DESCRIPTION

Package: scDAPP
Title: single-cell Differential Analysis and Processing Pipeline
Version: 1.2.2
Authors@R: 
    person("Alexander", "Ferrena", , "alexanderferrena@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-9578-8683"))
Description: End to end pipeline for cross-group analysis of single cell transcriptomic data.
License: GPL (>= 3)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Depends: 
    R (>= 4.0)
biocViews:
    edgeR,
    glmGamPoi,
    fgsea,
    ComplexHeatmap,
    sparseMatrixStats,
    clusterProfiler
Remotes:
    chris-mcginnis-ucsf/DoubletFinder,
    phipsonlab/speckle,
    bioinfodz/RISC,
    immunogenomics/presto
Suggests:
    presto,
    aPEAR,
    clusterProfiler
Imports: 
    tidyverse,
    Matrix,
    irlba,
    Seurat (>= 5.0),
    patchwork,
    ggdendro,
    foreach,
    doParallel,
    ggalluvial,
    ggfittext,
    ggrepel,
    msigdbr,
    hdf5r,
    edgeR,
    glmGamPoi,
    fgsea,
    ComplexHeatmap,
    DoubletFinder,
    ggplot2,
    outliers,
    patchwork,
    stringr,
    dplyr,
    speckle,
    statmod,
    igraph,
    FNN,
    sparseMatrixStats,
    RISC (>= 1.7.0),
    viridis,
    BiocManager
LazyData: true