diff --git a/run.sh b/run.sh
index b2aba3efb8..ec7bf82c64 100755
--- a/run.sh
+++ b/run.sh
@@ -127,9 +127,9 @@ fi
 
 (
   cd ./src/scripts/merge_tools/merging
-  export JAVA_HOME=$GRAALVM_HOME
+  export JAVA_HOME=$JAVA17_HOME
   export PATH="$JAVA_HOME/bin:$PATH"
-  ./gradlew nativeCompile
+  ./gradlew shadowJar
 )
 
 echo "Machine ID: $machine_id"
diff --git a/src/scripts/merge_tools/merging b/src/scripts/merge_tools/merging
index a51fc28111..b636e7c829 160000
--- a/src/scripts/merge_tools/merging
+++ b/src/scripts/merge_tools/merging
@@ -1 +1 @@
-Subproject commit a51fc28111b2ec20535722f2c2402402ad21362a
+Subproject commit b636e7c82930df750a324c20ce8f99610cc2751b