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create-env.yaml
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name: 'Build & Push: create-env'
on:
push:
branches:
- main
paths:
- images/create-env/*
- .github/workflows/create-env.yaml
pull_request:
paths:
- images/create-env/*
- .github/workflows/create-env.yaml
jobs:
build:
name: Build & Push
runs-on: ubuntu-22.04
env:
MAJOR_VERSION: 3
MINOR_VERSION: 0
IMAGE_NAME: create-env
steps:
- uses: actions/checkout@v4
- name: Set up QEMU
uses: docker/setup-qemu-action@v2
with:
platforms: arm64
- name: Prepare
id: prepare
run: |
curl -sSL \
'https://raw.githubusercontent.com/bioconda/bioconda-common/master/common.sh' \
| sed -n \
's/BIOCONDA_UTILS_TAG=v/bioconda_utils_version=/p' \
>> $GITHUB_OUTPUT
- name: Build
id: build
uses: redhat-actions/buildah-build@v2
with:
image: ${{ env.IMAGE_NAME }}
tags: >-
latest
${{ env.MAJOR_VERSION }}
${{ env.MAJOR_VERSION }}.${{ env.MINOR_VERSION }}
archs: amd64,arm64
context: ./images/${{ env.IMAGE_NAME }}
containerfiles: |
./images/${{ env.IMAGE_NAME }}/Dockerfile
build-args: |
bioconda_utils_version=${{ steps.prepare.outputs.bioconda_utils_version }}
- name: Test
run: |
image='${{ steps.build.outputs.image }}'
ids="$(
for tag in ${{ steps.build.outputs.tags }} ; do
buildah manifest inspect "${image}:${tag}" \
| jq -r '.manifests[]|.digest' \
| while read id ; do
buildah images --format '{{.ID}}{{.Digest}}' \
| sed -n "s/${id}//p"
done
done
)"
ids="$( printf %s "${ids}" | sort -u )"
for id in ${ids} ; do
podman history "${id}"
buildah bud \
--build-arg=base="${id}" \
--file=Dockerfile.test \
"images/${image}"
done
buildah rmi --prune || true
- name: Check Tags
run: |
# FIX upstream: Quay.io does not support immutable images currently.
# => Try to use the REST API to check for duplicate tags.
response="$(
curl -sL \
'https://quay.io/api/v1/repository/bioconda/${{ steps.build.outputs.image }}/tag/'
)"
existing_tags="$(
printf %s "${response}" \
| jq -r '.tags[]|select(.end_ts == null or .end_ts >= now)|.name'
)" \
|| {
printf %s\\n \
'Could not get list of image tags.' \
'Does the repository exist on Quay.io?' \
'Quay.io REST API response was:' \
"${response}"
exit 1
}
for tag in ${{ steps.build.outputs.tags }} ; do
case "${tag}" in
latest | '${{ env.MAJOR_VERSION }}' ) ;;
* )
if printf %s "${existing_tags}" | grep -qxF "${tag}" ; then
printf 'Tag %s already exists!\n' "${tag}"
exit 1
fi
esac
done
- if: ${{ github.ref == 'refs/heads/main' }}
name: Push
uses: redhat-actions/push-to-registry@v2
with:
image: ${{ steps.build.outputs.image }}
tags: ${{ steps.build.outputs.tags }}
registry: ${{ secrets.QUAY_BIOCONDA_REPO }}
username: ${{ secrets.QUAY_BIOCONDA_USERNAME }}
password: ${{ secrets.QUAY_BIOCONDA_TOKEN }}
- if: ${{ github.ref == 'refs/heads/main' }}
name: Test Pushed
run: |
image='${{ env.IMAGE_NAME }}'
ids="$(
for tag in ${{ steps.build.outputs.tags }} ; do
buildah manifest inspect "${image}:${tag}" \
| jq -r '.manifests[]|.digest' \
| while read id ; do
buildah images --format '{{.ID}}{{.Digest}}' \
| sed -n "s/${id}//p"
done
done
)"
ids="$( printf %s "${ids}" | sort -u )"
for id in ${ids} ; do
podman history "${id}"
buildah bud \
--build-arg=base="${id}" \
--file=Dockerfile.test \
"images/${image}"
done
buildah rmi --prune || true