build-failures.yml

name: Update build failure list

on:
  schedule:
    - cron: 5 5 * * *
  push:
    branches:
      - master
      - bulk
    paths:
      - "**build_failure.*.yaml"

jobs:
  update-build-failure-page:
    name: Update build failure page
    if: ${{ github.repository == 'bioconda/bioconda-recipes' && !contains(github.event.head_commit.message, '[ci skip]') }}
    runs-on: ubuntu-22.04
    steps:
      - uses: actions/checkout@v4
        with:
          fetch-depth: 0

      - name: set path
        run: echo "/opt/mambaforge/bin" >> $GITHUB_PATH

      - name: Fetch conda install script
        run: |
          wget https://raw.githubusercontent.com/bioconda/bioconda-common/master/{common,install-and-set-up-conda,configure-conda}.sh

      - name: Restore cache
        id: cache
        uses: actions/cache@v4
        with:
          path: /opt/mambaforge
          key: ${{ runner.os }}--master--${{ hashFiles('install-and-set-up-conda.sh', 'common.sh', 'configure-conda.sh') }}

      - name: Set up bioconda-utils
        if: steps.cache.outputs.cache-hit != 'true'
        run: bash install-and-set-up-conda.sh

      # This script can be used to reconfigure conda to use the right channel setup.
      # This has to be done after the cache is restored, because
      # the channel setup is not cached as it resides in the home directory.
      # We could use a system-wide (and therefore cached) channel setup,
      # but mamba does not support that at the time of implementation
      # (it ignores settings made with --system).
      - name: Configure conda
        run: bash configure-conda.sh

      - name: Install dev version of bioconda-utils for testing https://github.com/bioconda/bioconda-utils/pull/948
        run: |
          source /opt/mambaforge/etc/profile.d/conda.sh
          source /opt/mambaforge/etc/profile.d/mamba.sh
          mamba activate bioconda
          pip install git+https://github.com/bioconda/bioconda-utils.git@70071ab199c8246e09f22c9bcce295cbb5d776e5

      - name: Generate build failure table
        run: |
          set -e
          eval "$(conda shell.bash hook)"
          conda activate bioconda
          branch=${{ github.ref_name }}
          mkdir build-failures
          if [[ -z $branch || $branch == "master" ]] ; then
            md=build-failures/build-failures.md
            echo "# Build failures" > $md
            echo "Automatically updated (nightly) list of build failures that currently block builds from the listed recipes. Please help with fixing them!" >> $md
            bioconda-utils list-build-failures recipes --output-format markdown --link-prefix https://github.com/bioconda/bioconda-recipes/blob/master >> $md
          else
            if [ -z "$GITHUB_BASE_REF" ] ; then
                export GITHUB_BASE_REF="master"
            fi
            git fetch origin "$GITHUB_BASE_REF"
            md="build-failures/build-failures-${branch}.md"
            echo "# Build failures on \`${branch}\`" > $md
            echo "Automatically updated list of build failures that currently block builds from the listed recipes on the \`${branch}\` branch." >> $md
            bioconda-utils list-build-failures recipes --git-range origin/"$GITHUB_BASE_REF" HEAD --output-format markdown --link-prefix https://github.com/bioconda/bioconda-recipes/blob/$branch >> $md
          fi
      - name: Upload build failure to wiki
        uses: docker://decathlon/wiki-page-creator-action:latest
        env:
          GH_PAT: ${{secrets.BIOCONDA_BOT_REPO_TOKEN}}
          ACTION_MAIL: BiocondaBot@users.noreply.github.com
          ACTION_NAME: BiocondaBot
          OWNER: bioconda
          REPO_NAME: bioconda-recipes
          MD_FOLDER: build-failures