code_check.yml

name: Code Checking & Scan

on:
  workflow_dispatch:
  workflow_call:

env:
  singularity_image: oras://ghcr.io/berenslab/retinal-rl:singularity-image
  sif_file: retinal-rl_singularity-image.sif

jobs:
  check:
    runs-on: ubuntu-latest
    steps:
    - name: Checkout code
      uses: actions/checkout@v4
      with:
        fetch-depth: 0
    - name: Fetch all branches
      run: git fetch --all

    - name: Setup Apptainer
      uses: eWaterCycle/setup-apptainer@v2
      with:
        apptainer-version: 1.3.6

    - name: Cache Singularity Image
      id: cache-singularity
      uses: actions/cache/restore@v4
      with:
        path: ${{ env.sif_file }}
        key: ${{ runner.os }}-singularity-${{ hashFiles('resources/retinal-rl.def') }}

    - name: Run Linter / Code check
      if: always() && steps.cache-singularity.outputs.cache-hit == 'true'
      run: bash tests/ci/lint.sh ${{ env.sif_file }}

    - name: Scan configs
      if: always() && steps.cache-singularity.outputs.cache-hit == 'true'
      run: |
         bash tests/ci/copy_configs.sh ${{ env.sif_file }}
         bash tests/ci/scan_configs.sh ${{ env.sif_file }}
    
    - name: Build Scenario
      if: always() && steps.cache-singularity.outputs.cache-hit == 'true'
      run: bash tests/ci/build_scenario.sh ${{ env.sif_file }}

    - name: Pytest
      if: always() && steps.cache-singularity.outputs.cache-hit == 'true'
      run: apptainer exec ${{ env.sif_file }} pytest tests/modules