Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

pysam should be available for python 3.11 #42796

Closed
jamestwebber opened this issue Sep 1, 2023 · 3 comments
Closed

pysam should be available for python 3.11 #42796

jamestwebber opened this issue Sep 1, 2023 · 3 comments
Labels
py-3.11-support

Comments

@jamestwebber
Copy link

The latest release of pysam is compatible with python 3.11, but it can't be installed from bioconda. I'm not sure why.

I would open a PR to fix this but I'm genuinely confused where the constraint is coming from. On the recipe website it says pysam has an upper-bound of python < 3.11.0a0 but I don't see anything about this in the recipe. What is causing that?
@jmarshall
Copy link
Member

This is not specific to pysam. See #37805.

@corneliusroemer
Copy link
Member

The answer for now:

Yes, we intend to support Python 3.11 and 3.12. However, we are currently busy rolling out the ARM builds and in parallel the BioConductor release. This keeps us and the CI already busy. Realistically we can only care about 3.11/12 in January. Sorry.
(from bioconda/bioconda-utils#938 (comment))

@corneliusroemer
Copy link
Member

Closing as duplicate of #37805

@corneliusroemer corneliusroemer closed this as not planned Won't fix, can't repro, duplicate, stale Dec 20, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
py-3.11-support
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
3 participants
@jmarshall @jamestwebber @corneliusroemer