@ -138,61 +138,61 @@ There are [a plentitude of Galaxy related events coming up](/events/). Here's wh June 5-9 64th ASMS Conference on Mass Spectrometry and Allied Topics - North America San Antonio, Texas, United States - Training offered by GTN Member Presenters + North America San Antonio, Texas, United States + Training offered by GTN Member Presenters June 7 Introduction to the GVL and Galaxy - Australia Melbourne, Australia - Training offered by GTN Member VLSCI + Australia Melbourne, Australia + Training offered by GTN Member VLSCI June 8 Variant Calling with Galaxy and the GVL for beginners - Australia Melbourne, Australia - Training offered by GTN Member VLSCI + Australia Melbourne, Australia + Training offered by GTN Member VLSCI June 9-10 Informatics on High-throughput Sequencing Data - North America Montreal, Quebec, Canada - Training offered by GTN Member Francis Ouellette + North America Montreal, Quebec, Canada + Training offered by GTN Member Francis Ouellette June 13-17 Using Galaxy for Analysis of RNA-Seq and ChIP-Seq Data - North America Davis, California, United States - Training offered by GTN Member UC Davis Bioinformatics Training Program + North America Davis, California, United States + Training offered by GTN Member UC Davis Bioinformatics Training Program June 14 RNA-Seq Differential Gene Expression Analysis using the GVL and Galaxy - Australia Melbourne, Australia - Training offered by GTN Member VLSCI + Australia Melbourne, Australia + Training offered by GTN Member VLSCI June 16 Galaxy in Production at the University of Minnesota - Around the World GalaxyAdmins Web Meetup, Online + Around the World GalaxyAdmins Web Meetup, Online Evan Bollig, JJ Johnson, Hans-Rudolf Hotz, Dave Clements June 20 Introduction to Galaxy Workshop - Europe University of Glasgow, Glasgow, United Kingdom + Europe University of Glasgow, Glasgow, United Kingdom David Meltzer June 25-29 2016 Galaxy Community Conference (GCC2016) - North America Indiana University, Bloomington, Indiana, United States - Training offered by GTN Member Organizers + North America Indiana University, Bloomington, Indiana, United States + Training offered by GTN Member Organizers June 30 - July 1 GMOD Meeting - North America Indiana University, Bloomington, Indiana, United States + North America Indiana University, Bloomington, Indiana, United States Scott Cain @@ -201,44 +201,44 @@ There are [a plentitude of Galaxy related events coming up](/events/). Here's wh July 4-8 An introduction to Galaxy with the NeCTAR Genomics Virtual Laboratory Workshop - Australia 2016 Winter School in Mathematical & Computational Biology, University of Queensland, Brisbane, Australia + Australia 2016 Winter School in Mathematical & Computational Biology, University of Queensland, Brisbane, Australia Igor Makunin, Derek Benson July 6-7 BOSC Codefest 2016 - North America Orlando, Florida, United States + North America Orlando, Florida, United States Brad Chapman July 8-9 BOSC 2016 - North America ISMB 2016, Orlando, Florida, United States + North America ISMB 2016, Orlando, Florida, United States See presenters July 8-12 ISMB 2016 - North America Orlando, Florida, United States + North America Orlando, Florida, United States See presenters July 13-17 An Introduction to Using Galaxy for Genetic Data Analysis - North America The Allied Genetics Conference 2016 (TAGC), Orlando, Florida, United States + North America The Allied Genetics Conference 2016 (TAGC), Orlando, Florida, United States Dave Clements July 15 Introduction to Galaxy Workshop - Europe University of Glasgow, Glasgow, United Kingdom + Europe University of Glasgow, Glasgow, United Kingdom David Meltzer July 21 Introduction to Galaxy - North America Cornell University, Ithaca, New York, United States - Training offered by GTN Member Dave Clements + North America Cornell University, Ithaca, New York, United States + Training offered by GTN Member Dave Clements @@ -246,20 +246,20 @@ There are [a plentitude of Galaxy related events coming up](/events/). Here's wh August 1-4 Integrating Ontological and Genomic Analysis with Galaxy Workshop - North America ICBO 2016, Corvallis, Oregon, United States - Training offered by GTN Member Dave Clements + North America ICBO 2016, Corvallis, Oregon, United States + Training offered by GTN Member Dave Clements August 12 Introduction to Galaxy Workshop - Europe University of Glasgow, Glasgow, United Kingdom + Europe University of Glasgow, Glasgow, United Kingdom David Meltzer August 29 - September 2 Using Galaxy for Analysis of RNA-Seq, Exome-Seq, and Variants - North America Davis, California, United States - Training offered by GTN Member UC Davis Bioinformatics Training Program + North America Davis, California, United States + Training offered by GTN Member UC Davis Bioinformatics Training Program diff --git a/content/galaxy-updates/2016-07/index.md b/content/galaxy-updates/2016-07/index.md index e591024d80..e1e5bbbc81 100644 --- a/content/galaxy-updates/2016-07/index.md +++ b/content/galaxy-updates/2016-07/index.md @@ -115,50 +115,50 @@ There are [a plentitude of Galaxy related events coming up](/events/). Here's wh July 4-8 An introduction to Galaxy with the NeCTAR Genomics Virtual Laboratory Workshop - Australia 2016 Winter School in Mathematical & Computational Biology, University of Queensland, Brisbane, Australia + Australia 2016 Winter School in Mathematical & Computational Biology, University of Queensland, Brisbane, Australia Igor Makunin, Derek Benson July 6-7 BOSC Codefest 2016 - North America Orlando, Florida, United States + North America Orlando, Florida, United States Brad Chapman July 8-9 BOSC 2016 - North America ISMB 2016, Orlando, Florida, United States + North America ISMB 2016, Orlando, Florida, United States See presenters July 8-12 ISMB 2016 - North America Orlando, Florida, United States + North America Orlando, Florida, United States See presenters July 13-17 An Introduction to Using Galaxy for Genetic Data Analysis - North America The Allied Genetics Conference 2016 (TAGC), Orlando, Florida, United States + North America The Allied Genetics Conference 2016 (TAGC), Orlando, Florida, United States Dave Clements July 15 Introduction to Galaxy Workshop
This workshop is full
- Europe University of Glasgow, Glasgow, United Kingdom + Europe University of Glasgow, Glasgow, United Kingdom David Meltzer July 19-20 Introduction to Galaxy - North America University of Rochester, Rochester, New York, United States - Training offered by GTN Member Dave Clements + North America University of Rochester, Rochester, New York, United States + Training offered by GTN Member Dave Clements July 21 Introduction to Galaxy - North America Cornell University, Ithaca, New York, United States - Training offered by GTN Member Dave Clements + North America Cornell University, Ithaca, New York, United States + Training offered by GTN Member Dave Clements @@ -166,32 +166,32 @@ There are [a plentitude of Galaxy related events coming up](/events/). Here's wh August 1-4 Integrating Ontological and Genomic Analysis with Galaxy Workshop - North America ICBO 2016, Corvallis, Oregon, United States - Training offered by GTN Member Dave Clements + North America ICBO 2016, Corvallis, Oregon, United States + Training offered by GTN Member Dave Clements August 9-10 Introduction to Galaxy Workflows - Around the World Workflows Workshop, Distributed - Training offered by GTN Member Dave Clements + Around the World Workflows Workshop, Distributed + Training offered by GTN Member Dave Clements August 12 Introduction to Galaxy Workshop - Europe University of Glasgow, Glasgow, United Kingdom + Europe University of Glasgow, Glasgow, United Kingdom David Meltzer August 18 GalaxyAdmins Web Meetup - Around the World Online + Around the World Online Hans-Rudolf Hotz, Dave Clements August 29 - September 2 Using Galaxy for Analysis of RNA-Seq, Exome-Seq, and Variants - North America Davis, California, United States - Training offered by GTN Member UC Davis Bioinformatics Training Program + North America Davis, California, United States + Training offered by GTN Member UC Davis Bioinformatics Training Program @@ -199,20 +199,20 @@ There are [a plentitude of Galaxy related events coming up](/events/). Here's wh September 3-7 Tutorial: Scientific workflows under Galaxy. Use case: multiple genome comparison - Europe European Conference on Computational Biology (ECCB 2016), The Hague, Netherlands + Europe European Conference on Computational Biology (ECCB 2016), The Hague, Netherlands Oswaldo Trelles Salazar September 12-16 Summer School 2016 in Metagenomics - Europe Institut Pasteur, Paris, France + Europe Institut Pasteur, Paris, France Contacts September 19-23 High Throughput Sequencing (HTS) Data Analyses for Scientists
This workshop is full
- Europe Freiburg, Germany - Training offered by GTN Member Contact + Europe Freiburg, Germany + Training offered by GTN Member Contact @@ -220,19 +220,19 @@ There are [a plentitude of Galaxy related events coming up](/events/). Here's wh October 18-20 Galaxy4Bioinformatics - Europe Lyon, France - Training offered by GTN Member Contacts + Europe Lyon, France + Training offered by GTN Member Contacts October 20 (third Swiss) Galaxy Workshop - Europe 2016 Swiss-German Galaxy Tour in Freiburg, Germany + Europe 2016 Swiss-German Galaxy Tour in Freiburg, Germany Hans-Rudolf Hotz and Bjoern Gruening October 21 (second German) Galaxy Developers Day - Europe 2016 Swiss-German Galaxy Tour in Freiburg, Germany + Europe 2016 Swiss-German Galaxy Tour in Freiburg, Germany Hans-Rudolf Hotz and Bjoern Gruening @@ -241,14 +241,14 @@ There are [a plentitude of Galaxy related events coming up](/events/). Here's wh November 7-8 Galaxy Admin Training: Introduction - North America Salt Lake City, Utah, United States - Training offered by GTN Member Galaxy Team + North America Salt Lake City, Utah, United States + Training offered by GTN Member Galaxy Team November 9-11 Galaxy Admin Training: Advanced - North America Salt Lake City, Utah, United States - Training offered by GTN Member Galaxy Team + North America Salt Lake City, Utah, United States + Training offered by GTN Member Galaxy Team 2017 @@ -256,8 +256,8 @@ There are [a plentitude of Galaxy related events coming up](/events/). Here's wh February 3-9 Galaxy Australasia Meeting (GAMe 2017) - Australia University of Melbourne, Victoria, Australia - Training offered by GTN Member Organisers + Australia University of Melbourne, Victoria, Australia + Training offered by GTN Member Organisers @@ -265,8 +265,8 @@ There are [a plentitude of Galaxy related events coming up](/events/). Here's wh June 26-30 2017 Galaxy Community Conference (GCC2017) - Europe Montpellier, France - Training offered by GTN Member Organisers + Europe Montpellier, France + Training offered by GTN Member Organisers diff --git a/content/galaxy-updates/2016-08/index.md b/content/galaxy-updates/2016-08/index.md index 5ae4260417..c8ab94d827 100644 --- a/content/galaxy-updates/2016-08/index.md +++ b/content/galaxy-updates/2016-08/index.md @@ -67,38 +67,38 @@ There are [a plentitude of Galaxy related events coming up](/events/). Here's wh August 1-4 Integrating Ontological and Genomic Analysis with Galaxy Workshop - North America ICBO 2016, Corvallis, Oregon, United States - Training offered by GTN Member Dave Clements + North America ICBO 2016, Corvallis, Oregon, United States + Training offered by GTN Member Dave Clements August 9-10 Introduction to Galaxy Workflows - Around the World Workflows Workshop, Distributed - Training offered by GTN Member Dave Clements + Around the World Workflows Workshop, Distributed + Training offered by GTN Member Dave Clements August 12 Introduction to Galaxy Workshop - Europe University of Glasgow, Glasgow, United Kingdom + Europe University of Glasgow, Glasgow, United Kingdom David Meltzer August 17 Galaxy Workshop - Australia St Lucia campus, University of Queensland, Australia + Australia St Lucia campus, University of Queensland, Australia Igor Makunin August 18 GalaxyAdmins Web Meetup - Around the World Online + Around the World Online Hans-Rudolf Hotz, Dave Clements August 29 - September 2 Using Galaxy for Analysis of RNA-Seq, Exome-Seq, and Variants - North America Davis, California, United States - Training offered by GTN Member UC Davis Bioinformatics Training Program + North America Davis, California, United States + Training offered by GTN Member UC Davis Bioinformatics Training Program @@ -106,32 +106,32 @@ There are [a plentitude of Galaxy related events coming up](/events/). Here's wh September 3-7 Tutorial: Scientific workflows under Galaxy. Use case: multiple genome comparison - Europe European Conference on Computational Biology (ECCB 2016), The Hague, Netherlands + Europe European Conference on Computational Biology (ECCB 2016), The Hague, Netherlands Oswaldo Trelles Salazar September 12-16 The Workflow4Metabolomics (W4M) online infrastructure for omics analysis with Galaxy - Europe Metabolomics Sardinian Scientific School: How to bridge metabolomics and genomics, Pula, Italy + Europe Metabolomics Sardinian Scientific School: How to bridge metabolomics and genomics, Pula, Italy E Thévenot September 12-16 Summer School 2016 in Metagenomics - Europe Institut Pasteur, Paris, France + Europe Institut Pasteur, Paris, France Contacts September 19-23 High Throughput Sequencing (HTS) Data Analyses for Scientists
This workshop is full
- Europe Freiburg, Germany - Training offered by GTN Member Contact + Europe Freiburg, Germany + Training offered by GTN Member Contact September 26-28 NGS Course: RNA-seq data analysis - Europe Leiden University Medical Center, The Netherlands - Training offered by GTN Member Peter-Bram ‘t Hoen, Jan Oosting, Celia van Gelder + Europe Leiden University Medical Center, The Netherlands + Training offered by GTN Member Peter-Bram ‘t Hoen, Jan Oosting, Celia van Gelder @@ -139,25 +139,25 @@ There are [a plentitude of Galaxy related events coming up](/events/). Here's wh October 10-13 Metagenomic: amplicon analysis - Europe INRA Auzeville, Auzeville, France - Training offered by GTN Member Sarah Maman + Europe INRA Auzeville, Auzeville, France + Training offered by GTN Member Sarah Maman October 18-20 Galaxy4Bioinformatics - Europe Lyon, France - Training offered by GTN Member Contacts + Europe Lyon, France + Training offered by GTN Member Contacts October 20 (third Swiss) Galaxy Workshop - Europe 2016 Swiss-German Galaxy Tour in Freiburg, Germany + Europe 2016 Swiss-German Galaxy Tour in Freiburg, Germany Hans-Rudolf Hotz and Bjoern Gruening October 21 (second German) Galaxy Developers Day - Europe 2016 Swiss-German Galaxy Tour in Freiburg, Germany + Europe 2016 Swiss-German Galaxy Tour in Freiburg, Germany Hans-Rudolf Hotz and Bjoern Gruening @@ -166,14 +166,14 @@ There are [a plentitude of Galaxy related events coming up](/events/). Here's wh November 7-8 Galaxy Admin Training: Introduction - North America Salt Lake City, Utah, United States - Training offered by GTN Member Galaxy Team + North America Salt Lake City, Utah, United States + Training offered by GTN Member Galaxy Team November 9-11 Galaxy Admin Training: Advanced - North America Salt Lake City, Utah, United States - Training offered by GTN Member Galaxy Team + North America Salt Lake City, Utah, United States + Training offered by GTN Member Galaxy Team 2017 @@ -181,8 +181,8 @@ There are [a plentitude of Galaxy related events coming up](/events/). Here's wh February 3-9 Galaxy Australasia Meeting (GAMe 2017) - Australia University of Melbourne, Victoria, Australia - Training offered by GTN Member Organisers + Australia University of Melbourne, Victoria, Australia + Training offered by GTN Member Organisers @@ -190,8 +190,8 @@ There are [a plentitude of Galaxy related events coming up](/events/). Here's wh June 26-30 2017 Galaxy Community Conference (GCC2017) - Europe Montpellier, France - Training offered by GTN Member Organisers + Europe Montpellier, France + Training offered by GTN Member Organisers diff --git a/content/galaxy-updates/2016-09/index.md b/content/galaxy-updates/2016-09/index.md index d2c839cb66..a719708d5e 100644 --- a/content/galaxy-updates/2016-09/index.md +++ b/content/galaxy-updates/2016-09/index.md @@ -86,43 +86,43 @@ There are [a plentitude of Galaxy related events coming up](/events/). Here's wh September 12-16 The Workflow4Metabolomics (W4M) online infrastructure for omics analysis with Galaxy - Europe Metabolomics Sardinian Scientific School: How to bridge metabolomics and genomics, Pula, Italy + Europe Metabolomics Sardinian Scientific School: How to bridge metabolomics and genomics, Pula, Italy E Thévenot September 12-16 Summer School 2016 in Metagenomics - Europe Institut Pasteur, Paris, France + Europe Institut Pasteur, Paris, France Contacts September 19-20 Exome analysis using Galaxy - Europe Milano, Italy - Training offered by GTN Member Paolo Uva, Gianmauro Cuccuru + Europe Milano, Italy + Training offered by GTN Member Paolo Uva, Gianmauro Cuccuru September 19-22 Streamlined analysis of duplex sequencing data with Du Novo - Europe Genome Informatics 2016, Hinxton, United Kingdom + Europe Genome Informatics 2016, Hinxton, United Kingdom Nick Stoler September 19-23 High Throughput Sequencing (HTS) Data Analyses for Scientists
This workshop is full
- Europe Freiburg, Germany - Training offered by GTN Member Contact + Europe Freiburg, Germany + Training offered by GTN Member Contact September 26-28 NGS Course: RNA-seq data analysis - Europe Leiden University Medical Center, The Netherlands - Training offered by GTN Member Peter-Bram ‘t Hoen, Jan Oosting, Celia van Gelder + Europe Leiden University Medical Center, The Netherlands + Training offered by GTN Member Peter-Bram ‘t Hoen, Jan Oosting, Celia van Gelder September 29 - October 1 GalaxyによるNGSデータ解析 (Galaxy NGS Data Analysis BoF) - Asia 第5回生命医薬情報学連合大会 (IIBMP 2016), Tokyo, Japan + Asia 第5回生命医薬情報学連合大会 (IIBMP 2016), Tokyo, Japan Ryota Yamanaka, Tazra Ohta @@ -131,7 +131,7 @@ There are [a plentitude of Galaxy related events coming up](/events/). Here's wh October 10 Omics Data Services Platform: Supporting bacterial pathogen multi omics analysis - Australia International Workshop on Science Gateways, Melbourne, Australia + Australia International Workshop on Science Gateways, Melbourne, Australia Andrew Lonie @@ -141,25 +141,25 @@ There are [a plentitude of Galaxy related events coming up](/events/). Here's wh October 10-13 Metagenomic: amplicon analysis - Europe INRA Auzeville, Auzeville, France - Training offered by GTN Member Sarah Maman + Europe INRA Auzeville, Auzeville, France + Training offered by GTN Member Sarah Maman October 18-20 Galaxy4Bioinformatics - Europe Lyon, France - Training offered by GTN Member Contacts + Europe Lyon, France + Training offered by GTN Member Contacts October 20 (third Swiss) Galaxy Workshop - Europe 2016 Swiss-German Galaxy Tour in Freiburg, Germany + Europe 2016 Swiss-German Galaxy Tour in Freiburg, Germany Hans-Rudolf Hotz and Bjoern Gruening October 21 (second German) Galaxy Developers Day - Europe 2016 Swiss-German Galaxy Tour in Freiburg, Germany + Europe 2016 Swiss-German Galaxy Tour in Freiburg, Germany Hans-Rudolf Hotz and Bjoern Gruening @@ -168,50 +168,50 @@ There are [a plentitude of Galaxy related events coming up](/events/). Here's wh November 7-8 Galaxy Admin Training: Introduction - North America Salt Lake City, Utah, United States - Training offered by GTN Member Galaxy Team + North America Salt Lake City, Utah, United States + Training offered by GTN Member Galaxy Team November 7-9 NGS & Cancer : Analyses ChIP-Seq - Europe Paris, France + Europe Paris, France Cancéropôle Île-de-France November 8-20 Advanced Sequencing Technologies & Applications
Application deadline is July 15
- North America Cold Spring Harbor Laboratory, New York, United States - Training offered by GTN Member Jeremy Goecks + North America Cold Spring Harbor Laboratory, New York, United States + Training offered by GTN Member Jeremy Goecks November 9-11 Galaxy Admin Training: Advanced - North America Salt Lake City, Utah, United States - Training offered by GTN Member Galaxy Team + North America Salt Lake City, Utah, United States + Training offered by GTN Member Galaxy Team November 15-16 Analyse de données RNA-seq sous l’environnement Galaxy - Europe PRABI, Lyon, France + Europe PRABI, Lyon, France Contact November 20-25 Ecole Bioinformatique AVIESAN - Europe Station Biologique, Roscoff, France - Training offered by GTN Member Email + Europe Station Biologique, Roscoff, France + Training offered by GTN Member Email November 21-23 Annotation of transposable elements - Europe URGI, INRA Versailles, France + Europe URGI, INRA Versailles, France Contact November 28 - December 2 Traitement des donnéesmétabolomiques sous Galaxy
Les pré-inscriptions sont ouvertes jusqu'au 15 juillet 2016
- Europe Station Biologique, Roscoff, France - Training offered by GTN Member Contact + Europe Station Biologique, Roscoff, France + Training offered by GTN Member Contact 2017 @@ -219,8 +219,8 @@ There are [a plentitude of Galaxy related events coming up](/events/). Here's wh February 3-9 Galaxy Australasia Meeting (GAMe 2017) - Australia University of Melbourne, Victoria, Australia - Training offered by GTN Member Organisers + Australia University of Melbourne, Victoria, Australia + Training offered by GTN Member Organisers @@ -228,8 +228,8 @@ There are [a plentitude of Galaxy related events coming up](/events/). Here's wh June 26-30 2017 Galaxy Community Conference (GCC2017) - Europe Montpellier, France - Training offered by GTN Member Organisers + Europe Montpellier, France + Training offered by GTN Member Organisers diff --git a/content/galaxy-updates/2016-10/index.md b/content/galaxy-updates/2016-10/index.md index b68131aa24..e89efba6a5 100644 --- a/content/galaxy-updates/2016-10/index.md +++ b/content/galaxy-updates/2016-10/index.md @@ -170,13 +170,13 @@ There are [a plentitude of Galaxy related events coming up](/events/) in the nex October 6-7 Galaxy Training Contribution Fest - Around the World Online + Around the World Online Björn Grüning October 10 Omics Data Services Platform: Supporting bacterial pathogen multi omics analysis - Australia International Workshop on Science Gateways, Melbourne, Australia + Australia International Workshop on Science Gateways, Melbourne, Australia Andrew Lonie @@ -186,49 +186,49 @@ There are [a plentitude of Galaxy related events coming up](/events/) in the nex October 10-13 Metagenomic: amplicon analysis
Registration closes 4 October
- Europe INRA Auzeville, Auzeville, France - Training offered by GTN Member Sarah Maman + Europe INRA Auzeville, Auzeville, France + Training offered by GTN Member Sarah Maman October 13 Galaxy Workshop - Europe Copenhagen, Denmark + Europe Copenhagen, Denmark Jose Maria (Txema) Gonzalez Izarzugaza October 18-20 Galaxy4Bioinformatics - Europe Lyon, France - Training offered by GTN Member Contacts + Europe Lyon, France + Training offered by GTN Member Contacts October 20 Genome Program Joint Workshop - Asia Kunsan National University, Gunsan, South Korea + Asia Kunsan National University, Gunsan, South Korea Anton Nekrutenko October 20-21 BioExcel: Workflow Training for Computational Biomolecular Research - Europe Barcelona Supercomputing Center, Barcelona, Spain + Europe Barcelona Supercomputing Center, Barcelona, Spain Antonio Miguel Espinosa Morales October 20 (third Swiss) Galaxy Workshop - Europe 2016 Swiss-German Galaxy Days in Freiburg, Germany + Europe 2016 Swiss-German Galaxy Days in Freiburg, Germany Hans-Rudolf Hotz and Bjoern Gruening October 21 (second German) Galaxy Developers Day - Europe 2016 Swiss-German Galaxy Days in Freiburg, Germany + Europe 2016 Swiss-German Galaxy Days in Freiburg, Germany Hans-Rudolf Hotz and Bjoern Gruening October 24-27 The Galaxy tool lifecycle supporting reproducibility in scientific research - Europe NETTAB 2016 / EMBNet Joint Meeting on Reproducibility in Bioinformatics, Rome, Italy + Europe NETTAB 2016 / EMBNet Joint Meeting on Reproducibility in Bioinformatics, Rome, Italy Dannon Baker, Björn Grüning @@ -237,56 +237,56 @@ There are [a plentitude of Galaxy related events coming up](/events/) in the nex November 2-3 Bioconda Contribution Fest - Around the World Online + Around the World Online Björn Grüning November 7-8 Galaxy Admin Training: Introduction - North America Salt Lake City, Utah, United States - Training offered by GTN Member Galaxy Team + North America Salt Lake City, Utah, United States + Training offered by GTN Member Galaxy Team November 7-9 NGS & Cancer : Analyses ChIP-Seq - Europe Paris, France + Europe Paris, France Cancéropôle Île-de-France November 8-20 Advanced Sequencing Technologies & Applications
Application deadline is July 15
- North America Cold Spring Harbor Laboratory, New York, United States - Training offered by GTN Member Jeremy Goecks + North America Cold Spring Harbor Laboratory, New York, United States + Training offered by GTN Member Jeremy Goecks November 9-11 Galaxy Admin Training: Advanced - North America Salt Lake City, Utah, United States - Training offered by GTN Member Galaxy Team + North America Salt Lake City, Utah, United States + Training offered by GTN Member Galaxy Team November 15-16 Analyse de données RNA-seq sous l’environnement Galaxy - Europe PRABI, Lyon, France + Europe PRABI, Lyon, France Contact November 20-25 Ecole Bioinformatique AVIESAN - Europe Station Biologique, Roscoff, France - Training offered by GTN Member Email + Europe Station Biologique, Roscoff, France + Training offered by GTN Member Email November 21-23 Annotation of transposable elements - Europe URGI, INRA Versailles, France + Europe URGI, INRA Versailles, France Contact November 28 - December 2 Traitement des donnéesmétabolomiques sous Galaxy
Les pré-inscriptions sont ouvertes jusqu'au 15 juillet 2016
- Europe Station Biologique, Roscoff, France - Training offered by GTN Member Contact + Europe Station Biologique, Roscoff, France + Training offered by GTN Member Contact 2017 @@ -303,8 +303,8 @@ There are [a plentitude of Galaxy related events coming up](/events/) in the nex February 3-9 Galaxy Australasia Meeting (GAMe 2017) - Australia University of Melbourne, Victoria, Australia - Training offered by GTN Member Organisers + Australia University of Melbourne, Victoria, Australia + Training offered by GTN Member Organisers @@ -312,8 +312,8 @@ There are [a plentitude of Galaxy related events coming up](/events/) in the nex June 26-30 2017 Galaxy Community Conference (GCC2017) - Europe Montpellier, France - Training offered by GTN Member Organisers + Europe Montpellier, France + Training offered by GTN Member Organisers diff --git a/content/galaxy-updates/2016-12/index.md b/content/galaxy-updates/2016-12/index.md index cfff32380f..cdf0af8c6a 100644 --- a/content/galaxy-updates/2016-12/index.md +++ b/content/galaxy-updates/2016-12/index.md @@ -104,15 +104,15 @@ There are [a plenitude of Galaxy related events coming up](/events/) in the next December 15 - Galaxy Training Materials: Community creation, curation, and use and The new Galaxy Hub: Community creation, curation, and use - Online Online + Galaxy Training Materials: Community creation, curation, and use and The new Galaxy Hub: Community creation, curation, and use + Online Online Björn Grüning, Bérénice Batut, Dannon Baker and Dave Clements December 15-16 Galaxy RNA-sequencing data analysis workshop Europe Freiburg, Germany - Training offered by GTN Member Freiburg Galaxy Team + Training offered by GTN Member Freiburg Galaxy Team 2017 @@ -127,7 +127,7 @@ There are [a plenitude of Galaxy related events coming up](/events/) in the next January 16-19 European Galaxy Developer Workshop
Europe
Strasbourg, France - Training offered by GTN Member Organisers + Training offered by GTN Member Organisers January 30 @@ -142,13 +142,13 @@ There are [a plenitude of Galaxy related events coming up](/events/) in the next February 3-9 Galaxy Australasia Meeting (GAMe 2017)
Australia
University of Melbourne, Victoria, Australia - Training offered by GTN Member Organisers + Training offered by GTN Member Organisers February 13-17 Galaxy Workshop on HTS data analysis for Scientists
Europe
Freiburg, Germany - Training offered by GTN Member Organisers + Training offered by GTN Member Organisers @@ -157,7 +157,7 @@ There are [a plenitude of Galaxy related events coming up](/events/) in the next June 26-30 2017 Galaxy Community Conference (GCC2017)
Europe
Montpellier, France - Training offered by GTN Member Organisers + Training offered by GTN Member Organisers diff --git a/content/galaxy-updates/2017-01/index.md b/content/galaxy-updates/2017-01/index.md index 7f2d42e74a..c0131061a7 100644 --- a/content/galaxy-updates/2017-01/index.md +++ b/content/galaxy-updates/2017-01/index.md @@ -72,7 +72,7 @@ There are [a plenitude of Galaxy related events coming up](/events/) in the next Galaxy @ Plant and Animal Genome (PAG 2017)   European Galaxy Developer Workshop   Galaxy Training at University of Aberdeen -Galaxy Australasia Meeting 2017 +Galaxy Australasia Meeting 2017
@@ -98,20 +98,20 @@ There are [a plenitude of Galaxy related events coming up](/events/) in the next January 16-19 European Galaxy Developer Workshop - Europe Strasbourg, France - Training offered by GTN Member Organisers + Europe Strasbourg, France + Training offered by GTN Member Organisers January 23 RNA Sequencing and Differential Expression - Europe University of Aberdeen, Scotland, United Kingdom -
Training offered by GTN Member
Sophie Shaw + Europe University of Aberdeen, Scotland, United Kingdom +
Training offered by GTN Member
Sophie Shaw January 24 Advanced RNA Sequencing (RNA-seq) Analysis - Europe University of Aberdeen, Scotland, United Kingdom -
Training offered by GTN Member
Sophie Shaw + Europe University of Aberdeen, Scotland, United Kingdom +
Training offered by GTN Member
Sophie Shaw January 30 @@ -126,7 +126,7 @@ There are [a plenitude of Galaxy related events coming up](/events/) in the next February 3-9 Galaxy Australasia Meeting (GAMe 2017) Australia University of Melbourne, Victoria, Australia - Training offered by GTN Member Organisers + Training offered by GTN Member Organisers February 6 @@ -138,7 +138,7 @@ There are [a plenitude of Galaxy related events coming up](/events/) in the next February 13-17 Galaxy Workshop on HTS data analysis for Scientists Europe Freiburg, Germany - Training offered by GTN Member Organisers + Training offered by GTN Member Organisers @@ -147,7 +147,7 @@ There are [a plenitude of Galaxy related events coming up](/events/) in the next March 25-28     The Galaxy platform for metaproteomic characterization of microbiomes North America ABRF 2017, San Diego, California, United States - Training offered by GTN Member Tim Griffin, Pratik Jagtap, James Johnson + Training offered by GTN Member Tim Griffin, Pratik Jagtap, James Johnson @@ -174,7 +174,7 @@ There are [a plenitude of Galaxy related events coming up](/events/) in the next June 26-30 2017 Galaxy Community Conference (GCC2017) Europe Montpellier, France - Training offered by GTN Member Organisers + Training offered by GTN Member Organisers diff --git a/content/galaxy-updates/2017-03/index.md b/content/galaxy-updates/2017-03/index.md index b2cf221b80..8c72c576b3 100644 --- a/content/galaxy-updates/2017-03/index.md +++ b/content/galaxy-updates/2017-03/index.md @@ -146,7 +146,7 @@ donnéesRNA-Seq sous Galaxy March 25-28     The Galaxy platform for metaproteomic characterization of microbiomes North America ABRF 2017, San Diego, California, United States - Training offered by GTN Member Tim Griffin, Pratik Jagtap, James Johnson + Training offered by GTN Member Tim Griffin, Pratik Jagtap, James Johnson March 27-30 @@ -182,7 +182,7 @@ donnéesRNA-Seq sous Galaxy May 29 - June 2 Workflow4Experimenters International Course Applications due Feb 18
Europe Pasteur Institute, Paris, France - Training offered by GTN MemberChristophe Caron + Training offered by GTN MemberChristophe Caron May 29 - June 2 @@ -203,7 +203,7 @@ donnéesRNA-Seq sous Galaxy June 26-30 2017 Galaxy Community Conference (GCC2017) Europe Montpellier, France - Training offered by GTN Member Organisers + Training offered by GTN Member Organisers diff --git a/content/galaxy-updates/2017-04/index.md b/content/galaxy-updates/2017-04/index.md index e09aabee30..0906cde893 100644 --- a/content/galaxy-updates/2017-04/index.md +++ b/content/galaxy-updates/2017-04/index.md @@ -94,13 +94,13 @@ There are [a plenitude of Galaxy related events coming up](/events/) in the next April 19th 2017 - NGS & Cancer : Analyses DNA-Seq [hub page] + NGS & Cancer : Analyses DNA-Seq [hub page] Cancerpole, Paris, Fance formateurs May 15th 2017 - Data Analysis Workshop [hub page] + Data Analysis Workshop [hub page] NGS 2017 Glasgow, Glasgow, United Kingdom Julian Augley, Graham Hamilton, David Meltzer and Mani Mudaliar @@ -118,13 +118,13 @@ There are [a plenitude of Galaxy related events coming up](/events/) in the next May 29th 2017 - Workflow4Experimenters International Course [hub page] + Workflow4Experimenters International Course [hub page] Pasteur Institute, Paris, France Training offered by GTN MemberChristophe Caron May 29th 2017 - Bioinformatics for Cancer Genomics [hub page] + Bioinformatics for Cancer Genomics [hub page] Toronto, Ontario, Canada organizers @@ -148,7 +148,7 @@ There are [a plenitude of Galaxy related events coming up](/events/) in the next June 26th 2017 - 2017 Galaxy Community Conference (GCC2017) [hub page] + 2017 Galaxy Community Conference (GCC2017) [hub page] Montpellier, Fance Training offered by GTN MemberGalaxy community @@ -166,7 +166,7 @@ There are [a plenitude of Galaxy related events coming up](/events/) in the next September 1st 2017 - The Galaxy Bioinformatics Platform: learning to use Galaxy for RNA-seq analysis [hub page] + The Galaxy Bioinformatics Platform: learning to use Galaxy for RNA-seq analysis [hub page] Genome 10K and Genome Science, Earlham Institute, Norwich, United Kingdom Training offered by GTN Member diff --git a/content/galaxy-updates/2017-05/index.md b/content/galaxy-updates/2017-05/index.md index 97884d7093..486be3be3c 100644 --- a/content/galaxy-updates/2017-05/index.md +++ b/content/galaxy-updates/2017-05/index.md @@ -448,7 +448,7 @@ Other Galaxy packages that haven't had a release in the past four months can be # Other News -
Guardians of the Galaxy Workflow
+
Guardians of the Galaxy Workflow
* [Guardians of the Galaxy Workflow](http://gigasciencejournal.com/blog/guardians-of-the-galaxy-workflow/) * A nice writeup from [Scott Edmunds](http://gigasciencejournal.com/blog/author/scottedmunds/) about the [*GigaScience* Galaxy Series](https://academic.oup.com/gigascience/pages/galaxy_series_data_intensive_reproducible_research) (now on it's 12th paper) and GCC2017. *[GigaScience](https://academic.oup.com/gigascience)* is a returning GCC sponsor this year and submissions relating to talks and posters at GCC2017 will be eligible for a continuing 15% discount. diff --git a/content/galaxy-updates/2018-08/index.md b/content/galaxy-updates/2018-08/index.md index f61fbf5fd3..609d41ae28 100644 --- a/content/galaxy-updates/2018-08/index.md +++ b/content/galaxy-updates/2018-08/index.md @@ -124,7 +124,7 @@ These and [other Galaxy related events](/events/) are coming up in the next few "@type": "Event", "name": "RNA-Seq analysis using Galaxy","url": "https://qfab.org/workshops/rna-seq-analysis-using-galaxy-7-8-august-2018", "duration": "P2D", "location": { "@type": "Place", - "address": "QFAB, St Lucia, Queensland, Australia", "url": "https://qfab.org/" }, "image": "/src/images/logos/QFABLogo.png","eventType": "workshops and courses","contact": { + "address": "QFAB, St Lucia, Queensland, Australia", "url": "https://qfab.org/" }, "image": "/images/logos/QFABLogo.png","eventType": "workshops and courses","contact": { "@type": "person", "name": "training@qfab.org" },"startDate": "2018-08-07" @@ -172,7 +172,7 @@ These and [other Galaxy related events](/events/) are coming up in the next few "@type": "Event", "name": "6th Galaxy high-throughput sequencing (HTS) data analysis workshop","url": "/events/2018-09-denbi-hts", "duration": "P5D", "location": { "@type": "Place", - "address": "University of Freiburg, Freiburg Germany" }, "image": "/src/images/logos/deNBILogo.png","eventType": "workshops and courses","contact": { + "address": "University of Freiburg, Freiburg Germany" }, "image": "/images/logos/deNBILogo.png","eventType": "workshops and courses","contact": { "@type": "person", "name": "Freiburg Galaxy Team" },"startDate": "2018-09-17" @@ -180,7 +180,7 @@ These and [other Galaxy related events](/events/) are coming up in the next few "@type": "Event", "name": "RNA-Seq analysis using Galaxy","url": "https://qfab.org/workshops/rna-seq-analysis-using-galaxy-18-19-september-2018", "duration": "P2D", "location": { "@type": "Place", - "address": "QFAB, St Lucia, Queensland, Australia", "url": "https://qfab.org/" }, "image": "/src/images/logos/QFABLogo.png","eventType": "workshops and courses","contact": { + "address": "QFAB, St Lucia, Queensland, Australia", "url": "https://qfab.org/" }, "image": "/images/logos/QFABLogo.png","eventType": "workshops and courses","contact": { "@type": "person", "name": "training@qfab.org" },"startDate": "2018-09-18" @@ -252,7 +252,7 @@ These and [other Galaxy related events](/events/) are coming up in the next few "@type": "Event", "name": "BioHackathon 2018 Paris","url": "/events/2018-11-biohackathon", "duration": "P5D", "location": { "@type": "Place", - "address": "Campus des Berges de Seine, Paris, France", "url": "https://www.chateauform.com/fr/maison/les-berges-de-seine/" }, "image": "/src/events/2018-11-biohackathon/biohack2018.png","contact": { + "address": "Campus des Berges de Seine, Paris, France", "url": "https://www.chateauform.com/fr/maison/les-berges-de-seine/" }, "image": "/events/2018-11-biohackathon/biohack2018.png","contact": { "@type": "person", "name": "Bérénice Batut, Hervé Ménager" },"startDate": "2018-11-12" @@ -260,7 +260,7 @@ These and [other Galaxy related events](/events/) are coming up in the next few "@type": "Event", "name": "Analyse des données RNA-Seq sous l'environnement Galaxy","url": "https://www.biosciencesco.fr/formations/bio-informatique/analyse-des-donnees-rna-seq-sous-lenvironnement-galaxy/", "duration": "P3D", "location": { "@type": "Place", - "address": "Lyon, France" }, "image": "/src/images/logos/biosciences-and-co.png","eventType": "workshops and courses","contact": { + "address": "Lyon, France" }, "image": "/images/logos/biosciences-and-co.png","eventType": "workshops and courses","contact": { "@type": "person", "name": "contact@biosciencesco.fr" },"startDate": "2018-11-14" @@ -268,7 +268,7 @@ These and [other Galaxy related events](/events/) are coming up in the next few "@type": "Event", "name": "European Galaxy Days","url": "/events/2018-europe-dev", "duration": "P2D", "location": { "@type": "Place", - "address": "Freiburg, Germany" }, "image": "/src/events/2018-europe-dev/2018-europe-logo.small.png","contact": { + "address": "Freiburg, Germany" }, "image": "/events/2018-europe-dev/2018-europe-logo.small.png","contact": { "@type": "person", "name": "Hans-Rudolf Hotz, Björn Grüning, Jean-François Dufayard" },"startDate": "2018-11-19" diff --git a/content/images/galaxy-logos/index.md b/content/images/galaxy-logos/index.md index f564552eed..9ef453d8ca 100644 --- a/content/images/galaxy-logos/index.md +++ b/content/images/galaxy-logos/index.md @@ -85,43 +85,43 @@ The fonts used in the logos are Verdana Bold and Exo-ExtraLight * White background, 500x102 pixels - + ## CloudMan * White background, 842x231 pixels - + ## Planemo * Transparent background - + ## Pulsar * Transparent background - + ## Starforge * Transparent background - + ## GalaxyAdmins * 1781x742 pixels - + ## Galaxy News * Rectangular, 1600x682 pixels - + ## Galactic Blog @@ -197,15 +197,15 @@ The fonts used in the logos are Verdana Bold and Exo-ExtraLight * Logo, full text, 1600x670 pixels - + * Logo, just G, 679x429 pixels - + ## Help.GalaxyProject.org * Logo, full text, transparent background, 5081x701 pixels - + diff --git a/content/jxtx/foundation/index.md b/content/jxtx/foundation/index.md index 180ba222b7..fa87476bd9 100644 --- a/content/jxtx/foundation/index.md +++ b/content/jxtx/foundation/index.md @@ -22,8 +22,8 @@ The JXTX Foundation's first activity is to sponsor 10 graduate students to atten * **[Anoushka Joglekar: Making Connections via the JXTX Foundation](/news/2020-11-jxtx-joglekar/)**, November 24, 2020 * **[David Twesigomwe on the impact of the JXTX Foundation](/news/2020-11-jxtx-twesigomwe/)**, November 20, 2020 * **[JXTX Foundation Awards First Ten Scholarships](/news/2020-10-jxtx-awardees/)**, October 23, 2020 -* **[Call for Scholarship Applications for Biological Data Science 2020](/news/2020-07-bds-scholarships/index.md)**, July 8, 2020 -* **[The James Taylor Foundation](/news/2020-05-jtech/index.md)**, May 7, 2020 +* **[Call for Scholarship Applications for Biological Data Science 2020](/news/2020-07-bds-scholarships/)**, July 8, 2020 +* **[The James Taylor Foundation](/news/2020-05-jtech/)**, May 7, 2020
diff --git a/content/learn/datatypes/index.md b/content/learn/datatypes/index.md index 70d176ff3f..043dbf5e97 100644 --- a/content/learn/datatypes/index.md +++ b/content/learn/datatypes/index.md @@ -15,7 +15,7 @@ tool groups: **Convert Formats**, **SAM Tools**, and **NGS: QC and manipulation**, or perform a search in the top left Tool Search box. 2. With the **Edit Attributes** form, reached by clicking on the pencil icon -/src/images/icons/pencil.png inside of a +/images/icons/pencil.png inside of a [dataset](/learn/managing-datasets) box in the history. **Tool developers**: please see [admin/datatypes](/admin/datatypes) for diff --git a/content/learn/share/index.md b/content/learn/share/index.md index 6ebe550c70..4e7ac78b3c 100644 --- a/content/learn/share/index.md +++ b/content/learn/share/index.md @@ -26,7 +26,7 @@ On the form, fine the section titled 'Sharing with Specific Users'. To share wit On the form, find the section titled 'Making _Item-type_ Accessible via Link and Publishing It.' The buttons in this section enable you to make an item accessible via link and/or publish it. Items shared with the generated _web link_ can be viewed and imported (copied) by anyone that knows the link. * **[Galaxy Main](http://usegalaxy.org)**: Anonymous (unregistered account) use is [active for many functions](/main/#user-data-and-job-quotas). - * **[Other public/private servers](/use/index.md)**: If a registered account is required, a prompt to register first will come up. + * **[Other public/private servers](/use/)**: If a registered account is required, a prompt to register first will come up. Sharing items with a _web link_ is especially useful if you don't want to require that the person you're sharing with have a Galaxy account or be logged into Galaxy (when that Galaxy server permits anonymous access). You can change the text of an item's link by clicking on the pencil next to the link and typing in new text. diff --git a/content/news/2013-03-galaxy-admins/index.md b/content/news/2013-03-galaxy-admins/index.md index ea9878038a..569b7534b0 100644 --- a/content/news/2013-03-galaxy-admins/index.md +++ b/content/news/2013-03-galaxy-admins/index.md @@ -23,7 +23,7 @@ The [next meeting](/community/galaxy-admins/meetups/2013-03-20/) of the [GalaxyA Presenters - Hailiang "Leon" Mei
There will also be a Galaxy Project Update from Dan Blankenberg of the Galaxy Team + Hailiang "Leon" Mei
There will also be a Galaxy Project Update from Dan Blankenberg of the Galaxy Team Links diff --git a/content/news/2017-03-galaxy-update/index.md b/content/news/2017-03-galaxy-update/index.md index 1e47d3f982..4a996f21b6 100644 --- a/content/news/2017-03-galaxy-update/index.md +++ b/content/news/2017-03-galaxy-update/index.md @@ -4,7 +4,7 @@ tease: 'GCC2017 + new events, papers, jobs, servers, releases, ...' date: '2017-03-07' ---
Galaxy News
-2017 Galaxy Community Conference (GCC2017) +2017 Galaxy Community Conference (GCC2017)
The [March 2017 Galaxy News](/galaxy-updates/2017-03/) is out! diff --git a/content/news/2017-04-galaxy-update/index.md b/content/news/2017-04-galaxy-update/index.md index 05621e9747..b95b09f40b 100644 --- a/content/news/2017-04-galaxy-update/index.md +++ b/content/news/2017-04-galaxy-update/index.md @@ -4,7 +4,7 @@ tease: 'GCC2017 + new events, papers, jobs, servers, releases, and a milestone' date: '2017-04-04' ---
Galaxy News
-2017 Galaxy Community Conference (GCC2017) +2017 Galaxy Community Conference (GCC2017)
The [April 2017 Galaxy News](/galaxy-updates/2017-04/) is out! diff --git a/content/news/2017-05-galaxy-update/index.md b/content/news/2017-05-galaxy-update/index.md index 23658c2a17..58c6b63a78 100644 --- a/content/news/2017-05-galaxy-update/index.md +++ b/content/news/2017-05-galaxy-update/index.md @@ -4,7 +4,7 @@ tease: 'GCC2017 deadlines, ISMB/ECCB Tutorial, and lots of new stuff' date: '2017-05-02' ---
Galaxy News
-2017 Galaxy Community Conference (GCC2017) +2017 Galaxy Community Conference (GCC2017)
The [May 2017 Galaxy News](/galaxy-updates/2017-05/) is out! diff --git a/content/news/2017-06-galaxy-update/index.md b/content/news/2017-06-galaxy-update/index.md index 35459dca1a..9a53d0b12e 100644 --- a/content/news/2017-06-galaxy-update/index.md +++ b/content/news/2017-06-galaxy-update/index.md @@ -4,7 +4,7 @@ tease: 'GCC2017 is almost here (keynotes, BoFs, lightning, Hack the Universe!, . date: '2017-06-06' ---
Galaxy News
-2017 Galaxy Community Conference (GCC2017) +2017 Galaxy Community Conference (GCC2017)
The [June 2017 Galaxy News](/galaxy-updates/2017-06/) is out! diff --git a/content/news/2017-08-galaxy-update/index.md b/content/news/2017-08-galaxy-update/index.md index 3af781238e..b531443ffc 100644 --- a/content/news/2017-08-galaxy-update/index.md +++ b/content/news/2017-08-galaxy-update/index.md @@ -6,7 +6,7 @@ date: '2017-08-01'
[Galaxy News](/galaxy-updates/2017-08/)

[GCC2018: Save these dates](/galaxy-updates/2017-08/#gcc2018-portland-oregon-united-states-june-25-30)
-[2017 Galaxy Community Conference (GCC2017)](/galaxy-updates/2017-08/#gcc2017-is-done-) +[2017 Galaxy Community Conference (GCC2017)](/galaxy-updates/2017-08/#gcc2017-is-done-)
The [August 2017 Galaxy News](/galaxy-updates/2017-08/) is out! diff --git a/content/news/2017-11-oslo-admin-reg/index.md b/content/news/2017-11-oslo-admin-reg/index.md index 63cbea9b97..b2ff4a7493 100644 --- a/content/news/2017-11-oslo-admin-reg/index.md +++ b/content/news/2017-11-oslo-admin-reg/index.md @@ -24,5 +24,5 @@ Instructors * [Björn Grüning](https://github.com/bgruening) ([Elixir Galaxy WG](https://www.elixir-europe.org/about/groups/galaxy-wg), [Elixir Germany](https://www.elixir-europe.org/about-us/who-we-are/nodes/germany), [University of Freiburg](https://www.uni-freiburg.de/?set_language=en)) * [Marius van den Beek](https://github.com/mvdbeek) ([Elixir Galaxy WG](https://www.elixir-europe.org/about/groups/galaxy-wg), [Institute Curie](https://science.institut-curie.org/), France) * [Nicola Soranzo](http://www.earlham.ac.uk/nicola-soranzo) ([Elixir Galaxy WG](https://www.elixir-europe.org/about/groups/galaxy-wg), [Earlham Institute](http://www.earlham.ac.uk/), UK) -* [Enis Afgan](/people/enis-afgan/) ([Galaxy Project](/src/), [Johns Hopkins University](https://jhu.edu/), USA) +* [Enis Afgan](/people/enis-afgan/) ([Galaxy Project](/), [Johns Hopkins University](https://jhu.edu/), USA) * [Abdulrahman Azab](http://www.usit.uio.no/om/organisasjon/itf/ft/ansatte/azab/index.html) ([Elixir Norway](https://www.elixir-europe.org/about-us/who-we-are/nodes/norway), [USIT](http://www.usit.uio.no/), [University of Oslo](http://www.uio.no/), Norway) diff --git a/content/news/2018-02-galaxy-update/index.md b/content/news/2018-02-galaxy-update/index.md index 2a58fe5b22..b169535c32 100644 --- a/content/news/2018-02-galaxy-update/index.md +++ b/content/news/2018-02-galaxy-update/index.md @@ -9,7 +9,7 @@ The [February 2018 Galaxy News](/galaxy-updates/2018-02/) is out! * [Events](/galaxy-updates/2018-02/#events) * [**GCCBOSC 2018 training topic voting ends tomorrow**](/galaxy-updates/2018-02/#gccbosc-2018-training-topic-voting-closes-jan-31) - * [GCCBOSC Sponsorships](/galaxy-updates/2018-02/#index.mdgccbosc-2018-sponsors): highlighting *[PeerJ](/galaxy-updates/2018-02/#peerj)* and [call for sponsors](/galaxy-updates/2018-02/#call-for-sponsors) + * [GCCBOSC Sponsorships](/galaxy-updates/2018-02/#gccbosc-2018-sponsors): highlighting *[PeerJ](/galaxy-updates/2018-02/#peerj)* and [call for sponsors](/galaxy-updates/2018-02/#call-for-sponsors) * *Continental* community meetings in [**Europe** (March, Freiburg)](/galaxy-updates/2018-02/#elixir-galaxy-community-kickoff-and-meeting-march-freiburg) and [**Africa** (April, Cape Town)](/galaxy-updates/2018-02/#galaxy-africa-april-cape-town) * The [Galaxy Administrators Course](/galaxy-updates/2018-02/#galaxy-administrators-course-report) in Oslo is done, and training material and a preview of 18.01 release from the course are now online. * [Blog post: Galaxy R Markdown Tools](/galaxy-updates/2018-02/#new-galactic-blog-entry-galaxy-r-markdown-tools) diff --git a/content/news/2020-05-galaxy-update/index.md b/content/news/2020-05-galaxy-update/index.md index a3fe635f3f..004c0a423c 100644 --- a/content/news/2020-05-galaxy-update/index.md +++ b/content/news/2020-05-galaxy-update/index.md @@ -326,7 +326,7 @@ The CLIMB project (Cloud Infrastructure for Microbial Bioinformatics) has been [
-
[CoralSNP](/use/coral-snp/index.md)
+
[CoralSNP](/use/coral-snp/)
Coral! diff --git a/content/news/2020-11-galaxy-update/index.md b/content/news/2020-11-galaxy-update/index.md index 86416b014d..6597007bee 100644 --- a/content/news/2020-11-galaxy-update/index.md +++ b/content/news/2020-11-galaxy-update/index.md @@ -634,7 +634,7 @@ It provides realtime XML validation, code completion, help/documentation and oth The Galaxy Tools Visual Studio Code extension that uses the Galaxy Language Server can be downloaded from the [Open VSX Registry](https://open-vsx.org/extension/davelopez/galaxy-tools) and the [Visual Studio Marketplace](https://marketplace.visualstudio.com/items?itemName=davelopez.galaxy-tools). -Galaxy Language Server +Galaxy Language Server
diff --git a/content/news/2020-12-galaxy-update/index.md b/content/news/2020-12-galaxy-update/index.md index d2bfad1dfe..0b9f1cb1b0 100644 --- a/content/news/2020-12-galaxy-update/index.md +++ b/content/news/2020-12-galaxy-update/index.md @@ -571,7 +571,7 @@ Features: [ELIXIR Belgium](https://www.elixir-belgium.org/), in collaboration with the European Galaxy project (de.NBI) and the [European COVID-19 Data Platform](https://www.covid19dataportal.org/), have developed a tool to simplify the submission of viral sequencing data to the [European Nucleotide Archive (ENA)](https://www.ebi.ac.uk/ena/browser/home), an ELIXIR Core Data Resource providing open access to nucleotide sequences. The new submission tool offers an easy-to-use interface, guides researchers through the submission process and verifies the data format and description. Read more in the [official ELIXIR press release](https://elixir-europe.org/news/ENA-new-tool-COVID-19-data). -ENA submission tool +ENA submission tool
@@ -584,7 +584,7 @@ Good news for the imaging community! The [IDR Download tool](https://usegalaxy.e This is an important step towards the accessibility of bioimage data. Now, images stored in local OMERO databases that are not publicly available are accessible from either public or private Galaxy instances. Imaging facilities that are running their local instance and want to perform image analysis in Galaxy can directly benefit from this new feature. -OMERO upload tool +OMERO upload tool
@@ -621,7 +621,7 @@ Science](https://chanzuckerberg.com/rfa/essential-open-source-software-for-scien David, Anoushka, Sumaira, and Georgia
JXTX Foundation Impact
-The [JXTX Foundation](/srcjxtx/foundation/index.md) sponsored [10 graduate students](/news/2020-10-jxtx-awardees/) to attend the [2020 Biological Data Science Conference at Cold Spring Harbor Laboratory](https://meetings.cshl.edu/meetings.aspx?meet=DATA&year=20). The scholarships included connecting the recipients with prominent mentors in the field. Here what the awardees have to say about this experience: +The [JXTX Foundation](/srcjxtx/foundation/) sponsored [10 graduate students](/news/2020-10-jxtx-awardees/) to attend the [2020 Biological Data Science Conference at Cold Spring Harbor Laboratory](https://meetings.cshl.edu/meetings.aspx?meet=DATA&year=20). The scholarships included connecting the recipients with prominent mentors in the field. Here what the awardees have to say about this experience: * [David Twesigomwe on the impact of the JXTX Foundation](/news/2020-11-jxtx-twesigomwe/) * [Anoushka Joglekar: Making Connections via the JXTX Foundation](/news/2020-11-jxtx-joglekar/) diff --git a/content/news/2021-09-galaxy-update/index.md b/content/news/2021-09-galaxy-update/index.md index 16f6d54c30..9bae213dd4 100644 --- a/content/news/2021-09-galaxy-update/index.md +++ b/content/news/2021-09-galaxy-update/index.md @@ -101,7 +101,7 @@ of Galaxy have made their rounds in the scientific communities. The New Galaxy Community Hub Implementation
-You may not have noticed, but things have changed a lot in the Galaxy Community Hub. We are happy to unveil the new Galaxy Community Hub. This is a ground-up rewrite of the back-end for the site you're reading right now, with Gridsome replacing Metalsmith. A complete site restructure, and federation of Galaxy community sites is coming. [Read more](/blog/2021-09-hub2/index.md). +You may not have noticed, but things have changed a lot in the Galaxy Community Hub. We are happy to unveil the new Galaxy Community Hub. This is a ground-up rewrite of the back-end for the site you're reading right now, with Gridsome replacing Metalsmith. A complete site restructure, and federation of Galaxy community sites is coming. [Read more](/blog/2021-09-hub2/).
@@ -151,11 +151,11 @@ The ELIXIR Galaxy Community has updated the ELIXIR website including the goals w
-[Galaxy Career Center](/careers/index.md) +[Galaxy Career Center](/careers/)
-The [Galaxy Career Center](/careers/index.md) lists any open Galaxy related positions that we know about. Currently there are openings at +The [Galaxy Career Center](/careers/) lists any open Galaxy related positions that we know about. Currently there are openings at * Sciensano in Belgium * GSK in Italy @@ -203,7 +203,7 @@ The Youtube channel of the Galaxy project has reached 500 subscribers, thank you # Event News -There is not a lot going on in August, but what is happening is compelling. See all [upcoming events here](/events/index.md): +There is not a lot going on in August, but what is happening is compelling. See all [upcoming events here](/events/):
@@ -217,13 +217,13 @@ There is not a lot going on in August, but what is happening is compelling. See
-[September Papercuts](/events/2021-09-papercuts/index.md) +[September Papercuts](/events/2021-09-papercuts/)
**16 September, Online, Global** -Please join us for the [CoFest day](/events/2021-09-papercuts/index.md) on September 16 to help the Galaxy Ecosystem become a better place, and to help new contributors come on board. +Please join us for the [CoFest day](/events/2021-09-papercuts/) on September 16 to help the Galaxy Ecosystem become a better place, and to help new contributors come on board. This month the [Spanish GTN community](https://training.galaxyproject.org/archive/2021-06-01/news/2021/05/20/spanish_project_begins.html) will meet to work on the curated tutorials, at 6 pm CEST. Get in touch with [Wendi Bacon](https://training.galaxyproject.org/archive/2021-06-01/hall-of-fame/nomadscientist/) to participate. @@ -241,13 +241,13 @@ We will be on [Gitter](https://gitter.im/galaxyproject/Lobby) for chat all day l
-[Galaxy @ BioHackathon 2021](/events/2021-11-biohackathon-europe/index.md) +[Galaxy @ BioHackathon 2021](/events/2021-11-biohackathon-europe/)
**Registration closes 17 September** -Galaxy [is featured in at least 7 projects at BioHackathon Europe 2021](/events/2021-11-biohackathon-europe/index.md), being held in Barcelona and online, 8-12 November. Registration is available on a first come, first serve basis. Registration is free, but space is limited. [Register by September 17](https://www.biohackathon-europe.org/registration.html). +Galaxy [is featured in at least 7 projects at BioHackathon Europe 2021](/events/2021-11-biohackathon-europe/), being held in Barcelona and online, 8-12 November. Registration is available on a first come, first serve basis. Registration is free, but space is limited. [Register by September 17](https://www.biohackathon-europe.org/registration.html).
@@ -304,7 +304,7 @@ microGalaxy is a [new community focusing on microbial analysis with Galaxy](http
-[Galaxy Developer Roundtable](/community/devroundtable/index.md) +[Galaxy Developer Roundtable](/community/devroundtable/)
@@ -342,7 +342,7 @@ Yet another workshop to build capacity in SARS-CoV-2 data analysis! It will be a # Galaxy Platforms News -The [Galaxy Platform Directory](/use/index.md) lists resources for easily running your analysis on Galaxy, including publicly available servers, cloud services, and containers and VMs that run Galaxy. Here's the recent platform news we know about: +The [Galaxy Platform Directory](/use/) lists resources for easily running your analysis on Galaxy, including publicly available servers, cloud services, and containers and VMs that run Galaxy. Here's the recent platform news we know about:
@@ -354,7 +354,7 @@ The [Galaxy Platform Directory](/use/index.md) lists resources for easily runnin
-[Galaxy@SLU](/use/galaxy-slu/index.md) +[Galaxy@SLU](/use/galaxy-slu/)
@@ -372,7 +372,7 @@ The [Galaxy@SLU server](http://pharmacology.slu.edu/) aims to provide standard a
-[COVID19.UseGalaxy.fr](/use/covid-19-fr/index.md) +[COVID19.UseGalaxy.fr](/use/covid-19-fr/)
@@ -386,7 +386,7 @@ A COVID-19 focused version of the UseGalaxy.fr server. This server provides num
-[UseGalaxy.*](/usegalaxy/index.md) News +[UseGalaxy.*](/usegalaxy/) News
diff --git a/content/news/custom-galaxy-search/index.md b/content/news/custom-galaxy-search/index.md index 249e0bb617..d2d670765b 100644 --- a/content/news/custom-galaxy-search/index.md +++ b/content/news/custom-galaxy-search/index.md @@ -5,7 +5,7 @@ date: "2011-12-20" **Note: All of these searches were consolidated [into a single search](/search/) in March 2017.**
-Galaxy Web Search Galaxy Mailing List Search Using Galaxy Web SearchGalaxy administration, tool, and deployment search +Galaxy Web Search Galaxy Mailing List Search Using Galaxy Web SearchGalaxy administration, tool, and deployment search

Galaxy now has several Google Custom Search engines that make it much easier to find answers to your questions about Galaxy. They are: diff --git a/content/news/galaxy-at-pag2012/index.md b/content/news/galaxy-at-pag2012/index.md index 23fbe6a8d7..3c0912b0c9 100644 --- a/content/news/galaxy-at-pag2012/index.md +++ b/content/news/galaxy-at-pag2012/index.md @@ -2,7 +2,7 @@ title: "Galaxy @ PAG 2012" date: "2012-01-06" --- -
Galaxy @ Plant and Animal Genome (PAG 2012)
+
Galaxy @ Plant and Animal Genome (PAG 2012)
[Plant and Animal Genome XX (PAG2012)](/events/pag2012/) starts in San Diego on January 14. If you are attending PAG then you will have (at least) [a half-dozen opportunities](/events/pag2012/) to learn more about Galaxy and how it is being used to support research. There will be workshops introducing Galaxy, and on deploying Galaxy in the cloud, and talks and posters on using Galaxy and several local Galaxy deployments. See the [Galaxy @ PAG2012 page](/events/pag2012/) and the [conference website](http://www.intlpag.org/) for more information. diff --git a/content/news/galaxy-training-network/index.md b/content/news/galaxy-training-network/index.md index 9418d3a0f8..1e304beb99 100644 --- a/content/news/galaxy-training-network/index.md +++ b/content/news/galaxy-training-network/index.md @@ -4,7 +4,7 @@ date: "2014-10-16" ---
Galaxy Training Network
-We are pleased to announce the *[Galaxy Training Network (GTN)](/news/galaxy-training-network/index.md)*, a network of trainers who teach bioinformatics using Galaxy, or teach about Galaxy itself. The GTN aims to make it easy to find Galaxy trainers, and to share and discover the wealth of training resources available for Galaxy. This includes training materials, a trainer directory, best practices, and guidance on computing platforms for teaching with Galaxy. The Galaxy Training Network is accessible to the entire community. +We are pleased to announce the *[Galaxy Training Network (GTN)](/news/galaxy-training-network/)*, a network of trainers who teach bioinformatics using Galaxy, or teach about Galaxy itself. The GTN aims to make it easy to find Galaxy trainers, and to share and discover the wealth of training resources available for Galaxy. This includes training materials, a trainer directory, best practices, and guidance on computing platforms for teaching with Galaxy. The Galaxy Training Network is accessible to the entire community. If you teach with Galaxy, then please consider adding your organization, materials, and best practices. The Trainer Directory already includes 16 organizations and there may be one (or 6!) near you. diff --git a/content/news/watchthe-gcc2011-talks-online/index.md b/content/news/watchthe-gcc2011-talks-online/index.md index 95960b775c..e42db43bd9 100644 --- a/content/news/watchthe-gcc2011-talks-online/index.md +++ b/content/news/watchthe-gcc2011-talks-online/index.md @@ -2,7 +2,7 @@ title: "Watch the GCC2011 Talks Online!" date: "2011-06-11" --- -
+
NBIC, the host and co-sponsor of the [2011 Galaxy Community Conference (GCC2011)](https://galaxyproject.org/gcc2011/) sponsored the videotaping of all talks at the meeting and has now made those recordings available for viewing online. See the [GCC2011](https://galaxyproject.org/gcc2011/) page for links. We had several requests for this, and I would like to thank NBIC for making this happen. diff --git a/content/support/finding-tools/index.md b/content/support/finding-tools/index.md index 613a2267e7..da359fa086 100644 --- a/content/support/finding-tools/index.md +++ b/content/support/finding-tools/index.md @@ -14,7 +14,7 @@ ### Can't find the tool you want? * Try searching the **[Tool Shed](http://toolshed.g2.bx.psu.edu)**. - * New tools are added all the time that can be used in **[local](/admin/get-galaxy/index.md)** or **[cloud](/cloudman/)** Galaxy instances. + * New tools are added all the time that can be used in **[local](/admin/get-galaxy/)** or **[cloud](/cloudman/)** Galaxy instances. * If the tool you want to use is not wrapped yet, it could be. * Should you have development resource, wrapped tool contributions are welcome additions to the *[Tool Shed](http://toolshed.g2.bx.psu.edu)** * [Development Resources](/develop/) diff --git a/content/use/ab-openlab/index.md b/content/use/ab-openlab/index.md index 47506f00f7..0ae239c69a 100644 --- a/content/use/ab-openlab/index.md +++ b/content/use/ab-openlab/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "FROG Server" platform_location: IN summary: "FROG stands for **F**inge**R**printing **O**ntology of **G**enomic variations. FROG fingerprints have been devised to capture genomic variations at various levels." -image: "/src/use/ab-openlab/frog.png" +image: "/use/ab-openlab/frog.png" comments: - "The assigned fingerprints enables FROG to make the large number of genomic variations computationally efficient in terms of memory requirements and faster retrieval. This interface has been designed to explore the structure of FROG fingerprints and search mitochondrial variations using fingerprints with a combination of various FROG properties." user_support: diff --git a/content/use/abims-tools/index.md b/content/use/abims-tools/index.md index 779462786d..17a9a85c52 100644 --- a/content/use/abims-tools/index.md +++ b/content/use/abims-tools/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "ABiMS Tools Galaxy server" platform_location: FR summary: "Hosts tools/resources developed at the [Station Biologique de Roscoff](http://www.sb-roscoff.fr/) in collaboration with [ABiMS](http://abims.sb-roscoff.fr/)." -image: "/src/images/logos/ABiMSLogo.png" +image: "/images/logos/ABiMSLogo.png" comments: - "Tools/resources developed at the Station Biologique de Roscoff in collaboration with ABiMS." - "[MicRhoDE workflow](http://application.sb-roscoff.fr/micrhode): places query sequences into MicRhoDE tree (type-1 rhodopsin phylogeny)." diff --git a/content/use/ageseq-aspendb/index.md b/content/use/ageseq-aspendb/index.md index e2304d0588..b7d3760fc6 100644 --- a/content/use/ageseq-aspendb/index.md +++ b/content/use/ageseq-aspendb/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "AGEseq Galaxy @ AspenDB" platform_location: US summary: "This site provides a user-friendly interface for AGEseq (Analysis of Genome Editing by Sequencing) in a Galaxy instance. " -image: "/src/use/ageseq-aspendb/aspen-db-300.png" +image: "/use/ageseq-aspendb/aspen-db-300.png" comments: - "AGEseq compares amplicon sequences with expected target sequences and finds insertion/deletion sites in the amplicon sequences." - "AGEseq can be used for SNP calling." diff --git a/content/use/anastasia/index.md b/content/use/anastasia/index.md index 46855f6bcf..161da8774c 100644 --- a/content/use/anastasia/index.md +++ b/content/use/anastasia/index.md @@ -9,7 +9,7 @@ platforms: platform_location: GR summary: "**A**utomated **N**ucleotide **A**minoacid **S**equences **T**ranslational pl**A**tform for **S**ystemic **I**nterpretation and **A**nalysis" -image: "/src/use/anastasia/anastasia-landing-page-450.png" +image: "/use/anastasia/anastasia-landing-page-450.png" comments: - "A whole-cell bioreporter-based functional screening method" - "Features a novel interface to Galaxy that does not use the tool panel." diff --git a/content/use/anvil/index.md b/content/use/anvil/index.md index 18fbc981c0..a4f9f52a82 100644 --- a/content/use/anvil/index.md +++ b/content/use/anvil/index.md @@ -11,7 +11,7 @@ platforms: platform_url: "https://anvilproject.org/" platform_text: "Galaxy on AnVIL" summary: "Run Galaxy inside the secure AnVIL environment on Google Cloud Platform." -image: "/src/images/logos/anvil-logo-text.png" +image: "/images/logos/anvil-logo-text.png" comments: - "AnVIL moves Galaxy analysis to the cloud and provides integrated access to the large biological data sets there." - "AnVIL is a FISMA-Moderate environment where researchers can perform analysis on personally identifiable data." diff --git a/content/use/apostl/index.md b/content/use/apostl/index.md index 2f5375d0f9..86a8b44a80 100644 --- a/content/use/apostl/index.md +++ b/content/use/apostl/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "APOSTL Galaxy Server" platform_location: US summary: "Automated Processing of SAINT Templated Layouts (APOSTL) is a freely available software suite and analysis pipeline for reproducible, interactive analysis of AP-MS data. " -image: "/src/use/apostl/apostl-logo-300.png" +image: "/use/apostl/apostl-logo-300.png" comments: - "APOSTL is an evolving software project with the potential to customize individual analyses with additional Galaxy tools and widgets using the R web application framework, Shiny. The source code, data and documentation are freely available from [GitHub](https://github.com/bornea/APOSTL) and other sources." - "APOSTL utilizes Significance Analysis of INTeractome (SAINT), a popular command-line software for analyzing AP data. APOSTL can process AP results from MaxQuant, Scaffold, PeptideShaker, or any software that can export mzIdentML." diff --git a/content/use/archive/alveo/index.md b/content/use/archive/alveo/index.md index 5f747a44dc..9c6693ebe9 100644 --- a/content/use/archive/alveo/index.md +++ b/content/use/archive/alveo/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Alveo Galaxy Server" platform_location: AU summary: "Human Communication Science (HCS)." -image: "/src/use/archive/alveo/alveo-logo-w-text.png" +image: "/use/archive/alveo/alveo-logo-w-text.png" comments: - "[Alveo](http://alveo.edu.au/about/) is a platform to support research in Human Communication. The Alveo repository holds large collections of speech, video and text data and provides an API for use by research tools. Our Galaxy server implements a number of research tools for working with speech and text data and we are exploring how best to adapt tools to this environment. Current tools allow data to be pulled from the Alveo repository and processed with various text and speech processing methods." user_support: diff --git a/content/use/archive/ballaxy/index.md b/content/use/archive/ballaxy/index.md index 2a776ca1ca..31a4823d32 100644 --- a/content/use/archive/ballaxy/index.md +++ b/content/use/archive/ballaxy/index.md @@ -7,7 +7,7 @@ platforms: platform_url: "https://hub.docker.com/r/anhi/ballaxy/" platform_text: "ballaxy using Docker" summary: "Hosts the [BALL (Biochemical Algorithms Library) Project tools](http://www.ball-project.org/), i.e. computer aided drug design and molecular modelling based on protein and ligand structure data. " -image: "/src/use/archive/ballaxy/ballaxy-slide.png" +image: "/use/archive/ballaxy/ballaxy-slide.png" comments: - "ballaxy is a workflow framework for structure based computational biology based on the Galaxy workflow engine and the [BALL (Biochemical Algorithms Library) application framework](http://www.ball-project.org/). It is tailored to handle structural molecular data (pdb, mol, mol2, hin, xyz, smiles) and to offer tools for modelling tasks like chemical shift prediction" user_support: diff --git a/content/use/archive/chip-seq-docker/index.md b/content/use/archive/chip-seq-docker/index.md index 78cde66fa8..41b92b5046 100644 --- a/content/use/archive/chip-seq-docker/index.md +++ b/content/use/archive/chip-seq-docker/index.md @@ -7,7 +7,7 @@ platforms: platform_url: "https://hub.docker.com/r/iguigon/galaxy_docker_chipseq/" platform_text: "Galaxy ChIP-Seq Docker Image" summary: "Galaxy Docker image for ChipSeq analysis" -image: "/src/images/logos/DockerInGalaxy.png" +image: "/images/logos/DockerInGalaxy.png" comments: - "The Galaxy Docker ChipSeq image contains a complete Galaxy installation with some tools useful for ChipSeq analysis." user_support: diff --git a/content/use/archive/dbcls-galaxy/index.md b/content/use/archive/dbcls-galaxy/index.md index a527bf05fd..53cae6d0bb 100644 --- a/content/use/archive/dbcls-galaxy/index.md +++ b/content/use/archive/dbcls-galaxy/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "DBCLS Galaxy" platform_location: JP summary: "Adds text mining tools, DBCLS DBSearch Tools, semantic web tools " -image: "/src/use/archive/dbcls-galaxy/dbcls.png" +image: "/use/archive/dbcls-galaxy/dbcls.png" comments: - "Can be used without understanding Japanese." - "See also [Galaxy入門とワークフロー構築](https://depot.galaxyproject.org/hub/attachments/documents/presentations/2013DDBJWorkflow.pdf) by [山口 敦子](mailto:atsuko AT dbcls DOT jp)" diff --git a/content/use/archive/ddbj/index.md b/content/use/archive/ddbj/index.md index 6ba169573f..0ac5d30632 100644 --- a/content/use/archive/ddbj/index.md +++ b/content/use/archive/ddbj/index.md @@ -10,7 +10,7 @@ platforms: summary: "Annotates raw sequencing reads from next-generation sequencers(NGS) with high throughput, which are registered in DDBJ Read Archive (DRA)." comments: - "Pipeline consists of two processes: basic process for genome mapping and de novo assembly, and high-level process for structural and functional annotations such as single nucleotide polymorphism (SNP) detection and expression tag counts." -image: "/src/use/archive/ddbj/ddbj-rap-banner.png" +image: "/use/archive/ddbj/ddbj-rap-banner.png" user_support: - "[Tutorials and manuals in English and Japanese](https://p.ddbj.nig.ac.jp/pipeline/Login.do)" quotas: diff --git a/content/use/archive/docmethyl/index.md b/content/use/archive/docmethyl/index.md index 2736b11a03..9a09a9716d 100644 --- a/content/use/archive/docmethyl/index.md +++ b/content/use/archive/docmethyl/index.md @@ -7,7 +7,7 @@ platforms: platform_url: "https://hub.docker.com/r/lsbnb/docmethyl" platform_text: "DocMethyl EpiMOLAS Docker" summary: "Galaxy Docker for DNA methylation analysis in WGBS" -image: "/src/images/logos/DockerInGalaxy.png" +image: "/images/logos/DockerInGalaxy.png" comments: - "This Galaxy docker container have tested with demo dataset under the Ubuntu 16.04 64 bit system equipped with four-core CPU, 32GB RAM, 400GB storage." user_support: diff --git a/content/use/archive/gmt/index.md b/content/use/archive/gmt/index.md index 38d084e0e1..253b195b35 100644 --- a/content/use/archive/gmt/index.md +++ b/content/use/archive/gmt/index.md @@ -7,7 +7,7 @@ platforms: platform_url: "https://quay.io/shiltemann/galaxy-mothur-toolset" platform_text: "Galaxy mothur Toolset Docker Image" summary: "Galaxy Docker image for microbial ecology analysis with [mothur](https://www.mothur.org/)" -image: "/src/images/logos/mothur_300.png" +image: "/images/logos/mothur_300.png" comments: - "GmT is available from the Galaxy Tool Shed, and a workflow definition file. A Docker image with a fully configured GmT Galaxy is also available." user_support: diff --git a/content/use/archive/in-silico-galaxy/index.md b/content/use/archive/in-silico-galaxy/index.md index 61d8a701ea..dab0e347bb 100644 --- a/content/use/archive/in-silico-galaxy/index.md +++ b/content/use/archive/in-silico-galaxy/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "In Silico Galaxy" platform_location: US summary: "Construction, analysis, and visualization of gene-gene interaction networks for sequencing data. " -image: "/src/images/logos/UTulsaLogo.png" +image: "/images/logos/UTulsaLogo.png" comments: - 'Implements [Encore](http://onlinelibrary.wiley.com/doi/10.1002/gepi.21739/abstract), "an open source network analysis pipeline for genome-wide association studies and rare variant data. Encore constructs Genetic Association Interaction Networks or epistasis networks using two optional approaches: our previous information-theory method or a generalized linear model approach. Additionally, Encore includes multiple data filtering options, including Random Forest/Random Jungle for main effect enrichment and Evaporative Cooling and Relief-F filters for enrichment of interaction effects. Encore implements SNPrank network centrality for identifying susceptibility hubs (nodes containing a large amount of disease susceptibility information through the combination of multivariate main effects and multiple gene-gene interactions in the network)"' user_support: diff --git a/content/use/archive/koslicki-lab/index.md b/content/use/archive/koslicki-lab/index.md index 8a7d7b4b76..991eb3734b 100644 --- a/content/use/archive/koslicki-lab/index.md +++ b/content/use/archive/koslicki-lab/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Koslicki Lab Galaxy server" platform_location: US summary: "Web based access to tools created by the Koslicki Lab at Oregon State University. " -image: "/src/images/logos/OregonStateU.jpg" +image: "/images/logos/OregonStateU.jpg" comments: - "Implements these [Koslicki Lab](http://www.math.oregonstate.edu/~koslickd/) ([Oregon State University](http://www.oregonstate.edu/)) tools:" - "[ARK](https://github.com/dkoslicki/ARK) and [Quikr](https://github.com/dkoslicki/Quikr)/[SEK](https://github.com/dkoslicki/SEK) for 16S rRNA based taxonomic profiling" diff --git a/content/use/archive/lap/index.md b/content/use/archive/lap/index.md index 891eb39ead..4834e83c29 100644 --- a/content/use/archive/lap/index.md +++ b/content/use/archive/lap/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "LAP Galaxy Server" platform_location: NO summary: "Web interface to a centralized repository of a wide range of language technology tools, all installed on a high-performance computing (HPC) cluster." -image: "/src/images/logos/clarino-logo-trans.png" +image: "/images/logos/clarino-logo-trans.png" comments: - "a typical scenario is for a user to upload some ‘raw’ textual data, invoke LAP linguistic analysis tools to create annotations of the text, export processing results into a format suitable for analysis by the user, and download the resulting file(s) back onto their own computer." user_support: diff --git a/content/use/archive/mbac-metabiome-portal/index.md b/content/use/archive/mbac-metabiome-portal/index.md index 753f5e2c65..0f71762e19 100644 --- a/content/use/archive/mbac-metabiome-portal/index.md +++ b/content/use/archive/mbac-metabiome-portal/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "MBAC Metabiome Server" platform_location: US summary: "Simplifying control, usage, access, and analysis of microbiome, metabolome, and immunome data (the Metabiome). " -image: "/src/use/archive/mbac-metabiome-portal/mbac-portal-landing-page.png" +image: "/use/archive/mbac-metabiome-portal/mbac-portal-landing-page.png" comments: - "[MBAC Metabiome Portal](http://mbac.gmu.edu/mbac_wp/)" - "We have developed the [MBAC Metabiome Portal](http://mbac.gmu.edu/mbac/display_detail.php?tb=research&id=11), a flexible and customizable webserver, with the aim of simplifying control, usage, access, and analysis of microbiome, metabolome, and immunome data (the Metabiome)." diff --git a/content/use/archive/micloud/index.md b/content/use/archive/micloud/index.md index 8343a6f426..e86cc7de11 100644 --- a/content/use/archive/micloud/index.md +++ b/content/use/archive/micloud/index.md @@ -7,7 +7,7 @@ platforms: platform_url: "http://github.com/BCIL/Personal-NGS-Cloud" platform_text: "miCloud Docker Image" summary: "Leverage cloud technologies to provide an easy-to-use streamlined NGS data analysis using local computational hardware" -image: "/src/images/logos/DockerInGalaxy.png" +image: "/images/logos/DockerInGalaxy.png" comments: - "Includes three preconfigured and ready-to-execute NGS pipelines: two for single or paired-end ChIP-Seq data and one for paired-end RNA-Seq data" - "miCloud can also provide access to a large selection of ready-to-execute bioinformatics pipelines, available from online Docker repositories such as BioContainers, DockStore, or BioShadock" diff --git a/content/use/archive/nelly/index.md b/content/use/archive/nelly/index.md index ea2af1103e..e77bbf206f 100644 --- a/content/use/archive/nelly/index.md +++ b/content/use/archive/nelly/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "NELLY" platform_location: CR summary: "Plataforma de servicios para análisis de datos biomédicos en bioinformática featuring standard Galaxy Tools " -image: "/src/use/archive/nelly/u-costa-rica-logo.png" +image: "/use/archive/nelly/u-costa-rica-logo.png" comments: - "A public Central American Galaxy instance." user_support: diff --git a/content/use/archive/ngs-qc/index.md b/content/use/archive/ngs-qc/index.md index c06c89061d..988189f3cf 100644 --- a/content/use/archive/ngs-qc/index.md +++ b/content/use/archive/ngs-qc/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "NGS-QC Server" platform_location: FR summary: "Evaluate the quality of your favorite ChIP-seq or enrichment-related NGS dataset using [NGS-QC Generator](http://www.ngs-qc.org/), which also includes a [database with preprocessed profiles and a tutorial on how to analyze sequencing profiles yourself](http://www.ngs-qc.org/database.php)." -image: "/src/use/archive/ngs-qc/ngs-qc-generator.png" +image: "/use/archive/ngs-qc/ngs-qc-generator.png" comments: - "A quality control system for ChIP-Seq and related deep sequencing-generated datasets" user_support: diff --git a/content/use/archive/pipe-clip/index.md b/content/use/archive/pipe-clip/index.md index ce3d01400b..68d1ac0bbe 100644 --- a/content/use/archive/pipe-clip/index.md +++ b/content/use/archive/pipe-clip/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "PIPE-CLIP" platform_location: US summary: "Reliable analysis of data generated by three types of CLIP-seq protocol: HITS-CLIP, PAR-CLIP and iCLIP. " -image: "/src/use/archive/qbrc-galaxy/qbrc-logo.jpg" +image: "/use/archive/qbrc-galaxy/qbrc-logo.jpg" comments: - "Alse see the [QBRC server](/use/archive/qbrc-galaxy/)." user_support: diff --git a/content/use/archive/pl-grid/index.md b/content/use/archive/pl-grid/index.md index 53aed6def5..6454eb925f 100644 --- a/content/use/archive/pl-grid/index.md +++ b/content/use/archive/pl-grid/index.md @@ -9,7 +9,7 @@ platforms: platform_text: "PL-Grid Galaxy Server" platform_location: PL summary: "*The PL-Grid project is [free of charge](https://docs.plgrid.pl/pages/viewpage.action?pageId=11306686#Diagnostykamolekularna(GalaxyServer)-platformaanalizydanychzNGS-becoming_userBecomingauser(Aktywowanieusługi)) for any Polish scientist. It is also free for any foreign collaborator of Polish scientists.*" -image: "/src/use/archive/pl-grid/pl-grid-logo.png" +image: "/use/archive/pl-grid/pl-grid-logo.png" comments: - "This deployment is focused on NGS analyses." user_support: diff --git a/content/use/archive/qbrc-galaxy/index.md b/content/use/archive/qbrc-galaxy/index.md index 2ae563dc17..0ec55f8620 100644 --- a/content/use/archive/qbrc-galaxy/index.md +++ b/content/use/archive/qbrc-galaxy/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "QBRC Galaxy" platform_location: US summary: "Hosts custom tools developed by members of the Quantitative Biomedical Research Center @ University of Texas Southwestern for statistical analysis of various High Throughput Sequencing experiments. " -image: "/src/use/archive/qbrc-galaxy/qbrc-logo.jpg" +image: "/use/archive/qbrc-galaxy/qbrc-logo.jpg" comments: - "Hosts custom tools developed by members of the [Quantitative Biomedical Research Center @ University of Texas Southwestern](http://qbrc.swmed.edu/) for statistical analysis of various High Throughput Sequencing experiments." - "Features:" diff --git a/content/use/archive/rdf2graph/index.md b/content/use/archive/rdf2graph/index.md index 8d55bc141f..fa4a593f24 100644 --- a/content/use/archive/rdf2graph/index.md +++ b/content/use/archive/rdf2graph/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "RDF2Graph Server" platform_location: NL summary: "RDF2Graph recovers the structure of an RDF resource. " -image: "/src/use/archive/rdf2graph/rdf2graph_reactome.png" +image: "/use/archive/rdf2graph/rdf2graph_reactome.png" comments: - "Graphs can be exported to [Cytoscape](http://www.cytoscape.org/), OWL, and [ShEx](http://www.w3.org/2001/sw/wiki/ShEx)." user_support: diff --git a/content/use/archive/rna-rocket-pathogen-portal/index.md b/content/use/archive/rna-rocket-pathogen-portal/index.md index 2010f8d16a..d621acdcee 100644 --- a/content/use/archive/rna-rocket-pathogen-portal/index.md +++ b/content/use/archive/rna-rocket-pathogen-portal/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "RNA-Rocket at Pathogen Portal" platform_location: US summary: "Supports comparative analysis of host response to pathogens. It provides an RNA-Seq pipeline to characterize the transcriptome of all NIAID Bioinformatic Resource Center (BRC) pathogens and their key hosts. " -image: "/src/use/archive/rna-rocket-pathogen-portal/pathogen-portal-home-300.png" +image: "/use/archive/rna-rocket-pathogen-portal/pathogen-portal-home-300.png" comments: - 'From [Lew, *et al.*](http://www.sciencedirect.com/science/article/pii/S147297921200203X): "It can analyze transcriptome data for genomes stored at [EuPathDB](http://www.eupathdb.org/), [PATRIC](http://www.patricbrc.org/), and [VectorBase](http://www.vectorbase.org/). The pipeline is built on Galaxy. Galaxy has been modified to simplify RNA-Seq analysis for *informatics-naïve, biologically focused* users and provide a guided experience to quality control of read data, read mapping, assembling transcripts, estimating gene expression values, and doing differential expression analysis"' - "Map your RNA-Seq Reads to Reference Genomes: Align your Illumina fastQ reads (gzipped fastQ files accepted) against any sequenced genome from [EuPathDB](http://www.eupathdb.org/), [PATRIC](http://www.patricbrc.org/), and [VectorBase](http://www.vectorbase.org/)." diff --git a/content/use/archive/rnacommender/index.md b/content/use/archive/rnacommender/index.md index f2417eda68..e4e3ee3c89 100644 --- a/content/use/archive/rnacommender/index.md +++ b/content/use/archive/rnacommender/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Docker" platform_location: IT summary: "RNAcommender is a tool for genome-wide recommendation of RNA-protein interactions. It is a recommender system capable of suggesting RNA targets to unexplored RNA binding proteins, by propagating the available interaction information, taking into account the protein domain composition and the RNA predicted secondary structure." -image: "/src/use/archive/rnacommender/rnacommender.png" +image: "/use/archive/rnacommender/rnacommender.png" comments: - "Available in Docker and in the Galaxy Toolshed." user_support: diff --git a/content/use/archive/sifted/index.md b/content/use/archive/sifted/index.md index fec4849304..6a91a98a63 100644 --- a/content/use/archive/sifted/index.md +++ b/content/use/archive/sifted/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "SIFTED Galaxy Server" platform_location: US summary: "Specificity Inference For TAL-Effector Design (SIFTED)" -image: "/src/use/archive/sifted/sifted-landing-page.png" +image: "/use/archive/sifted/sifted-landing-page.png" comments: - "SIFTED is a computational model for predicting the DNA-binding specificity of any Transcription activator-like effector (TALE) proteins." user_support: diff --git a/content/use/archive/zbit-bioinformatics-toolbox/index.md b/content/use/archive/zbit-bioinformatics-toolbox/index.md index c2c653c2bf..2af9715ef9 100644 --- a/content/use/archive/zbit-bioinformatics-toolbox/index.md +++ b/content/use/archive/zbit-bioinformatics-toolbox/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "ZBIT Bioinformatics Toolbox" platform_location: DE summary: "This customized version of the Galaxy webservice framework was set up to allow the public access of our bioinformatics tools. These tools were developed and implemented by members of the [Department of Cognitive Systems](http://www.cogsys.cs.uni-tuebingen.de/) at the [University of Tübingen](http://www.uni-tuebingen.de/). " -image: "/src/use/archive/zbit-bioinformatics-toolbox/zbit.png" +image: "/use/archive/zbit-bioinformatics-toolbox/zbit.png" comments: - "Includes these tools developed at Tübingen:" - "[TFpredict](http://www.cogsys.cs.uni-tuebingen.de/software/TFpredict/welcome_e.html): Identification and structural characterization of transcription factors" diff --git a/content/use/arga/index.md b/content/use/arga/index.md index 325e794f39..49a0ee18d4 100644 --- a/content/use/arga/index.md +++ b/content/use/arga/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "ARGA" platform_location: CN summary: "Antibiotic Resistance Gene Analyzer" -image: "/src/use/arga/arga-pipeline.png" +image: "/use/arga/arga-pipeline.png" comments: - "This pipeline is used for antibiotic resistance genes (ARGs) analysis based on the Sequence Database for ARGs (SDARG). All the nucleotide and protein sequences in SDARG and ARGs primer databases could be downloaded in the Shared Data, Data Libraries panel at the top of this page." user_support: diff --git a/content/use/args-oap/index.md b/content/use/args-oap/index.md index cbca60885f..6aa76b4219 100644 --- a/content/use/args-oap/index.md +++ b/content/use/args-oap/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "ARGs-OAP Galaxy Server" platform_location: HK summary: "Fast annotation and classification of antibiotic resistance gene-like sequences from metagenomic data. " -image: "/src/use/args-oap/args-oap.png" +image: "/use/args-oap/args-oap.png" comments: - 'Integrated "ARDB and CARD, the two most commonly used databases. SARG was curated to remove redundant sequences and optimized to facilitate query sequence identification by similarity. A database with a hierarchical structure (type-subtype-reference sequence) was then constructed to facilitate classification (assigning ARG-like sequence to type, subtype and reference sequence) of sequences identified through similarity search." The server utilizes the SARG DB and a hybrid functional gene annotation pipeline to do fast annotation and classification of ARG-like sequences from metagenomic data.' - "Source code is available on [GitHub](https://github.com/biofuture/Ublastx_stageone)." diff --git a/content/use/aries/index.md b/content/use/aries/index.md index 0873af79a5..54c2598740 100644 --- a/content/use/aries/index.md +++ b/content/use/aries/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "ARIES" platform_location: IT summary: "Analysis of genomic data in the field of public health and food safety, with the aim of deploying a comprehensive bioinformatics approach to the study of food-borne zoonoses and infectious diseases at the human and animal interface." -image: "/src/use/aries/aries-drawing-200.jpg" +image: "/use/aries/aries-drawing-200.jpg" comments: - "The web portal is termed ARIES (Advanced Research Infrastructure for Experimentation in genomicS). Aims:" - "Development of an Information System for the collection of genomic and epidemiological data to enable the Next Generation Sequencing (NGS)-based surveillance of infectious epidemics, foodborne outbreaks and diseases at the animal-human interface." diff --git a/content/use/aws/index.md b/content/use/aws/index.md index 2c496854c4..738dd23a3c 100644 --- a/content/use/aws/index.md +++ b/content/use/aws/index.md @@ -7,7 +7,7 @@ platforms: platform_url: "https://launch.usegalaxy.org/" platform_text: "Galaxy on AWS via CloudLaunch" summary: "Set up you own general purpose genomics server runing AWS using GVL and CloudMan." -image: "/src/images/logos/AWSLogo400.png" +image: "/images/logos/AWSLogo400.png" comments: - "Using [CloudLaunch](https://launch.usegalaxy.org/) you can set up your own dynamically scalable Galaxy Server in less than 10 minutes." - "You need to have an account on AWS and have a credit card associated with that account." diff --git a/content/use/basic-sequence/index.md b/content/use/basic-sequence/index.md index 237021a61f..0645ffe821 100644 --- a/content/use/basic-sequence/index.md +++ b/content/use/basic-sequence/index.md @@ -7,7 +7,7 @@ platforms: platform_url: "https://hub.docker.com/r/bgruening/galaxy-sequence-tools/" platform_text: "Galaxy for basic sequence manipulation." summary: "Galaxy Docker repository for basic sequence data analysis." -image: "/src/images/logos/DockerInGalaxy.png" +image: "/images/logos/DockerInGalaxy.png" comments: - "Galaxy in Docker for basic sequence manipulation." user_support: diff --git a/content/use/bf2i-map/index.md b/content/use/bf2i-map/index.md index 9b07ba62e9..4bb1ee5ea3 100644 --- a/content/use/bf2i-map/index.md +++ b/content/use/bf2i-map/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "BF2I-MAP Galaxy Server" platform_location: FR summary: "Locally developed as well as standard tools are available on a 16-core server with 32GB memory, accessible to all users, and located in the BF2I lab." -image: "/src/use/bf2i-map/bf21-map-sponsors.png" +image: "/use/bf2i-map/bf21-map-sponsors.png" comments: - "ThreaDNA allows generalising the approach to a large class of DNA-binding proteins." user_support: diff --git a/content/use/biobix/index.md b/content/use/biobix/index.md index 3ed75ce3aa..fb7e83b93a 100644 --- a/content/use/biobix/index.md +++ b/content/use/biobix/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "BioBix Galaxy" platform_location: BE summary: "A general genomics server. Includes the PROTEOFORMER pipeline tools." -image: "/src/use/biobix/biobix_logo.png" +image: "/use/biobix/biobix_logo.png" comments: - "Standard Galaxy genomics tools, plus PROTEOFORMER tools. PROTEOFORMER is a proteogenomic pipeline that delineates true *in vivo* proteoforms and generates a protein sequence search space for peptide to MS/MS matching." user_support: diff --git a/content/use/biociphers-lab-galaxy/index.md b/content/use/biociphers-lab-galaxy/index.md index fd3301a07e..c63201b750 100644 --- a/content/use/biociphers-lab-galaxy/index.md +++ b/content/use/biociphers-lab-galaxy/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "BioCiphers Galaxy" platform_location: US summary: "BCL Galaxy gives a user friendly interface for analysis tools developed by the [BioCiphers Lab](http://biociphers.org/) at the University of Pennsylvania. " -image: "/src/use/biociphers-lab-galaxy/biociphers-landing-page-300.png" +image: "/use/biociphers-lab-galaxy/biociphers-landing-page-300.png" comments: - "Includes the AVISPA alternative splicing prediction and analysis tool." user_support: diff --git a/content/use/biodivine/index.md b/content/use/biodivine/index.md index aff61a09a1..c0ded40745 100644 --- a/content/use/biodivine/index.md +++ b/content/use/biodivine/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Galaxy server. " platform_location: CZ summary: "Systems biology tools implemented by the Sybila team." -image: "/src/use/biodivine/sybila.png" +image: "/use/biodivine/sybila.png" comments: - "Tools implemented by [Sybila team](https://sybila.fi.muni.cz/)" - "All tools can be found on [GitHub](https://github.com/sybila/)." diff --git a/content/use/biomas/index.md b/content/use/biomas/index.md index 3584e6df3a..d7bfb8d6b0 100644 --- a/content/use/biomas/index.md +++ b/content/use/biomas/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "BioMaS Galaxy" platform_location: IT summary: "Taxonomic studies of environmental microbial communities " -image: "/src/use/biomas/biomas-logo.jpg" +image: "/use/biomas/biomas-logo.jpg" comments: - 'BioMaS (Bioinformatic analysis of Metagenomic AmpliconS) supports taxonomic studies of environmental microbial communities, "comprehensive of all the fundamental steps, from raw sequence data upload and cleaning to final taxonomic identification, that are absolutely required in an appropriately designed Meta-barcoding HTS-based experiment."' user_support: diff --git a/content/use/bipaa/index.md b/content/use/bipaa/index.md index 14c9ba1b8d..4fa252d012 100644 --- a/content/use/bipaa/index.md +++ b/content/use/bipaa/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "BIPAA Galaxy Server" platform_location: FR summary: "Insect genomics (aphids, parasitoïd wasps, lepidopterans)" -image: "/src/use/bipaa/bipaa-logo.png" +image: "/use/bipaa/bipaa-logo.png" comments: - "[BIPAA home page](https://bipaa.genouest.org/)" - "Includes tools for the analysis of insect genomes (annotation, transcriptomics, epigenomics, ...)." diff --git a/content/use/bitlab/index.md b/content/use/bitlab/index.md index 15f7f55fb1..306b99c7a3 100644 --- a/content/use/bitlab/index.md +++ b/content/use/bitlab/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "BitLAB Galaxy" platform_location: ES summary: "Detailed analysis of metagenomes. " -image: "/src/use/bitlab/bitlab.png" +image: "/use/bitlab/bitlab.png" comments: - " ... provides new tools and datafile specifications that facilitate the identification of differences in abundance of reads assigned to taxa (mapping), enables the detection of reads of low-abundance bacteria (producing evidence of their presence), provides new concepts for filtering spurious matches, etc. Innovative visualization ideas for improved display of metagenomic diversity are also proposed to better understand how reads are mapped to taxa." user_support: diff --git a/content/use/blast/index.md b/content/use/blast/index.md index f2f000cd49..7f01ff3962 100644 --- a/content/use/blast/index.md +++ b/content/use/blast/index.md @@ -7,7 +7,7 @@ platforms: platform_url: "https://hub.docker.com/r/bgruening/galaxy-blast/" platform_text: "Galaxy BLAST+ Docker" summary: "A complete and production ready Galaxy instance with installed BLAST+ tools." -image: "/src/images/logos/DockerInGalaxy.png" +image: "/images/logos/DockerInGalaxy.png" comments: - "You can get BLAST databases directly from the NCBI server and include them into your Galaxy docker container." user_support: diff --git a/content/use/cart/index.md b/content/use/cart/index.md index e98c80374c..ccb70609e4 100644 --- a/content/use/cart/index.md +++ b/content/use/cart/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Server" platform_location: DE summary: "Retrieves annotations on biological effects of chemicals and determines which ones are enriched. " -image: "/src/use/cart/cart.png" +image: "/use/cart/cart.png" comments: - "it matches an input list of chemical names into a comprehensive reference space to assign unambiguous chemical identifiers. In this unified space, bioactivity annotations can be easily retrieved from databases covering a wide variety of chemical effects on biological systems. Subsequently, CART can determine annotations enriched in the input set of chemicals and display these in tabular format and interactive network visualizations, thereby facilitating integrative analysis of chemical bioactivity data." - "Source code and an easy-to-install command line tool are also available." diff --git a/content/use/cbib-galaxy/index.md b/content/use/cbib-galaxy/index.md index cc4870bc66..78767831f5 100644 --- a/content/use/cbib-galaxy/index.md +++ b/content/use/cbib-galaxy/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "CBiB Galaxy" platform_location: FR summary: "A general purpose Galaxy instance that includes EMBOSS (a software analysis package for molecular biology) and fibronectin (diversity analysis of synthetic libraries of a Fibronectin domain). " -image: "/src/images/logos/cbib-logo-300.png" +image: "/images/logos/cbib-logo-300.png" comments: - "Dedicated server: 4 CPU Intel Xeon - 8 cores (a total of 32 cores / 64 threads) , 128 GB RAM, 800 GB of disk space." user_support: diff --git a/content/use/cell-organizer/index.md b/content/use/cell-organizer/index.md index 859ae4d296..8703e66ef5 100644 --- a/content/use/cell-organizer/index.md +++ b/content/use/cell-organizer/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "CellOrganizer for Galaxy" platform_location: US summary: "Create generative models of the spatial organization of cells from microscope images and automatically provide geometries for spatial simulations of cell processes and behaviors" -image: "/src/use/cell-organizer/cell-organizer-logo2-250.jpg" +image: "/use/cell-organizer/cell-organizer-logo2-250.jpg" comments: - "This webserver is provided to provide access to CellOrganizer tools for users who do not have the resources to run the Matlab or Docker versions." user_support: diff --git a/content/use/center-for-phage-technology-cpt/index.md b/content/use/center-for-phage-technology-cpt/index.md index a75ec89a2f..7be727a35f 100644 --- a/content/use/center-for-phage-technology-cpt/index.md +++ b/content/use/center-for-phage-technology-cpt/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Center for Phage Technology (CPT) Galaxy Server" platform_location: US summary: "Phage biology and automated annotation. " -image: "/src/use/center-for-phage-technology-cpt/cpt-logo.png" +image: "/use/center-for-phage-technology-cpt/cpt-logo.png" comments: - "[CPT home page](https://cpt.tamu.edu/)" - "Server includes many genbank and gff3 processing tools, largely focused on annotation of phages." diff --git a/content/use/chemflow/index.md b/content/use/chemflow/index.md index 8843fac04c..d4b0d22697 100644 --- a/content/use/chemflow/index.md +++ b/content/use/chemflow/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "ChemFlow" platform_location: FR summary: "Chemometrics without programming: infrared spectrometry on a Galaxy platform." -image: "/src/use/chemflow/chemflow-logo.png" +image: "/use/chemflow/chemflow-logo.png" comments: - "A free online analytical pipeline for developing chemometric approaches." - "Chemometrics is a collection of tools for extracting information from spectral data. The methods are essentially linear, with regressions, discriminant analyzes, unsupervised classifications, spectral decompositions, multi-array-multipath methods, plus pretreatments. Many applications focus on the near infrared. Its complementarity with the [Chemoocs mooc on France Digital University](https://www.fun-mooc.fr/) guarantees the correct use of chemometrics tools." diff --git a/content/use/cirm-cfbp/index.md b/content/use/cirm-cfbp/index.md index e0c9528b68..c741de93e7 100644 --- a/content/use/cirm-cfbp/index.md +++ b/content/use/cirm-cfbp/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "CIRM-CFBP Server" platform_location: FR summary: "Web based access to tools ([SkIf](https://sourcesup.renater.fr/wiki/skif/), [KI-S](https://sourcesup.renater.fr/wiki/ki-s/)) of IRHS-EmerSys lab." -image: "/src/use/cirm-cfbp/cirm-cfbp-banner.png" +image: "/use/cirm-cfbp/cirm-cfbp-banner.png" comments: - "Virtual machine, 4 virtual CPUs, 8GB RAM, 1To of disk space." - "[CIRM-CFBP bioinformatics tools](https://www6.inra.fr/cirm_eng/CFBP-Plant-Associated-Bacteria/Bioinformatics-tools)" diff --git a/content/use/cistrome-analysis-pipeline/index.md b/content/use/cistrome-analysis-pipeline/index.md index d09ee5c6e7..fc8374e4b6 100644 --- a/content/use/cistrome-analysis-pipeline/index.md +++ b/content/use/cistrome-analysis-pipeline/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Cistrome Analysis Pipeline" platform_location: US summary: "ChIP-chip/seq and gene expression data " -image: "/src/use/cistrome-analysis-pipeline/cistrome.png" +image: "/use/cistrome-analysis-pipeline/cistrome.png" comments: - "The [Cistrome Analysis Pipeline](http://cistrome.org/ap/root) has the standard Galaxy tools, plus 29 additional ChIP-chip and ChIP-seq specific tools, including preliminary peak calling and correlation analyses, downstream genome feature association, gene expression analyses, and motif discovery." user_support: diff --git a/content/use/climate-science-workbench/index.md b/content/use/climate-science-workbench/index.md index a8610ae679..5c621378e1 100644 --- a/content/use/climate-science-workbench/index.md +++ b/content/use/climate-science-workbench/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Climate Science Workbench" platform_location: DE summary: "A comprehensive set of analysis tools and consolidated workflows for climate analysis and visualisation" -image: "/src/use/climate-science-workbench/galaxy-climate-200.png" +image: "/use/climate-science-workbench/galaxy-climate-200.png" comments: - "Supports general GIS data handling tools and climate analysis-specific tools" - "The public server is hosted by the UesGalaxy.eu team." diff --git a/content/use/climb/index.md b/content/use/climb/index.md index ad4fadc9b4..457bc7feae 100644 --- a/content/use/climb/index.md +++ b/content/use/climb/index.md @@ -9,7 +9,7 @@ platforms: platform_text: "CLIMB" platform_location: UK summary: "The CLIMB project (Cloud Infrastructure for Microbial Bioinformatics) develops and deploys a world leading cyber-infrastructure for microbial bioinformatics; providing free cloud-based compute, storage, and analysis tools for academic microbiologists in the UK." -image: "/src/images/logos/mrc-climb-logo.png" +image: "/images/logos/mrc-climb-logo.png" comments: - "To register for a CLIMB group account, you must:" - "1. Be a UK academic or public sector worker working on microbial genomics" diff --git a/content/use/codon-harmonizer/index.md b/content/use/codon-harmonizer/index.md index 96429dec9c..dedc4b6f6d 100644 --- a/content/use/codon-harmonizer/index.md +++ b/content/use/codon-harmonizer/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Galaxy Server" platform_location: NL summary: "Easily generate codon harmonized variants of gene sequences for heterologous expression" -image: "/src/images/logos/WageningenUniversity.jpg" +image: "/images/logos/WageningenUniversity.jpg" comments: - "From [Claassens et al](https://doi.org/10.1371/journal.pone.0184355):" - "...different codon usage variants significantly improved production of some of the tested proteins. However, not a single algorithm performed consistently best for the membrane-integrated production of the 6 tested proteins. In conclusion, for improving heterologous membrane protein production in E. coli, the major effect is accomplished by transcriptional tuning. In addition, further improvements may be realized by attempting different codon usage variants, such as codon harmonized variants, which can now be easily generated through our online Codon Harmonizer tool." diff --git a/content/use/coral-snp/index.md b/content/use/coral-snp/index.md index 3d6e63823e..a99d4576cc 100644 --- a/content/use/coral-snp/index.md +++ b/content/use/coral-snp/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "CoralSNP Galaxy Server" platform_location: US summary: "Standard Tools for Acroporid Genotyping (STAG)" -image: "/src/use/coral-snp/coral.jpg" +image: "/use/coral-snp/coral.jpg" comments: - "In STAG the user’s data is compared to the database of previously genotyped samples and generates a report of genet identification. " user_support: diff --git a/content/use/corgat/index.md b/content/use/corgat/index.md index d90c7ea56e..e8fa144b61 100644 --- a/content/use/corgat/index.md +++ b/content/use/corgat/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "CorGAT on Laniakea" platform_location: IT summary: "Align complete assemblies of SARS-CoV-2 genomes wih the reference genomic sequence, to obtain a list of polymorphic positions and to annotate genetic variants." -image: "/src/use/laniakea/laniakea_logo_def_white_background.png" +image: "/use/laniakea/laniakea_logo_def_white_background.png" comments: - "CorGAT runs on the [Laniakea](/use/laniakea/) research cloud." quotas: diff --git a/content/use/cossci/index.md b/content/use/cossci/index.md index f9dbc2f1db..2f77885644 100644 --- a/content/use/cossci/index.md +++ b/content/use/cossci/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "CoSSci Complex Social Science Gateway" platform_location: US summary: "Tools for solving [Galton's problem](http://en.wikipedia.org/wiki/Galton's_problem) in Comparative Research and complex network problems in Social Science. " -image: "/src/use/cossci/cossci-map.png" +image: "/use/cossci/cossci-map.png" comments: - "This project uses compute resources provided by the [NSF XSEDE project](https://www.xsede.org/)." user_support: diff --git a/content/use/cravat-p/index.md b/content/use/cravat-p/index.md index 6cefb91abc..a053c23e1b 100644 --- a/content/use/cravat-p/index.md +++ b/content/use/cravat-p/index.md @@ -7,7 +7,7 @@ platforms: platform_url: "https://hub.docker.com/r/jraysajulga/galaxy-cravatp-docker/" platform_text: "CRAVAT-P Galaxy Docker" summary: "A Docker image containing a fully-operational Galaxy instance with pre-installed demonstration material for CRAVAT-P." -image: "/src/use/cravat-p/cravat-p-landing-500.png" +image: "/use/cravat-p/cravat-p-landing-500.png" comments: - "The [CRAVAT-P Galaxy Docker instance](https://jraysajulga.github.io/cravatp-galaxy-docker/) includes a Galaxy Instance (version 17.09); CRAVAT-P submit, intersect, annotate, and retrieve Galaxy tool; CRAVAT-P visualization plugin; input files (i.e., VCF and proBED files); and a basic CRAVAT-P workflow." user_support: diff --git a/content/use/dintor/index.md b/content/use/dintor/index.md index 14966e8452..4437c62d50 100644 --- a/content/use/dintor/index.md +++ b/content/use/dintor/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Dintor: Data Integrator Tool Suite" platform_location: US summary: "GWA and NGS tools and modules for functional annotation of genes and gene products " -image: "/src/use/dintor/dintor.png" +image: "/use/dintor/dintor.png" comments: - 'A "suite of tools that facilitate working with GWA and NGS data" and "offers modules for high level functional annotation of genes and gene products such as gene set prioritization, functional similarity of proteins, or clinical significance of variation data. Each of these tools has been designed to perform a basic task independently."' - 'Includes "more than thirty modules ready for use by bioinformaticians and biologists working in genomics research."' diff --git a/content/use/ecology/index.md b/content/use/ecology/index.md index f7d1532d87..fa86b22707 100644 --- a/content/use/ecology/index.md +++ b/content/use/ecology/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Ecology for Galaxy Server" platform_location: DE summary: "A web platform to get, process, analyze and visualize ecological data" -image: "/src/use/ecology/map-prediction-500.png" +image: "/use/ecology/map-prediction-500.png" comments: - "Get Ecological data: Get species occurrence data, protocoled data from Vigie-Nature, climatic data from Worldclim" - "Graph / Display Ecological data: Compare sites" diff --git a/content/use/ena-submission/index.md b/content/use/ena-submission/index.md index 3d7a459bcd..7ecacae5ae 100644 --- a/content/use/ena-submission/index.md +++ b/content/use/ena-submission/index.md @@ -7,7 +7,7 @@ platforms: platform_url: "https://quay.io/repository/galaxy/ena-upload?tag=latest&tab=tags" platform_text: "Epigenomics Galaxy Docker Image" summary: "Galaxy Docker image for submitting SARS-CoV-2 data to ENA" -image: "/src/images/logos/ena-logo-horiz-small.png" +image: "/images/logos/ena-logo-horiz-small.png" comments: - "ELIXIR Belgium has developed a Galaxy tool for submission of SARS-Cov-2 genetic sequences and associated metadata to the [European Nucleotide Archive (ENA)](https://www.ebi.ac.uk/ena/browser/home)" user_support: diff --git a/content/use/epigeec/index.md b/content/use/epigeec/index.md index edd12924f5..38a2e2aec9 100644 --- a/content/use/epigeec/index.md +++ b/content/use/epigeec/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "epiGeEC server" platform_location: CA summary: "Compare user-provided epigenomic datasets with thousands of public datasets." -image: "/src/use/epigeec/epigeec-heatmap.png" +image: "/use/epigeec/epigeec-heatmap.png" comments: - "This epiGeEC server is designed to compare user-provided epigenomic datasets with thousands of public datasets in a few minutes. It can also be used to directly compare user’s datasets." - "This public Galaxy framework is provided by the Genetics and genomics Analysis Platform (GenAP) project, thereby leveraging Compute Canada advanced research computing infrastructure." diff --git a/content/use/ewas-galaxy/index.md b/content/use/ewas-galaxy/index.md index 0631eaada9..6ecdb91a8c 100644 --- a/content/use/ewas-galaxy/index.md +++ b/content/use/ewas-galaxy/index.md @@ -7,7 +7,7 @@ platforms: platform_url: "https://github.com/kpbioteam/docker_ewas" platform_text: "EWAS-Galaxy Docker Image" summary: "Galaxy Docker image for population epigenetics data analysis" -image: "/src/images/logos/DockerInGalaxy.png" +image: "/images/logos/DockerInGalaxy.png" comments: - "Epigenome-wide association studies (EWAS) analyse genome-wide activity of epigenetic marks in cohorts of different individuals to find associations between epigenetic variation and phenotype." user_support: diff --git a/content/use/exome-seq/index.md b/content/use/exome-seq/index.md index 9077745d4c..719796f616 100644 --- a/content/use/exome-seq/index.md +++ b/content/use/exome-seq/index.md @@ -7,7 +7,7 @@ platforms: platform_url: "https://hub.docker.com/r/bgruening/galaxy-exome-seq/" platform_text: "Galaxy Exome-Seq Docker" summary: "Galaxy Docker repository for Exome sequencing data analysis" -image: "/src/images/logos/DockerInGalaxy.png" +image: "/images/logos/DockerInGalaxy.png" comments: - "Galaxy in Docker for Exome-Seq." user_support: diff --git a/content/use/freebioinfo/index.md b/content/use/freebioinfo/index.md index 478c5ba202..7b0207159a 100644 --- a/content/use/freebioinfo/index.md +++ b/content/use/freebioinfo/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "FreeBionfo Galaxy Server" platform_location: CN summary: "Galaxy for metagenomic analysis." -image: "/src/use/freebioinfo/freebioinfologo.jpg" +image: "/use/freebioinfo/freebioinfologo.jpg" comments: - "Includes a wide range of metagenomics and other tools" user_support: diff --git a/content/use/g-onramp/index.md b/content/use/g-onramp/index.md index 561738c3fd..a70d341ba1 100644 --- a/content/use/g-onramp/index.md +++ b/content/use/g-onramp/index.md @@ -10,7 +10,7 @@ platforms: platform_url: "https://launch.usegalaxy.org/catalog" platform_text: "G-OnRamp AMI" summary: "G-OnRamp provides a user-friendly, web-based platform for collaborative, end-to-end annotation of eukaryotic genomes using UCSC Assembly Hubs and JBrowse/Apollo genome browsers with evidence tracks derived from sequence alignments, ab initio gene predictors, RNA-Seq data, and repeat finders." -image: "/src/images/logos/g-onramp-logo-trans.png" +image: "/images/logos/g-onramp-logo-trans.png" comments: - "use the G-OnRamp output to visualize large genomics datasets, and can utilize the output to drive collaborative genome annotation projects in both research and educational settings" - "[Deployment options](http://gonramp.wustl.edu/?page_id=1031)" diff --git a/content/use/galaxeast/index.md b/content/use/galaxeast/index.md index fb2d707686..39018daccc 100644 --- a/content/use/galaxeast/index.md +++ b/content/use/galaxeast/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "GalaxEast" platform_location: FR summary: "Integrative 'omics data analysis " -image: "/src/use/galaxeast/galaxeast.png" +image: "/use/galaxeast/galaxeast.png" comments: - "[Request an account](http://wiki.galaxeast.fr/doku.php?id=request:account)" - "Provides access to up-to-date tools and algorithms such as those devoted to Next Generation Sequencing (NGS) data analysis of: 1) Epigenome: MACS, Homer; 2) Genomic sequence: GATK, Samtools, BEDtools, Picard; 3) Transcriptome: Cufflinks, HTSeq, TopHat; 4) Statistical analyses: DeepTools, S-mart, DESeq" diff --git a/content/use/galaxy-africa/index.md b/content/use/galaxy-africa/index.md index 34342efd4e..9a4af4509e 100644 --- a/content/use/galaxy-africa/index.md +++ b/content/use/galaxy-africa/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Galaxy Africa Server" platform_location: DE summary: "Devoted to assisting researchers on the African continent accelerate their genomics research and analyses." -image: "/src/images/galaxy-logos/galaxy-africa-logo-300.png" +image: "/images/galaxy-logos/galaxy-africa-logo-300.png" comments: - "The public server is configured by the Galaxy Africa team, and hosted by the UesGalaxy.eu team." user_support: diff --git a/content/use/galaxy-docker/index.md b/content/use/galaxy-docker/index.md index 729bc5e8fa..f2fab70b63 100644 --- a/content/use/galaxy-docker/index.md +++ b/content/use/galaxy-docker/index.md @@ -7,7 +7,7 @@ platforms: platform_url: "https://github.com/bgruening/docker-galaxy-stable" platform_text: "Galaxy Docker Image" summary: "The Galaxy Docker Image is an easy distributable full-fledged Galaxy installation, that can be used for testing, teaching and presenting new tools and features." -image: "/src/use/galaxy-docker/galaxy-docker-chart-600.png" +image: "/use/galaxy-docker/galaxy-docker-chart-600.png" comments: - "The Image is based on [Ubuntu 14.04 LTS](http://releases.ubuntu.com/14.04/) and all recommended Galaxy requirements are installed. The following chart should illustrate the Docker image hierarchy we have build to make is as easy as possible to build on different layers of our stack and create many exciting Galaxy flavors." user_support: diff --git a/content/use/galaxy-genouest/index.md b/content/use/galaxy-genouest/index.md index 28515a4e2e..76f92b425b 100644 --- a/content/use/galaxy-genouest/index.md +++ b/content/use/galaxy-genouest/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Galaxy@GenOuest" platform_location: FR summary: "A general purpose Galaxy server Includes tools developped by [Dyliss](http://www.irisa.fr/dyliss/) and [GenScale](https://team.inria.fr/genscale/) bioinformatics research teams in Rennes, France. " -image: "/src/use/galaxy-genouest/galaxy-genouest.png" +image: "/use/galaxy-genouest/galaxy-genouest.png" comments: - "[Request a GenOuest account](https://my.genouest.org)" user_support: diff --git a/content/use/galaxy-india/index.md b/content/use/galaxy-india/index.md index e7c7a4f4c4..cc8931631d 100644 --- a/content/use/galaxy-india/index.md +++ b/content/use/galaxy-india/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Galaxy India Server" platform_location: DE summary: "This is the Indian galaxy server, Welcome Home!" -image: "/src/images/galaxy-logos/galaxy-india-logo.png" +image: "/images/galaxy-logos/galaxy-india-logo.png" comments: - "Namaste All! Welcome to the India Galaxy workbench; a comprehensive set of tools and workflows dedicated to accelerate your bioinformatics analyses focusing Bharat." - "This workbench is built on the Galaxy framework thanks to Galaxy Europe we are hosting the seeds of Indian Galaxy to facilitate more wider user base." diff --git a/content/use/galaxy-integrated-omics-gio/index.md b/content/use/galaxy-integrated-omics-gio/index.md index 523b9df324..8e0f394d87 100644 --- a/content/use/galaxy-integrated-omics-gio/index.md +++ b/content/use/galaxy-integrated-omics-gio/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "GIO Server" platform_location: UK summary: "Proteomics Informed by Transcriptomics (PIT) methodology, and selection of surrogate peptides for targeted proteomics. " -image: "/src/use/galaxy-integrated-omics-gio/gio-logo.png" +image: "/use/galaxy-integrated-omics-gio/gio-logo.png" comments: - "Proteomics Informed by Transcriptomics (PIT) methodology is described in [Evans et al. 2012](http://www.ncbi.nlm.nih.gov/pubmed/23142869)" - "Galaxy-based Integrated Omics (GIO) is a curated collection of new and pre-existing open source tools brought together for proteomics applications." diff --git a/content/use/galaxy-p/index.md b/content/use/galaxy-p/index.md index 741161aa2c..2c0a3646f5 100644 --- a/content/use/galaxy-p/index.md +++ b/content/use/galaxy-p/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Use Galaxy-P" platform_location: US summary: "Galaxy-P is a multiple 'omics' data analysis platform with particular emphasis on mass spectrometry based proteomics. Galaxy-P is developed at the [University of Minnesota](http://umn.edu/), deployed at the [Minnesota Supercomputing Institute](http://msi.umn.edu/)." -image: "/src/use/galaxy-p/get-galaxy-p-home.png" +image: "/use/galaxy-p/get-galaxy-p-home.png" comments: - "[usegalaxyp.org](http://galaxyp.org/) is meant to be a resource for training and sharing workflows with the community. It contains workflows and small-scale testing data. The site is not meant to be a production instance for large-scale data, and any accounts and data created here are temporary. The [Galaxy-P team](http://galaxyp.org/) collaborates with Galaxy developers around the world including the European Galaxy Community. and Australian Galaxy Community. Users are recommended to use [usegalaxy.eu](http://usegalaxy.eu/) as an alternative server to run your analyses." - "[Galaxy-P presentations and posters](http://galaxyp.org/conference-presentations/)" diff --git a/content/use/galaxy-pasteur/index.md b/content/use/galaxy-pasteur/index.md index 5a0e22f0c9..7788a05e63 100644 --- a/content/use/galaxy-pasteur/index.md +++ b/content/use/galaxy-pasteur/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Galaxy@Pasteur" platform_location: FR summary: "General purpose genomics analysis server. " -image: "/src/use/galaxy-pasteur/pasteur-300.png" +image: "/use/galaxy-pasteur/pasteur-300.png" comments: - "Provides a wide range of tools to the scientific community, including tools that have been created at the Institut Pasteur i.e. [TXSScan](https://doi.org/10.1038/srep23080), [alienTrimmer](https://doi.org/10.1016/j.ygeno.2013.07.011), [PhageTerm](https://doi.org/10.1101/108100), [SARTools Deseq2](https://doi.org/10.1371/journal.pone.0157022) ..." - "This server is also the workflow execution and analysis engine for the [NGPhylogeny.fr](/use/ngphylogeny/), [ARIAweb](/use/ariaweb/), and [SHAMAN](/use/shaman/) servers. None of them looks like Galaxy, but they use the Galaxy@Pasteur server for data analysis and workflow execution. " diff --git a/content/use/galaxy-prabi/index.md b/content/use/galaxy-prabi/index.md index 7d6d787c43..7a07e3d057 100644 --- a/content/use/galaxy-prabi/index.md +++ b/content/use/galaxy-prabi/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Galaxy@PRABI" platform_location: FR summary: "Includes bioinformatics tools developed by the research teams working in the perimeter of the PRABI core facility, including *kissplice/kissDE, TETools, SEX-DETector,* and *priam*." -image: "/src/images/logos/PRABILogo.png" +image: "/images/logos/PRABILogo.png" comments: - '"A general purpose Galaxy instance that includes bioinformatics tools developed by the research teams working in the perimeter of the PRABI core facility, including *kissplice/kissDE, TETools, SEX-DETector,* and *priam* available [through our local toolshed instance](http://toolshed.prabi.fr)."' - "Dedicated server: PowerEdge R920 Rack Server - 64 CPU, 512 GB RAM, 15To GB of disk space." diff --git a/content/use/galaxy-slu/index.md b/content/use/galaxy-slu/index.md index 48d6595f7e..5118ea262e 100644 --- a/content/use/galaxy-slu/index.md +++ b/content/use/galaxy-slu/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Galaxy@SLU" platform_location: US summary: "Standard and custom-built bioinformatics tools with special focus on ChIP-Seq, RNA-Seq, single-cell RNA-Seq, Gene Expression and Cancer Genomics (e.g. TCGA). " -image: "/src/images/logos/slu-left-blue.png" +image: "/images/logos/slu-left-blue.png" comments: - "Galaxy@SLU aims to provide standard and custom-built bioinformatics tools with special focus on ChIP-Seq, RNA-Seq, Gene Expression and Cancer Genomics." user_support: diff --git a/content/use/galaxy-test/index.md b/content/use/galaxy-test/index.md index 7b2847fc2f..39ff068009 100644 --- a/content/use/galaxy-test/index.md +++ b/content/use/galaxy-test/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Galaxy Test" platform_location: US summary: "Beta version of Galaxy Main " -image: "/src/use/galaxy-test/galaxy-test-300.png" +image: "/use/galaxy-test/galaxy-test-300.png" comments: - "[Beta version](/test/) of Galaxy [Main](/main/)" - "Not stable or persistent. See [Test](/test/) for more." diff --git a/content/use/gcac/index.md b/content/use/gcac/index.md index 70106b55fa..d4427a0547 100644 --- a/content/use/gcac/index.md +++ b/content/use/gcac/index.md @@ -11,7 +11,7 @@ platforms: platform_url: "https://drive.google.com/file/d/1ZQM5x-9J49rvPy9SoWOrM3Xm1MHZdr1I/view?usp=sharing" platform_text: "GCAC VM" summary: "GCAC is a web enabled platform for predictive model building using R and caret package for virtual screening." -image: "/src/use/gcac/gcac-landing.png" +image: "/use/gcac/gcac-landing.png" comments: - "The GCAC is a one stop solution for data generation, data preparation, feature selection, model building, prediction and retrival of potential lead molecules." - "GCAC is available as a public server, a virtual machine, and as a [tool suite in the Galaxy Toolshed](https://toolshed.g2.bx.psu.edu/repository?repository_id=351af44ceb587e54)." diff --git a/content/use/genap/index.md b/content/use/genap/index.md index beb4c99a6a..85f7d5c71b 100644 --- a/content/use/genap/index.md +++ b/content/use/genap/index.md @@ -8,7 +8,7 @@ platforms: platform_url: "https://www.genap.ca/" platform_text: "Canada: GenAP Cloud Service" summary: "All Canadian researchers are [eligible for a GenAP account](https://ccdb.computecanada.ca/account_application). International researchers that have a Canadian collaborator can also be sponsored and become eligible to a GenAP account as well." -image: "/src/use/genap/genap-logo-trans-250.png" +image: "/use/genap/genap-logo-trans-250.png" comments: - "[GenAP](https://www.genap.ca/) is targeting both life scientists through web portal applications such as Galaxy, datahub, and a UCSC Genome Browser mirror to facilitate data analysis, sharing and visualization of the results; as well as computational biologists through services such as state-of-the-art analysis pipelines and centralized code distribution." - "In GenAP each PI's (Principal Investigator) project can instantiate a private Galaxy which is shared only within his/her own group. The group admin has the ability to create, start, stop and delete the group's Galaxy." diff --git a/content/use/genelab/index.md b/content/use/genelab/index.md index bd8069ce6c..b2fd4987f0 100644 --- a/content/use/genelab/index.md +++ b/content/use/genelab/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "GeneLab" platform_location: US summary: "NASA GeneLab is a comprehensive space-related omics database in which users can upload, download, share, store, and analyze spaceflight and corresponding model organism data." -image: "/src/use/genelab/genelab-patch.png" +image: "/use/genelab/genelab-patch.png" comments: - "Bioinformatics software platform (powered by Galaxy), including tools for performing sequence data processing, and differential gene expression and epigenetic analyses." user_support: diff --git a/content/use/genomic-hyperbrowser/index.md b/content/use/genomic-hyperbrowser/index.md index 2492823dff..2b98707ca2 100644 --- a/content/use/genomic-hyperbrowser/index.md +++ b/content/use/genomic-hyperbrowser/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Genomic Hyperbrowser" platform_location: NO summary: "Statistical methodology and computing power to handle a variety of biological inquires on genomic datasets " -image: "/src/use/genomic-hyperbrowser/genomic-hyperbrowser.png" +image: "/use/genomic-hyperbrowser/genomic-hyperbrowser.png" comments: - "The GSuite HyperBrowser system includes a range of tools to handle acquisition, processing and analysis of collections of genomic tracks, represented in a simple tabular format, GSuite. Please proceed in either basic or advanced mode." - "The Genomic HyperBrowser (which includes the GSuite HyperBrowser) is a service from ELIXIR - provided by [ELIXIR Norway](https://www.elixir-norway.org/)." diff --git a/content/use/gga/index.md b/content/use/gga/index.md index cc659e9033..e393275fae 100644 --- a/content/use/gga/index.md +++ b/content/use/gga/index.md @@ -11,7 +11,7 @@ platforms: platform_url: "https://hub.docker.com/r/bgruening/galaxy-genome-annotation/" platform_text: "Galaxy for Genome Annotation Docker" summary: "Galaxy for genome annotation" -image: "/src/use/gga/gga-logo-trans.png" +image: "/use/gga/gga-logo-trans.png" comments: - "A complete Galaxy instance for Genome Annotation." user_support: diff --git a/content/use/gigagalaxy/index.md b/content/use/gigagalaxy/index.md index c1788b8442..766226a405 100644 --- a/content/use/gigagalaxy/index.md +++ b/content/use/gigagalaxy/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "GigaGalaxy" platform_location: HK summary: "GigaGalaxy hosts tools and data analyses from papers published in *[GigaScience](http://www.gigasciencejournal.com/)*." -image: "/src/use/gigagalaxy/gigagalaxy-nebula.png" +image: "/use/gigagalaxy/gigagalaxy-nebula.png" comments: - "Standard Galaxy tools set plus SOAPdenovo and SOAPsnp for *de novo* assembly and SNP calling." user_support: diff --git a/content/use/globus-genomics/index.md b/content/use/globus-genomics/index.md index ecd86be192..ec3eb14a98 100644 --- a/content/use/globus-genomics/index.md +++ b/content/use/globus-genomics/index.md @@ -13,7 +13,7 @@ platforms: platform_text: "Globus Genomics" platform_location: US summary: "Globus Genomics provides hardened high-performance Galaxy servers running with Globus on AWS." -image: "/src/use/globus-genomics/globus-genomics-logo.png" +image: "/use/globus-genomics/globus-genomics-logo.png" comments: - "Data transfer, sharing, and management is powered by [Globus](https://www.globus.org/research-data-management-simplified)." - "Computation is built on Amazon Web Services." diff --git a/content/use/graphclust/index.md b/content/use/graphclust/index.md index bb54b14812..5013d1f2e5 100644 --- a/content/use/graphclust/index.md +++ b/content/use/graphclust/index.md @@ -11,7 +11,7 @@ platforms: platform_url: "https://hub.docker.com/r/backofenlab/docker-galaxy-graphclust" platform_text: "Docker" summary: "[GraphClust2](https://github.com/BackofenLab/GraphClust-2) is a workflow for scalable clustering of RNAs based on sequence and secondary structures feature. GraphClust2 is implemented within the Galaxy framework and consists a set of integrated Galaxy tools and flavors of the linear-time clustering workflow." -image: "/src/use/graphclust/graphclust-pipeline.png" +image: "/use/graphclust/graphclust-pipeline.png" comments: - "The public server is hosted by the UesGalaxy.eu team." user_support: diff --git a/content/use/grappa/index.md b/content/use/grappa/index.md index 0b16fa5a47..6b830a195f 100644 --- a/content/use/grappa/index.md +++ b/content/use/grappa/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Graph Algorithms Pipeline for Pathway Analysis (GrAPPA) Server" platform_location: US summary: "GrAPPA is a web-based interface constructed on the Galaxy framework for graph theoretical tools. It contains novel combinatorial methods integrated into a complete microarray analysis toolchain, from uploading raw high-throughput data to visualization of results. " -image: "/src/use/grappa/grappa-logo.png" +image: "/use/grappa/grappa-logo.png" comments: - "Efforts to increase GrAPPA’s functionality are underway. Features now being incorporated include a larger repertoire of pre-processing options, including Gaussian graphical models and an expanded set of correlation metrics such as mutual information; more powerful post-processing capabilities, for example, software tools for Bayesian analysis; and links to related web-centric resources, e.g. GeneWeaver, so that users can seamlessly transfer data and results" user_support: diff --git a/content/use/halogen-bonding/index.md b/content/use/halogen-bonding/index.md index e1fce2eb30..8467f892c5 100644 --- a/content/use/halogen-bonding/index.md +++ b/content/use/halogen-bonding/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Halogen Bonding Galaxy Server" platform_location: DE summary: "Visualize halogen bond contacts in the protein binding site. Analyze a protein binding site for halogen bonding hotspots. Evaluate halogen contacts with the protein backbone using the scoring function XBScore." -image: "/src/use/halogen-bonding/halogen-bonding.png" +image: "/use/halogen-bonding/halogen-bonding.png" comments: - "[Halogen Bonding project home](http://halogenbonding.com/) Supports visualizations (halogen bond spheres) for: the protein backbone (spherical scans and planar scans), methionine, and histidine." user_support: diff --git a/content/use/hardwood-genomics/index.md b/content/use/hardwood-genomics/index.md index 1fb27d6907..529d73483a 100644 --- a/content/use/hardwood-genomics/index.md +++ b/content/use/hardwood-genomics/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Hardwood Genomics" platform_location: US summary: "A simplified, workflow-centic interface to Galaxy, focused on genomics data from hardwood trees." -image: "/src/use/hardwood-genomics/hardwood-geonomics-logo.jpg" +image: "/use/hardwood-genomics/hardwood-geonomics-logo.jpg" comments: - "[Register for an account](https://www.hardwoodgenomics.org/user/register)" - "Workflows for quality control, short read mapping, functional gene annotation, RNA-Seq differential gene expression and variant analysis." diff --git a/content/use/hic-explorer/index.md b/content/use/hic-explorer/index.md index c77e9a84fb..4613f5d8fb 100644 --- a/content/use/hic-explorer/index.md +++ b/content/use/hic-explorer/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Public server hosted by usegalaxy.eu" platform_location: DE summary: "Tools to process and visualize chromosome conformation." -image: "/src/use/hic-explorer/hic.png" +image: "/use/hic-explorer/hic.png" comments: - "Galaxy HiCExplorer is a web server that facilitates the study of the 3D conformation of chromatin by allowing diff --git a/content/use/human-cell-atlas/index.md b/content/use/human-cell-atlas/index.md index 938674484d..b69d187b43 100644 --- a/content/use/human-cell-atlas/index.md +++ b/content/use/human-cell-atlas/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Human Cell Atlas Galaxy" platform_location: DE summary: "Tools and workflows for the analysis of Single Cell RNA-Seq data. It includes a module that connects to the Matrix Service API of the [Human Cell Atlas](https://www.humancellatlas.org/)’s Data Coordination Platform that enables retrieval of gene expression matrices from any data sets in the Human Cell Atlas." -image: "/src/images/logos/human-cell-atlas-logo.png" +image: "/images/logos/human-cell-atlas-logo.png" comments: - "This setup aims to give users access to as much granularity as possible in terms of the downstream analysis steps provided by the major software for single cell data analysis: Scanpy, SC3, Scater and Seurat. For each of these tools, this Galaxy instance has decomposed modules for each the main functionalities: ingestion from 10x/loom, filtering (by cells or genes), scaling, normalisation, clustering, marker genes, and dimensionality reduction, among others. In the short term we expect to have interoperability between these tools through the Loom exchange format. Additionally, we provide specialised viewers for single cell clustering data: UCSC CellBrowser (currently active) and cellxgene (coming up soon)." - "The public server is hosted by the UesGalaxy.eu team." diff --git a/content/use/huttenhower-lab/index.md b/content/use/huttenhower-lab/index.md index ed289479b8..644d267918 100644 --- a/content/use/huttenhower-lab/index.md +++ b/content/use/huttenhower-lab/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Huttenhower Lab" platform_location: US summary: "metagenomic and functional genomic analyses, intended for research and academic use " -image: "/src/use/huttenhower-lab/huttenhower-lab.png" +image: "/use/huttenhower-lab/huttenhower-lab.png" comments: - "Implements ..." - "LEfSe - LDA Effect Size" diff --git a/content/use/hyphy/index.md b/content/use/hyphy/index.md index 6bc316d13e..0c8f24ee72 100644 --- a/content/use/hyphy/index.md +++ b/content/use/hyphy/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "HyPhy HIV tools server" platform_location: US summary: "Tools for HIV sequencing analysis." -image: "/src/use/hyphy/galaxy-hiv.png" +image: "/use/hyphy/galaxy-hiv.png" comments: - "Hypothesis Testing using Phylogenies" - "Comparative sequence analysis using stochastic evolutionary models" diff --git a/content/use/ibers-aberystwyth/index.md b/content/use/ibers-aberystwyth/index.md index 94e90b0140..154f81f576 100644 --- a/content/use/ibers-aberystwyth/index.md +++ b/content/use/ibers-aberystwyth/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "IBERS @ Aberystwyth Galaxy" platform_location: UK summary: "Software, tools and pages written by IBERS researchers for release to the wider community. " -image: "/src/use/ibers-aberystwyth/ibers.gif" +image: "/use/ibers-aberystwyth/ibers.gif" comments: - "Implements the [DISMISS package](http://link.springer.com/article/10.1186/s12859-016-1158-7) for detection of stranded methylation in MeDIP-Seq data." user_support: diff --git a/content/use/idenap/index.md b/content/use/idenap/index.md index 3f8facb7dd..03cc8f98d7 100644 --- a/content/use/idenap/index.md +++ b/content/use/idenap/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "IDENAP" platform_location: CN summary: "Inter-Domain Ecological Network Analysis Pipeline" -image: "/src/use/idenap/idenap-workflow.png" +image: "/use/idenap/idenap-workflow.png" comments: - "Model, analyze and manage the Inter-Domain Ecological Networks (IDENs) from metagenomic datasets, e.g. GeoChip and Sequencing, and synchronous plant surveys." user_support: diff --git a/content/use/immport-galaxy/index.md b/content/use/immport-galaxy/index.md index ec956825bb..1c988554a7 100644 --- a/content/use/immport-galaxy/index.md +++ b/content/use/immport-galaxy/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "ImmPort Galaxy" platform_location: US summary: "Flow Cytometry Analysis. " -image: "/src/use/immport-galaxy/immport.png" +image: "/use/immport-galaxy/immport.png" comments: - "[ImmPort Galaxy](https://www.immportgalaxy.org/) hosts [ImmPort](http://www.immport.org/)'s flow analysis tools." - "See [FlowGalaxy: Developing a workflow for Flow Cytometry Analysis in Galaxy](http://sched.co/745G), presented by [Cristel Thomas](http://twitter.com/crstlthms) at [GCC2016](https://gcc16.sched.org/)." diff --git a/content/use/jetstream/index.md b/content/use/jetstream/index.md index 43dbed2558..e3928d8c59 100644 --- a/content/use/jetstream/index.md +++ b/content/use/jetstream/index.md @@ -8,7 +8,7 @@ platforms: platform_url: "http://jetstream-cloud.org/" platform_text: "Jetstream" summary: '[Jetstream](http://jetstream-cloud.org/) is part of [XSEDE](https://www.xsede.org/), a "collection of integrated advanced digital resources and services" and is funded by NSF.' -image: "/src/images/logos/JetstreamRectClipped.jpg" +image: "/images/logos/JetstreamRectClipped.jpg" comments: - 'You need to be eligible for an [XSEDE allocation](https://portal.xsede.org/allocation-policies) to use Jetstream, which means must be based at a U.S. institution. And although XSEDE is NSF-funded, "projects need not be supported by NSF grants" to receive an allocation.' - "Jetstream enables researchers to launch, use, and shutdown their own Galaxy servers that have been pre-configured similar to the [Main Galaxy server](https://usegalaxy.org/). If you want to further customize your launched server you can [become an administrator](/cloud/jetstream/ssh/#adding-galaxy-admin-user) and even [access the server from the shell](/cloud/jetstream/ssh/)." diff --git a/content/use/langille-lab/index.md b/content/use/langille-lab/index.md index fb270a0871..a6159a8543 100644 --- a/content/use/langille-lab/index.md +++ b/content/use/langille-lab/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Langille Lab PICRUSt server" platform_location: CA summary: "Prediction of the unobserved character states in a community of organisms from phylogenetic information." -image: "/src/use/langille-lab/picrust-workflow-450.jpg" +image: "/use/langille-lab/picrust-workflow-450.jpg" comments: - "PICRUSt is a bioinformatics software package designed to predict metagenome functional content from marker gene (e.g., 16S rRNA) surveys and full genomes." user_support: diff --git a/content/use/lapps-grid/index.md b/content/use/lapps-grid/index.md index 7fcc3c6ef0..323ae48fe2 100644 --- a/content/use/lapps-grid/index.md +++ b/content/use/lapps-grid/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "LAPPS Grid Galaxy Workflow Engine" platform_location: NO summary: "An open, interoperable web service platform for natural language processing (NLP) research and development. " -image: "/src/use/lapps-grid/lapps-grid.png" +image: "/use/lapps-grid/lapps-grid.png" comments: - "[Language Application Grid](http://www.lappsgrid.org/)" - "The LAPPS Grid provides facilities to select from hundreds of NLP tools to create workflows, composite services, and applications, and to evaluate, reproduce, and share them with others." diff --git a/content/use/lebanese-university/index.md b/content/use/lebanese-university/index.md index 11ae6e7cee..f8eb65fd5d 100644 --- a/content/use/lebanese-university/index.md +++ b/content/use/lebanese-university/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Lebanese University Galaxy" platform_location: LB summary: "Includes the SpCLUST tool set for fast and reliable clustering of potentially divergent biological sequences" -image: "/src/use/lebanese-university/lebanese-university-logo.jpg" +image: "/use/lebanese-university/lebanese-university-logo.jpg" comments: - "Also supports the CD-Hit and DNAClust tool sets." user_support: diff --git a/content/use/lifeportal-oslo/index.md b/content/use/lifeportal-oslo/index.md index a750cfb669..e7d3b21b3e 100644 --- a/content/use/lifeportal-oslo/index.md +++ b/content/use/lifeportal-oslo/index.md @@ -9,7 +9,7 @@ platforms: platform_text: "Server" platform_location: NO summary: "a Galaxy instance to satisfy the computational needs of the Norwegian research community in life sciences but also of any other user willing to use the service." -image: "/src/use/lifeportal-oslo/lifeportal.png" +image: "/use/lifeportal-oslo/lifeportal.png" comments: - "implements about 400 applications. It runs Galaxy version 18.09 and jobs are executed on the [Abel cluster](https://www.uio.no/english/services/it/research/hpc/abel/more/) (~650 nodes) using the slurm-drmaa library." - "We have tailored our application set to run either locally, or on the cluster with regard to the requested resources for the job. Resources (memory, walltime, number of tasks, number of cpus) are allocated on a per job basis which gives an exceptional flexibility to use and save requested resources. The instance is among the few in the world implementing a resource allocation management system plugged into Galaxy (and Galaxy GUI) which reserves, charges and refunds the user accounts after each executed job." diff --git a/content/use/lisis/index.md b/content/use/lisis/index.md index 7623d21be2..42189e2bcc 100644 --- a/content/use/lisis/index.md +++ b/content/use/lisis/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "LiSIs" platform_location: CY summary: "A platform for Virtual Screening. " -image: "/src/images/logos/LiSisLogo.png" +image: "/images/logos/LiSisLogo.png" comments: - "The LiSIs platform has been developed in the context of the cross-disciplinary [GRANATUM project](http://www.granatum.org) aiming to bridge the gap between biomedical researchers by ensuring their seamless access to the globally available information needed to perform complex experiments and to conduct studies on large-scale datasets." user_support: diff --git a/content/use/majewski-lab/index.md b/content/use/majewski-lab/index.md index 835682ce9b..e41d8ff20d 100644 --- a/content/use/majewski-lab/index.md +++ b/content/use/majewski-lab/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Majewski Lab ExomeAI Server" platform_location: CA summary: "Detection of recurrent Allelic Imbalance in tumors using whole Exome sequencing data. " -image: "/src/use/majewski-lab/mcgill-qgic.png" +image: "/use/majewski-lab/mcgill-qgic.png" comments: - "ExomeAI is a free web-based application for detection of recurrent AI/LOH segments in Tumor samples." user_support: diff --git a/content/use/mandoiu/index.md b/content/use/mandoiu/index.md index ebf0870a2b..894575fa48 100644 --- a/content/use/mandoiu/index.md +++ b/content/use/mandoiu/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Mandoiu Lab" platform_location: US summary: "A customized installation of the Galaxy framework deploying bioinformatic tools and pipelines developed in the [Mandoiu Lab](http://dna.engr.uconn.edu/) at the [University of Connecticut](http://www.uconn.edu/) for high-throughput sequencing and immunogenomics data analysis" -image: "/src/use/mandoiu/mandoiu-landing-500.png" +image: "/use/mandoiu/mandoiu-landing-500.png" comments: - "Source code and relevant publications for these and other tools developed in the lab are available on the lab software page. " user_support: diff --git a/content/use/martin-luther-u-halle-wittenberg/index.md b/content/use/martin-luther-u-halle-wittenberg/index.md index f7af1431a7..3a868ebeb2 100644 --- a/content/use/martin-luther-u-halle-wittenberg/index.md +++ b/content/use/martin-luther-u-halle-wittenberg/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Martin Luther University Halle-Wittenberg" platform_location: DE summary: "Provides implementations of [GeMoMa](http://www.jstacs.de/index.php/GeMoMa), InMoDe, CRISPRer, TALgetter, TALgetterLong, TALENoffer, and Dimont " -image: "/src/images/logos/MartinLutherU.png" +image: "/images/logos/MartinLutherU.png" comments: - "Provides implementations of these tools:" - "InMoDe is a collection of Tools for learning and visualizing inhomogeneous parsimonious Markov models (iPMMs)." diff --git a/content/use/metacentrum/index.md b/content/use/metacentrum/index.md index b63cb70e2c..544df4204c 100644 --- a/content/use/metacentrum/index.md +++ b/content/use/metacentrum/index.md @@ -9,7 +9,7 @@ platforms: platform_text: "Czech National Grid Infrastructure (NGI)" platform_location: CZ summary: "MetaCentrum regional virtual organization of the Czech National Grid Infrastructure (NGI) and is accessible to employees and students of research and academic organizations of the Czech Republic and for scientific purposes only." -image: "/src/use/metacentrum/metacentrum-logo.png" +image: "/use/metacentrum/metacentrum-logo.png" comments: - "[Register for an account](https://metavo.metacentrum.cz/en/application/index.html)" user_support: diff --git a/content/use/metagenomics/index.md b/content/use/metagenomics/index.md index a72bbedc48..3878173f3b 100644 --- a/content/use/metagenomics/index.md +++ b/content/use/metagenomics/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Server" platform_location: DE summary: "a webserver to process, analyse and visualize Metagenomic and Microbiota data in general." -image: "/src/use/asaim/asaim-figure1.png" +image: "/use/asaim/asaim-figure1.png" comments: - "More than 200 tools are integrated in this custom Galaxy instance. They were chosen for their use in exploitation of microbiota data." - "The public server is hosted by the UseGalaxy.eu team." diff --git a/content/use/metaproteomics-gateway/index.md b/content/use/metaproteomics-gateway/index.md index cc8fc5d135..5829536349 100644 --- a/content/use/metaproteomics-gateway/index.md +++ b/content/use/metaproteomics-gateway/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Galaxy-P Metaproteomics Gateway" platform_location: US summary: "Metaproteomics gateway providing access to documentation and other instructional materials, and an opportunity for hands-on training using example datasets and optimized metaproteomics workflows" -image: "/src/use/metaproteomics-gateway/metaproteomics-gateway-landing-400.png" +image: "/use/metaproteomics-gateway/metaproteomics-gateway-landing-400.png" comments: - "The main goal of this server is to provide documentation to facilitate training and mastery of these software and workflows." user_support: diff --git a/content/use/mimodd-nacreousmap/index.md b/content/use/mimodd-nacreousmap/index.md index 36b3b74746..515bbead63 100644 --- a/content/use/mimodd-nacreousmap/index.md +++ b/content/use/mimodd-nacreousmap/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "MiModD NacreousMap" platform_location: DE summary: "NacreousMap mapping/plotting tool of MiModD for users of MiModD who do not want to install the required dependencies (R and rpy2) for graphical output from this tool on their local system. " -image: "/src/use/mimodd-nacreousmap/baumeister.png" +image: "/use/mimodd-nacreousmap/baumeister.png" comments: - "[MiModD](http://www.celegans.de/en/mimodd) is a comprehensive software package for the identification and annotation of mutations in the genomes of model organisms from whole-genome sequencing (WGS) data." - "[CloudMap](https://usegalaxy.org/cloudmap) users can replot data produced with the Hawaiian Variant Mapping tool using the NacreousMap engine to obtain optimized (much smaller files that display faster) plots." diff --git a/content/use/mississippi/index.md b/content/use/mississippi/index.md index 2ed6b1dc10..a13eb05b0b 100644 --- a/content/use/mississippi/index.md +++ b/content/use/mississippi/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "MISSISSIPPI Server" platform_location: FR summary: "Support for analyses of RNA and small RNA sequencing datasets as well as for epigenetics or metagenomics studies. " -image: "/src/use/mississippi/mississippi-logo.png" +image: "/use/mississippi/mississippi-logo.png" comments: - "See [ARTbio on Slideshare](http://fr.slideshare.net/christopheantoniewski/linked-in-summary-50629359)" user_support: diff --git a/content/use/msi/index.md b/content/use/msi/index.md index 31220187cb..08d470b5b8 100644 --- a/content/use/msi/index.md +++ b/content/use/msi/index.md @@ -7,7 +7,7 @@ platforms: platform_url: "https://hub.docker.com/r/mcfoell/galaxy-msi" platform_text: "Mass Spectrometry Imaging Docker Image" summary: "Galaxy Docker image for mass spec imaging" -image: "/src/images/logos/DockerInGalaxy.png" +image: "/images/logos/DockerInGalaxy.png" comments: - "The tools on this image are available on [UseGalaxy.eu](/use/usegalaxy-eu/)" user_support: diff --git a/content/use/nanogalaxy/index.md b/content/use/nanogalaxy/index.md index ab29aea7c0..eb91d282dc 100644 --- a/content/use/nanogalaxy/index.md +++ b/content/use/nanogalaxy/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "NanoGalaxy server" platform_location: DE summary: "a webserver to process, analyse and visualize Oxford Nanopore Technologies (ONT) data and similar long-reads technologies." -image: "/src/use/nanogalaxy/nanogalaxy-toolkit.png" +image: "/use/nanogalaxy/nanogalaxy-toolkit.png" comments: - "The public server is hosted by the UesGalaxy.eu team." user_support: diff --git a/content/use/nectar/index.md b/content/use/nectar/index.md index 83cc70a2fa..7689daf8d5 100644 --- a/content/use/nectar/index.md +++ b/content/use/nectar/index.md @@ -8,7 +8,7 @@ platforms: platform_url: "https://nectar.org.au/research-cloud/" platform_text: "Nectar Cloud" summary: "Set up a Galaxy server on Australia's Nectar research cloud." -image: "/src/images/logos/nectar-square-400.png" +image: "/images/logos/nectar-square-400.png" comments: - "Nectar based Galaxy instances can be easily started from CloudLaunch. They are based on the Genomics Virtual Laboratory (GVL)." user_support: diff --git a/content/use/network-analyst/index.md b/content/use/network-analyst/index.md index a4a62d380a..f46ee60a1e 100644 --- a/content/use/network-analyst/index.md +++ b/content/use/network-analyst/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "NetworkAnalyst Galaxy Server" platform_location: CA summary: "For mapping and quantification of raw RNA-seq data" -image: "/src/use/network-analyst/networkanalyst-logo.png" +image: "/use/network-analyst/networkanalyst-logo.png" comments: - "Part of [NetworkAnalyst](https://www.networkanalyst.ca/), a visual analytics platform for comprehensive gene expression profiling & meta-analysis." - "Raw RNAseq processing for 17 species covering mammals, birds, bacteria, plants and parasites." diff --git a/content/use/ng-tax/index.md b/content/use/ng-tax/index.md index ce4186d1d6..5b3927459b 100644 --- a/content/use/ng-tax/index.md +++ b/content/use/ng-tax/index.md @@ -12,7 +12,7 @@ platforms: platform_text: "NG-Tax Docker" platform_location: NL summary: "A Semantic Framework for High-throughput Marker Gene (Amplicon) Analysis" -image: "/src/use/ng-tax/ngtax-workflow.png" +image: "/use/ng-tax/ngtax-workflow.png" comments: - "Supports NG-Tax versions 1 and 2." user_support: diff --git a/content/use/ngphylogeny/index.md b/content/use/ngphylogeny/index.md index 8c6c8693cf..9d22938d2c 100644 --- a/content/use/ngphylogeny/index.md +++ b/content/use/ngphylogeny/index.md @@ -11,7 +11,7 @@ platforms: platform_url: "https://hub.docker.com/r/evolbioinfo/ngphylogeny/" platform_text: "NGPhylogeny.fr Docker image" summary: "Robust phylogenetic analysis for everyone." -image: "/src/use/ngphylogeny/ngphylogeny-steps.png" +image: "/use/ngphylogeny/ngphylogeny-steps.png" comments: - "Free, simple to use web service dedicated to reconstructing and analysing phylogenetic relationships between molecular sequences." - "Site is built on top of Galaxy, but uses an entirely novel interface to Galaxy." diff --git a/content/use/oqtans/index.md b/content/use/oqtans/index.md index d1b6f85dbe..1a0bc4bc8a 100644 --- a/content/use/oqtans/index.md +++ b/content/use/oqtans/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Oqtans Galaxy Server" platform_location: CH summary: "Customized Galaxy, extended with machine learning based tools for sequence and tiling array data analysis. " -image: "/src/use/oqtans/oqtans.png" +image: "/use/oqtans/oqtans.png" comments: - "The Oqtans tool suite is available as:" - "as a [public Galaxy instance](http://galaxy.inf.ethz.ch)" diff --git a/content/use/orione/index.md b/content/use/orione/index.md index f99cd51907..3be816ea5a 100644 --- a/content/use/orione/index.md +++ b/content/use/orione/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Orione" platform_location: IT summary: "A Galaxy based web server for microbiology. [Orione](http://orione.crs4.it/) includes all post mapping or assembling steps from scaffolding to complete annotation pipelines. " -image: "/src/use/orione/orione-logo.png" +image: "/use/orione/orione-logo.png" comments: - 'From the [GCC2013](/events/gcc2013/) poster "[Engaging Galaxy in Microbiology](/events/gcc2013/abstracts/posters/#p7-engaging-galaxy-in-microbiology)"' - "We started on selecting the relevant software in the microbiology area, developing then all the necessary tools to integrate them into the Galaxy ecosystem. In addition to that, we made available several specialized workflows covering major applications such as bacterial resequencing, de novo assembly, scaffolding, bacterial RNA-seq, gene annotation and metagenomics." diff --git a/content/use/osddlinux-livegalaxy/index.md b/content/use/osddlinux-livegalaxy/index.md index cef760b58e..8b801a86f9 100644 --- a/content/use/osddlinux-livegalaxy/index.md +++ b/content/use/osddlinux-livegalaxy/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "OSDDlinux LiveGalaxy" platform_location: IN summary: "Drug discovery " -image: "/src/use/osddlinux-livegalaxy/osdd-linux-live-galaxy-home-page-300.png" +image: "/use/osddlinux-livegalaxy/osdd-linux-live-galaxy-home-page-300.png" comments: - "[OSDD Portal](http://sysborg2.osdd.net)" - '[OSDDlinux LiveGalaxy](http://osddlinux.osdd.net:8001/) exposes the tools that are included in [OSDDlinux](http://osddlinux.osdd.net/), "a customized linux operating system for drug discovery that integrates open source software, libraries, workflows and web services in linux for creating environment for drug discovery."' diff --git a/content/use/palfinder/index.md b/content/use/palfinder/index.md index 92c965e310..6c6e6852c3 100644 --- a/content/use/palfinder/index.md +++ b/content/use/palfinder/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Galaxy Palfinder Service" platform_location: UK summary: "Microsatellite development." -image: "/src/use/palfinder/palfinder.png" +image: "/use/palfinder/palfinder.png" comments: - "A bioinformatics pipeline for microsatellite development from Illumina paired-end sequences" user_support: diff --git a/content/use/plantgenie/index.md b/content/use/plantgenie/index.md index 2abd25ef82..519c843fdf 100644 --- a/content/use/plantgenie/index.md +++ b/content/use/plantgenie/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "PlantGenIE" platform_location: SE summary: "Plant Genome Integrative Explorer Galaxy instance" -image: "/src/use/plantgenie/plantgenie-logo.png" +image: "/use/plantgenie/plantgenie-logo.png" comments: - "The [Plant Genome Integrative Explorer](http://plantgenie.org/) is a collection of interoperable web resources for searching, visualizing and analyzing genomics and transcriptomics data for different plant species." user_support: diff --git a/content/use/prestige/index.md b/content/use/prestige/index.md index d221cfc597..cbb3f75b6f 100644 --- a/content/use/prestige/index.md +++ b/content/use/prestige/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "PreSTIGE" platform_location: US summary: "Predicting Specific Tissue Interactions of Genes and Enhancers " -image: "/src/use/prestige/prestige.png" +image: "/use/prestige/prestige.png" comments: - '"PreSTIGE (Predicting Specific Tissue Interactions of Genes and Enhancers) predicts cell-line specific gene-enhancer interactions for a user-provided cell line as well as 12 PreSTIGE cell lines."' - "Users can generate predictions for any cell type of interest for which H3K4me1 ChIP-seq and RNA-seq data are available." diff --git a/content/use/proteogenomics-gateway/index.md b/content/use/proteogenomics-gateway/index.md index 07454ae3e4..c3a55ffd9a 100644 --- a/content/use/proteogenomics-gateway/index.md +++ b/content/use/proteogenomics-gateway/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Galaxy-P Proteogenomics Gateway" platform_location: US summary: "Provides access to documentation and other instructional materials, and an opportunity for hands-on training using example datasets and optimized proteogenomics workflows. The main goal of this server is to provide documentation to facilitate training and mastery of these software and workflows." -image: "/src/use/proteogenomics-gateway/proteogenomics-landing-400.png" +image: "/use/proteogenomics-gateway/proteogenomics-landing-400.png" comments: - "The main goal of this server is to provide documentation to facilitate training and mastery of these software and workflows." user_support: diff --git a/content/use/proteore/index.md b/content/use/proteore/index.md index 6f83ab03af..65eed982e0 100644 --- a/content/use/proteore/index.md +++ b/content/use/proteore/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "ProteoRE Galaxy" platform_location: FR summary: "ProteoRE (Proteomics Research Environment)" -image: "/src/use/proteore/proteore.png" +image: "/use/proteore/proteore.png" comments: - '"ProteoRE (Proteomics Research Environment) aims at centrally providing the proteomics community with an online research service enabling biologists/clinicians without programming expertise to **annotate and interpret** their proteomics data through the Web."' - "ProteoRE currently comprises tools (including graphical display) for:" diff --git a/content/use/qiime2/index.md b/content/use/qiime2/index.md index 385ed18002..6999488d40 100644 --- a/content/use/qiime2/index.md +++ b/content/use/qiime2/index.md @@ -7,7 +7,7 @@ platforms: platform_url: "https://quay.io/repository/qiime2/q2galaxy" platform_text: "q2galaxy" summary: "QIIME 2 Galaxy Docker image." -image: "/src/images/logos/qiime2.svg" +image: "/images/logos/qiime2.svg" comments: - "Starting with the 2021.4 release of QIIME 2, this Docker image is automatically updated as QIIME 2 is updated. This container is maintained by the QIIME 2 team." - "QIIME 2 is a next-generation microbiome bioinformatics platform that is extensible, free, and open source." diff --git a/content/use/quantp/index.md b/content/use/quantp/index.md index 59010dc23f..9fbaf101ad 100644 --- a/content/use/quantp/index.md +++ b/content/use/quantp/index.md @@ -7,7 +7,7 @@ platforms: platform_url: "https://z.umn.edu/quantpdocker" platform_text: "QuanTP Galaxy Docker" summary: "A Docker image containing a fully-operational Galaxy instance with pre-installed QuanTP tools." -image: "/src/use/quantp/quantp-fig3-400.jpg" +image: "/use/quantp/quantp-fig3-400.jpg" comments: - "A suite of tools and functionalities critical for proteo-transcriptomics, including statistical algorithms for assessing the correlation between single transcript–protein pairs as well as across two cohorts, outlier identification and clustering, along with a diverse set of results visualizations." - "QuanTP is available in this Docker image, and on the [Proteogenomics Gateway](/use/proteogenomics-gateway/) and [UseGalaxy.eu](https://usegalaxy.eu/)." diff --git a/content/use/repeatexplorer/index.md b/content/use/repeatexplorer/index.md index 56785e5346..f08f0ff9a8 100644 --- a/content/use/repeatexplorer/index.md +++ b/content/use/repeatexplorer/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "RepeatExplorer" platform_location: CZ summary: "Graph-based clustering and characterization of repetitive sequences, and detection of transposable element protein coding domains." -image: "/src/use/repeatexplorer/repeatexplorer-home-page-300.png" +image: "/use/repeatexplorer/repeatexplorer-home-page-300.png" comments: - "Utilities for [Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data](http://www.biomedcentral.com/1471-2105/11/378) and tools for the detection of transposable element protein coding domains" - "There is an [annual RepeatExplorer workshop](http://repeatexplorer.org/?page_id=14)." diff --git a/content/use/ribogalaxy/index.md b/content/use/ribogalaxy/index.md index 9845bcfbd1..31461e8bac 100644 --- a/content/use/ribogalaxy/index.md +++ b/content/use/ribogalaxy/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "RiboGalaxy" platform_location: IE summary: "Tools for the analysis and visualization of ribo-seq data obtained with the ribosome profiling technique. " -image: "/src/use/ribogalaxy/ribogalaxy-logo.png" +image: "/use/ribogalaxy/ribogalaxy-logo.png" comments: - "[RiboGalaxy](http://ribogalaxy.ucc.ie) is a freely available web server for processing and analysing ribosome profiling (ribo-seq) data with the visualization functionality provided by [GWIPS-viz](http://gwips.ucc.ie/). RiboGalaxy provides a compact suite of tools specifically tailored for the alignment and visualization of ribo-seq and corresponding mRNA-seq data. Users can take advantage of the published workflows on RiboGalaxy which reduce the multi-step alignment process to a minimum of inputs." user_support: diff --git a/content/use/rice-galaxy/index.md b/content/use/rice-galaxy/index.md index d6f0f51450..f198badab1 100644 --- a/content/use/rice-galaxy/index.md +++ b/content/use/rice-galaxy/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Rice Galaxy" platform_location: PH summary: "Tools for designing single-nucleotide polymorphism assays, analyzing genome-wide association studies, population diversity, rice−bacterial pathogen diagnostics, and a suite of published genomic prediction methods." -image: "/src/use/rice-galaxy/rice-galaxy-3k.jpg" +image: "/use/rice-galaxy/rice-galaxy-3k.jpg" comments: - "Has shared datasets that include high-density genotypes from the 3,000 Rice Genomes project and sequences with corresponding annotations from 9 published rice genomes." - "Rice Galaxy is a freely available resource that empowers the plant research community to perform state-of-the-art analyses and utilize publicly available big datasets for both fundamental and applied science." diff --git a/content/use/rna-workbench/index.md b/content/use/rna-workbench/index.md index e685a0dacd..641ab94e55 100644 --- a/content/use/rna-workbench/index.md +++ b/content/use/rna-workbench/index.md @@ -11,7 +11,7 @@ platforms: platform_url: "https://github.com/bgruening/galaxy-rna-workbench" platform_text: "Docker" summary: "more than 50 bioinformatics tools dedicated to different research areas of RNA biology, including RNA structure analysis, RNA alignment, RNA annotation, RNA-protein interaction, ribosome profiling, RNA-Seq analysis, and RNA target prediction." -image: "/src/use/rna-workbench/rna-workbench-logo.png" +image: "/use/rna-workbench/rna-workbench-logo.png" comments: - "A comprehensive set of analysis tools and consolidated workflows." - "The public server is hosted by the UesGalaxy.eu team." diff --git a/content/use/sciensano/index.md b/content/use/sciensano/index.md index d57bcee005..0e6536c4f1 100644 --- a/content/use/sciensano/index.md +++ b/content/use/sciensano/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Sciensano Galaxy" platform_location: BE summary: "General purpose Galaxy server optimized for microbiological genomics applications of interest for public health." -image: "/src/images/logos/sciensano-logo.jpg" +image: "/images/logos/sciensano-logo.jpg" comments: - "Galaxy server is optimized for analysis of Illumina data, but also supports IonTorrent data. Pacific Biosciences and Oxford Nanopore Technologies data are not (yet) supported." user_support: diff --git a/content/use/singlecell/index.md b/content/use/singlecell/index.md index 84ab716abf..c6a15dd945 100644 --- a/content/use/singlecell/index.md +++ b/content/use/singlecell/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Single Cell Workbench Server" platform_location: DE summary: "The Single Cell Omics workbench is a comprehensive set of analysis tools and consolidated workflows" -image: "/src/use/singlecell/logo_single_cell.svg" +image: "/use/singlecell/logo_single_cell.svg" comments: - "The current implementation comprises more than 20 bioinformatics tools dedicated to different research areas of single cell biology." - "The public server is hosted by the UesGalaxy.eu team." diff --git a/content/use/snic-science-cloud/index.md b/content/use/snic-science-cloud/index.md index 86720cbaa7..2d8c222186 100644 --- a/content/use/snic-science-cloud/index.md +++ b/content/use/snic-science-cloud/index.md @@ -8,7 +8,7 @@ platforms: platform_url: "https://cloud.snic.se/" platform_text: "SNIC Science Cloud" summary: "A national-scale cloud infrastructure for Swedish Academia" -image: "/src/use/snic-science-cloud/snic-science-cloud.png" +image: "/use/snic-science-cloud/snic-science-cloud.png" comments: - 'The SNIC Science Cloud (SSC) is a community cloud and use of the resources is free of charge to Swedish PIs and their collaborators. As for other SNIC allocations you need an affiliation with a Swedish higher education institution to be eligible to apply for a project.' user_support: diff --git a/content/use/tgm/index.md b/content/use/tgm/index.md index e20b091818..2e826cac3f 100644 --- a/content/use/tgm/index.md +++ b/content/use/tgm/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "TGM Galaxy Server" platform_location: LU summary: "The *TGM pipeline* is a workflow combining tranSMART server, Galaxy Server and MINERVA platform to enable visually-aided exploration, analysis and interpretation of high-throughput translational medicine data." -image: "/src/use/tgm/tgm-fig1.png" +image: "/use/tgm/tgm-fig1.png" comments: - "The Galaxy part of the pipeline allows for establishing analytical workflows for data from the [tranSMART server](http://r3lab.uni.lu/web/tgm-pipeline/#transmart-setup). Analytical results (list of molecules) are sent to the associated [MINERVA instance](http://r3lab.uni.lu/web/tgm-pipeline/#minerva-setup), hosting the PD map." user_support: diff --git a/content/use/treegenes/index.md b/content/use/treegenes/index.md index 066b93d1b7..ed1e768fc6 100644 --- a/content/use/treegenes/index.md +++ b/content/use/treegenes/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "TreeGenes Galaxy" platform_location: US summary: " TreeGenes integrates genotype, phenotype, and environmental data that can be processed for association mapping and landscape genomics, with a focus on forest trees. This functionality is provided by [Tripal Galaxy](https://github.com/tripal/tripal_galaxy), a module for [Tripal](http://tripal.info) that provides seamless support for running Galaxy workflows directly in the site. Users can analyze data provided by TreeGenes or their own." -image: "/src/use/treegenes/treegenes-flowchart.png" +image: "/use/treegenes/treegenes-flowchart.png" comments: - "[TreeGenes](https://treegenesdb.org) is utilizing the [Tripal Galaxy API](https://github.com/tripal/tripal_galaxy) in order to provide seamless Galaxy workflow support to users on the site. Examples currently in development" - "[CartograTree](https://treegenesdb.org/cartogratree): Web-based map-driven module to provide association and landscape genomics. Uses [Sambada](https://github.com/Sylvie/sambada)" diff --git a/content/use/usegalaxy-au/index.md b/content/use/usegalaxy-au/index.md index a20a6ef54e..1a0607d5b8 100644 --- a/content/use/usegalaxy-au/index.md +++ b/content/use/usegalaxy-au/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "UseGalaxy Australia" platform_location: AU summary: "The Australian UseGalaxy server." -image: "/src/use/usegalaxy-au/usegalaxy-au-landing-page-500.png" +image: "/use/usegalaxy-au/usegalaxy-au-landing-page-500.png" comments: - "Strong on genomics; good central repository for shared Galaxy objects. See [Main](/main/) for more." user_support: diff --git a/content/use/usegalaxy-be/index.md b/content/use/usegalaxy-be/index.md index dcfe0cb9a0..e2f8385775 100644 --- a/content/use/usegalaxy-be/index.md +++ b/content/use/usegalaxy-be/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "ELIXIR Belgium Galaxy Server" platform_location: BE summary: "General purpose genomics Galaxy server" -image: "/src/use/usegalaxy-be/usegalaxy-be-logo.png" +image: "/use/usegalaxy-be/usegalaxy-be-logo.png" comments: - "A public Galaxy server with an emphasis on serving researchers in Belgium." - "[Real time status](https://usegalaxy.be/stats/)" diff --git a/content/use/usegalaxy-eu/index.md b/content/use/usegalaxy-eu/index.md index a612701daa..20fc152a72 100644 --- a/content/use/usegalaxy-eu/index.md +++ b/content/use/usegalaxy-eu/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "UseGalaxy Europe" platform_location: DE summary: "The European UseGalaxy server." -image: "/src/use/usegalaxy-eu/usegalaxy-eu-landing-page-500.png" +image: "/use/usegalaxy-eu/usegalaxy-eu-landing-page-500.png" comments: - "Strong on genomics; good central repository for shared Galaxy objects." user_support: diff --git a/content/use/usegalaxy-fr/index.md b/content/use/usegalaxy-fr/index.md index b752a7083e..e9d000ea6c 100644 --- a/content/use/usegalaxy-fr/index.md +++ b/content/use/usegalaxy-fr/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "French Galaxy Server" platform_location: FR summary: "General purpose genomics Galaxy server" -image: "/src/use/usegalaxy-fr/usegalaxy-fr-logo.png" +image: "/use/usegalaxy-fr/usegalaxy-fr-logo.png" comments: - "A public Galaxy instance " user_support: diff --git a/content/use/usegalaxy-org/index.md b/content/use/usegalaxy-org/index.md index 3e5257f645..a319191188 100644 --- a/content/use/usegalaxy-org/index.md +++ b/content/use/usegalaxy-org/index.md @@ -17,7 +17,7 @@ pub_libraries: - "UseGalaxy.org" - "UseMain" - "Project" -image: "/src/images/logos/UseGalaxy.orgLogo600.png" +image: "/images/logos/UseGalaxy.orgLogo600.png" user_support: - "[Galaxy Project Gitter Support Channel](https://gitter.im/galaxyproject/Lobby)" - "[Galaxy Help Forum](https://help.galaxyproject.org/)" diff --git a/content/use/usmi-galaxy-demonstrator/index.md b/content/use/usmi-galaxy-demonstrator/index.md index 179a2aceee..12b609fd15 100644 --- a/content/use/usmi-galaxy-demonstrator/index.md +++ b/content/use/usmi-galaxy-demonstrator/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "USMI Galaxy Demonstrator" platform_location: IT summary: "This Galaxy implementation is meant to demonstrate integration of microbial domain Biological Resource Center (mBRC) catalogues into the bioinformatics data integration environment. " -image: "/src/use/usmi-galaxy-demonstrator/usmi.png" +image: "/use/usmi-galaxy-demonstrator/usmi.png" comments: - "The project is still in a development phase." user_support: diff --git a/content/use/vinther-lab/index.md b/content/use/vinther-lab/index.md index 4e47c011e5..a7ec9bc2af 100644 --- a/content/use/vinther-lab/index.md +++ b/content/use/vinther-lab/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "Vinther Lab server" platform_location: DK summary: "RNA structure-probing data analysis to improve the prediction of RNA secondary and tertiary structure and allow structural changes to be identified and investigated. " -image: "/src/use/vinther-lab/vinther-lab-300.png" +image: "/use/vinther-lab/vinther-lab-300.png" comments: - 'From [Kielpinski, et al.](http://www.sciencedirect.com/science/article/pii/S0076687915000713): "a collection of tools, which allow raw sequencing reads to be converted to normalized probing values using different published strategies. In addition, we also provide tools for visualization of the probing data in the UCSC Genome Browser and for converting RNA coordinates to genomic coordinates and vice versa. The collection is implemented as functions in the R statistical environment and as tools in the Galaxy platform, making them easily accessible for the scientific community."' user_support: diff --git a/content/use/viramp/index.md b/content/use/viramp/index.md index d5560eb819..6730116372 100644 --- a/content/use/viramp/index.md +++ b/content/use/viramp/index.md @@ -8,7 +8,7 @@ platforms: platform_text: "VirAmp Galaxy" platform_location: US summary: "VirAmp is a web-based semi-*de novo* fast virus genome assembly pipeline designed for extremely high coverage NGS data. " -image: "/src/use/viramp/viramp-home.png" +image: "/use/viramp/viramp-home.png" comments: - 'From [Wan et al.](https://www.ncbi.nlm.nih.gov/pubmed/25918639): "[VirAmp](http://viramp.com/) "combines existing tools and techniques and presents them to end users via a web-enabled Galaxy interface. Our pipeline allows users to assemble, analyze, and interpret high coverage viral sequencing data with an ease and efficiency that was not possible previously. Our software makes a large number of genome assembly and related tools available to life scientists and automates the currently recommended best practices into a single, easy to use interface. We tested our pipeline with three different datasets from human herpes simplex virus (HSV)."' user_support: diff --git a/content/use/workflow4metabolomics/index.md b/content/use/workflow4metabolomics/index.md index ae0c7c73e5..ff52aab730 100644 --- a/content/use/workflow4metabolomics/index.md +++ b/content/use/workflow4metabolomics/index.md @@ -11,7 +11,7 @@ platforms: platform_url: "https://hub.docker.com/r/workflow4metabolomics/galaxy-workflow4metabolomics/" platform_text: "Workflow4Metabolomics in Docker" summary: "A collaborative portal dedicated to metabolomics data processing, analysis and annotation. " -image: "/src/use/workflow4metabolomics/workflow4metabolomics.png" +image: "/use/workflow4metabolomics/workflow4metabolomics.png" comments: - "[Workflow4metabolomics.org](http://workflow4metabolomics.org/)" - "[LC-MS](http://workflow4metabolomics.org/the-lc-ms-workflow), [GC-MS](http://workflow4metabolomics.org/the-gc-ms-workflow) and [NMR](http://workflow4metabolomics.org/the-nmr-workflow) workflows are provided."