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Issues list

Update 'join' tool to also accept parquet (and hdf5?)
#1548 opened Nov 18, 2024 by hechth
Autoupdate errors
#1511 opened Sep 30, 2024 by gxydevbot
9
Autoupdate errors
#1510 opened Sep 30, 2024 by gxydevbot
Autoupdate errors
#1509 opened Sep 26, 2024 by gxydevbot
split_file_to_collection hardcodes fastq output
#1490 opened Aug 26, 2024 by mvdbeek
aragorn_out_to_gff3.py error when parsing genomes with tmRNA's
#1482 opened Aug 16, 2024 by cdshaffer
cannot find 'reference_genome' in toolshed.g2.bx.psu.edu/repos/bgruening/hicup_digester/hicup_digester/0.9.2+galaxy0 bug
#1478 opened Aug 15, 2024 by mvdbeek
Update text-processing/replace_text_in_column examples
#1466 opened Jul 31, 2024 by GomeChas
Blobtoolkit can have trouble parsing raw Diamond results
#1456 opened Jul 15, 2024 by jennaj
MitoHiFi defaulting to animal data
#1454 opened Jul 13, 2024 by Hymenium
1
Viz plugin requiring multiple datasets as input
#1414 opened Mar 29, 2024 by GuilhemSempere
Genbank file is not optional
#1389 opened Feb 26, 2024 by mthang
4
Many tools specify format="text" as data inputs or outputs
#1387 opened Feb 21, 2024 by mvdbeek
agat_sp_keep_longest_isoform.pl needed
#1370 opened Dec 19, 2023 by bgruening
Integration of a few BioModels (ML models)
#1365 opened Dec 7, 2023 by anuprulez
2 of 7 tasks
Update or replace link in help section of tp_awk_tool
#1321 opened Jul 19, 2023 by jennaj
1
Add more information to the help section.
#1236 opened Sep 20, 2022 by mthang
1
Format of Search CV parameters
#1231 opened Aug 8, 2022 by anuprulez
12
Missing PAF file format for the overlaps in the wrapper
#1196 opened Feb 25, 2022 by mthang
4
Compound conversion: Add index to output
#1189 opened Jan 31, 2022 by hechth
12
Unused tool parameters
#1185 opened Jan 24, 2022 by bernt-matthias
23 tasks
fgrep (grep -F) option
#1184 opened Jan 19, 2022 by eschen42
1
Additional files for Canu output
#1156 opened Sep 8, 2021 by TT1972
How to install the sortmerna databases using the data manager?
#1146 opened Aug 18, 2021 by hepcat72
Failure running my ML workflows
#1115 opened May 13, 2021 by kxk302
22
ProTip! Exclude everything labeled bug with -label:bug.