diff --git a/recipes/r-scroshi/build.sh b/recipes/r-scroshi/build.sh new file mode 100644 index 0000000000000..df943f40e3e3d --- /dev/null +++ b/recipes/r-scroshi/build.sh @@ -0,0 +1,22 @@ +#!/bin/bash + +# 'Autobrew' is being used by more and more packages these days +# to grab static libraries from Homebrew bottles. These bottles +# are fetched via Homebrew's --force-bottle option which grabs +# a bottle for the build machine which may not be macOS 10.9. +# Also, we want to use conda packages (and shared libraries) for +# these 'system' dependencies. See: +# https://github.com/jeroen/autobrew/issues/3 +export DISABLE_AUTOBREW=1 + +# R refuses to build packages that mark themselves as Priority: Recommended +mv DESCRIPTION DESCRIPTION.old +grep -va '^Priority: ' DESCRIPTION.old > DESCRIPTION +# shellcheck disable=SC2086 +${R} CMD INSTALL --build . ${R_ARGS} + +# Add more build steps here, if they are necessary. + +# See +# https://docs.conda.io/projects/conda-build +# for a list of environment variables that are set during the build process. diff --git a/recipes/r-scroshi/meta.yaml b/recipes/r-scroshi/meta.yaml new file mode 100644 index 0000000000000..1de49ef5c034b --- /dev/null +++ b/recipes/r-scroshi/meta.yaml @@ -0,0 +1,54 @@ +{% set version = '1.0.0.0' %} + +package: + name: r-scroshi + version: {{ version|replace("-", "_") }} + +source: + url: + - {{ cran_mirror }}/src/contrib/scROSHI_{{ version }}.tar.gz + - {{ cran_mirror }}/src/contrib/Archive/scROSHI/scROSHI_{{ version }}.tar.gz + sha256: 332ed379c27d4becfae31f164e6267850cd927dbb357c3a77de1f320d65baf96 + +build: + number: 0 + run_exports: + - {{ pin_subpackage("r-scroshi", max_pin="x") }} + rpaths: + - lib/R/lib/ + - lib/ + noarch: generic + +requirements: + host: + - r-base ==4.3.2 + - bioconductor-s4vectors ==0.40.2 + - bioconductor-singlecellexperiment ==1.24.0 + - bioconductor-summarizedexperiment ==1.32.0 + - bioconductor-limma ==3.58.1 + - r-uwot ==0.1.16 + + run: + - r-base ==4.3.2 + - bioconductor-s4vectors ==0.40.2 + - bioconductor-singlecellexperiment ==1.24.0 + - bioconductor-summarizedexperiment ==1.32.0 + - bioconductor-limma ==3.58.1 + - r-uwot ==0.1.16 + +test: + commands: + - $R -e "library('scROSHI')" # [not win] + - "\"%R%\" -e \"library('scROSHI')\"" # [win] + +about: + home: https://CRAN.R-project.org/package=scROSHI + license: MIT + summary: 'scROSHI: robust supervised hierarchical identification of single cells' + license_family: MIT + license_file: + - '{{ environ["PREFIX"] }}/lib/R/share/licenses/MIT' + - LICENSE +extra: + identifiers: + - doi:10.1093/nargab/lqad058