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add new TE canonical sequences from Zanni et al #33

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cbergman opened this issue Jan 7, 2021 · 0 comments
Open

add new TE canonical sequences from Zanni et al #33

cbergman opened this issue Jan 7, 2021 · 0 comments

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@cbergman
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cbergman commented Jan 7, 2021

  • Zanni et al (2015) identified several new Drosophila TEs by mining sequences in the flamenco locus: https://www.pnas.org/content/110/49/19842
  • Table S2 summarizes the new TE sequences. There are 9 D. melanogaster sequences listed in Table S2

image

$ grep melanogaster *txt
>G6-fl [Drosophila melanogaster]
>Gedeo_Dm [Drosophila melanogaster]
>Gypsy2S [Drosophila melanogaster]
>GYPSY6S_A [Drosophila melanogaster]
>GYPSY6S_B [Drosophila melanogaster]
>Phidippo_Dm [Drosophila melanogaster] rebuilt without Pifo insertion
>Pifo_Dm_A [Drosophila melanogaster]
  • Pifo Dm B and C are in Table S2 but not in file sd02
  • G6-fl is RIJ (jockey LINE-element), others are RLG (gypsy LTR element), according to Wicker 2007 Figure 1.
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