From ac3e602bc50dda6820e50bc5e5a02d0a83a6e830 Mon Sep 17 00:00:00 2001
From: aliciaaevans <alicia.evans@nih.gov>
Date: Tue, 2 Apr 2024 16:42:00 -0400
Subject: [PATCH] initial merge wf (set up for testing)

---
 .github/workflows/master-arm.yml | 79 ++++++++++++++++++++++++++++++++
 1 file changed, 79 insertions(+)
 create mode 100644 .github/workflows/master-arm.yml

diff --git a/.github/workflows/master-arm.yml b/.github/workflows/master-arm.yml
new file mode 100644
index 0000000000000..e8c2a42287aa1
--- /dev/null
+++ b/.github/workflows/master-arm.yml
@@ -0,0 +1,79 @@
+name: Upload
+on:
+  push:
+    branches:
+      - target-for-arm-osx
+
+jobs:
+  build-upload-osx-arm:
+    name: osx-arm64 Upload
+    if: github.repository == 'bioconda/bioconda-recipes'
+    runs-on: macOS-14 # M1
+    strategy:
+      fail-fast: false
+      max-parallel: 4
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      # TODO: bail if there's no osx-arm64 recipes
+      # - run:
+      #     name: Check for Additional Platforms
+      #     command: ./.circleci/check-for-additional-platforms.sh "${CIRCLE_SHA1}~1 ${CIRCLE_SHA1}" "build_and_upload"
+
+      - name: set path
+        run: echo "/opt/mambaforge/bin" >> $GITHUB_PATH
+
+      - name: Fetch conda install script
+        run: |
+          wget https://raw.githubusercontent.com/bioconda/bioconda-common/master/{install-and-set-up-conda,configure-conda,common}.sh
+
+      - name: Restore cache
+        id: cache
+        uses: actions/cache@v4
+        with:
+          path: /opt/mambaforge
+          key: ${{ runner.os }}--master--${{ hashFiles('install-and-set-up-conda.sh', 'common.sh', 'configure-conda.sh') }}
+
+      - name: Set up bioconda-utils
+        if: steps.cache.outputs.cache-hit != 'true'
+        run: bash install-and-set-up-conda.sh
+
+      # This script can be used to reconfigure conda to use the right channel setup.
+      # This has to be done after the cache is restored, because
+      # the channel setup is not cached as it resides in the home directory.
+      # We could use a system-wide (and therefore cached) channel setup,
+      # but mamba does not support that at the time of implementation
+      # (it ignores settings made with --system).
+      - name: Configure conda
+        run: bash configure-conda.sh
+
+      - name: Build and Upload
+        env:
+          QUAY_LOGIN: ${{ secrets.QUAY_LOGIN }}
+          QUAY_OAUTH_TOKEN: ${{ secrets.QUAY_OAUTH_TOKEN }}
+          ANACONDA_TOKEN: ${{ secrets.ANACONDA_TOKEN }}
+          INVOLUCRO_AUTH: ${{ secrets.INVOLUCRO_AUTH }}
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          # Mimic circleci
+          OSTYPE: "darwin"
+          CI: "true"
+        run: |
+          set -e
+          eval "$(conda shell.bash hook)"
+          conda activate bioconda
+
+          # Use SDK with arm64 support
+          export MACOSX_DEPLOYMENT_TARGET=11.0
+
+          # The SDK isn't actually cached, so reinstall it
+          run_conda_forge_build_setup
+
+          bioconda-utils handle-merged-pr recipes config.yml \
+            --repo bioconda/bioconda-recipes \
+            --git-range ${GITHUB_SHA}~1 ${GITHUB_SHA} \
+            --fallback build \
+            --artifact-source github-actions \
+            --dry-run
+          # TODO: remove dry-run after testing