From 1cf3af7f23fb164e07536e36a128d38890f881a2 Mon Sep 17 00:00:00 2001
From: Arya Massarat <23412689+aryarm@users.noreply.github.com>
Date: Sun, 1 Jan 2023 10:24:48 -0800
Subject: [PATCH 1/7] revert r-bio to simple dependency layout

---
 r-bio.yaml | 494 ++++-------------------------------------------------
 1 file changed, 32 insertions(+), 462 deletions(-)

diff --git a/r-bio.yaml b/r-bio.yaml
index 782dd5e..5beff37 100644
--- a/r-bio.yaml
+++ b/r-bio.yaml
@@ -1,470 +1,40 @@
 name: r-bio
 channels:
 - conda-forge
-- defaults
 - bioconda
-- r
-- anaconda
+- nodefaults
 dependencies:
-- _libgcc_mutex=0.1=conda_forge
-- _openmp_mutex=4.5=1_gnu
-- _r-mutex=1.0.1=anacondar_1
-- admixture=1.3.0=0
-- argon2-cffi=20.1.0=py38h497a2fe_2
-- async_generator=1.10=py_0
-- attrs=20.3.0=pyhd3deb0d_0
-- backcall=0.2.0=pyh9f0ad1d_0
-- backports=1.0=py_2
-- backports.functools_lru_cache=1.6.1=py_0
-- bcftools=1.11=h7c999a4_0
-- bedtools=2.30.0=hc088bd4_0
-- binutils_impl_linux-64=2.35.1=h193b22a_2
-- binutils_linux-64=2.35=h67ddf6f_30
-- bioconductor-annotate=1.64.0=r36_0
-- bioconductor-annotationdbi=1.48.0=r36_0
-- bioconductor-biobase=2.46.0=r36h516909a_0
-- bioconductor-biocfilecache=1.10.0=r36_0
-- bioconductor-biocgenerics=0.32.0=r36_0
-- bioconductor-biocparallel=1.20.0=r36he1b5a44_0
-- bioconductor-biomart=2.42.0=r36_0
-- bioconductor-compcoder=1.22.0=r36_0
-- bioconductor-delayedarray=0.12.0=r36h516909a_0
-- bioconductor-deseq2=1.26.0=r36he1b5a44_0
-- bioconductor-dnacopy=1.60.0=r36h6e990d7_0
-- bioconductor-edger=3.28.0=r36he1b5a44_0
-- bioconductor-genefilter=1.68.0=r36hc99cbb1_0
-- bioconductor-geneplotter=1.64.0=r36_0
-- bioconductor-genomeinfodb=1.22.0=r36_0
-- bioconductor-genomeinfodbdata=1.2.2=r36_0
-- bioconductor-genomicranges=1.38.0=r36h516909a_0
-- bioconductor-go.db=3.10.0=r36_0
-- bioconductor-impute=1.60.0=r36h6e990d7_0
-- bioconductor-iranges=2.20.0=r36h516909a_0
-- bioconductor-limma=3.42.0=r36h516909a_0
-- bioconductor-org.mm.eg.db=3.10.0=r36_0
-- bioconductor-preprocesscore=1.48.0=r36h516909a_0
-- bioconductor-s4vectors=0.24.0=r36h516909a_0
-- bioconductor-summarizedexperiment=1.16.0=r36_0
-- bioconductor-xvector=0.26.0=r36h516909a_0
-- bioconductor-zlibbioc=1.32.0=r36h516909a_0
-- biopython=1.78=py38h497a2fe_2
-- bleach=3.3.0=pyh44b312d_0
-- bowtie2=2.4.2=py38h1c8e9b9_1
-- brotlipy=0.7.0=py38h497a2fe_1001
-- bwa=0.7.17=hed695b0_7
-- bwa-mem2=2.2=he513fc3_0
-- bwidget=1.9.14=ha770c72_0
-- bzip2=1.0.8=h7f98852_4
-- c-ares=1.17.1=h7f98852_1
-- ca-certificates=2020.12.5=ha878542_0
-- cairo=1.16.0=h9f066cc_1006
-- certifi=2020.12.5=py38h578d9bd_1
-- cffi=1.14.5=py38ha65f79e_0
-- chardet=4.0.0=py38h578d9bd_1
-- click=7.1.2=pyh9f0ad1d_0
-- cnvkit=0.9.8=py_0
-- colorama=0.4.4=pyh9f0ad1d_0
-- coloredlogs=15.0=py38h578d9bd_0
-- colormath=3.0.0=py_2
-- commonmark=0.9.1=py_0
-- cryptography=3.4.6=py38ha5dfef3_0
-- curl=7.75.0=h979ede3_0
-- cycler=0.10.0=py_2
-- decorator=4.4.2=py_0
-- defusedxml=0.7.1=pyhd8ed1ab_0
-- entrypoints=0.3=pyhd8ed1ab_1003
-- fastqc=0.11.9=0
-- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
-- fontconfig=2.13.1=hba837de_1004
-- freetype=2.10.4=h0708190_1
-- fribidi=1.0.10=h36c2ea0_0
-- future=0.18.2=py38h578d9bd_3
-- gatk4=4.2.0.0=0
-- gcc_impl_linux-64=7.5.0=hda68d29_13
-- gcc_linux-64=7.5.0=h47867f9_30
-- gettext=0.19.8.1=h0b5b191_1005
-- gfortran_impl_linux-64=7.5.0=h56cb351_18
-- gfortran_linux-64=7.5.0=h78c8a43_30
-- gmp=6.2.1=h58526e2_0
-- graphite2=1.3.13=h58526e2_1001
-- gsl=2.6=he838d99_2
-- gxx_impl_linux-64=7.5.0=h64c220c_13
-- gxx_linux-64=7.5.0=h555fc39_30
-- harfbuzz=2.7.2=ha5b49bf_1
-- homer=4.11=pl526hc9558a2_3
-- htseq=0.13.5=py38h1773678_0
-- htslib=1.11=hd3b49d5_1
-- humanfriendly=9.1=py38h578d9bd_0
-- icu=67.1=he1b5a44_0
-- idna=2.10=pyh9f0ad1d_0
-- importlib-metadata=3.7.2=py38h578d9bd_0
-- ipykernel=5.5.0=py38h81c977d_1
-- ipython=7.21.0=py38h81c977d_0
-- ipython_genutils=0.2.0=py_1
-- jedi=0.18.0=py38h578d9bd_2
-- jinja2=2.11.3=pyh44b312d_0
-- joblib=1.0.1=pyhd8ed1ab_0
-- jpeg=9d=h36c2ea0_0
-- jsonschema=3.2.0=pyhd8ed1ab_3
-- jupyter_client=6.1.11=pyhd8ed1ab_1
-- jupyter_core=4.7.1=py38h578d9bd_0
-- jupyterlab_pygments=0.1.2=pyh9f0ad1d_0
-- kernel-headers_linux-64=2.6.32=h77966d4_13
-- kiwisolver=1.3.1=py38h1fd1430_1
-- krb5=1.17.2=h926e7f8_0
-- lcms2=2.12=hddcbb42_0
-- ld_impl_linux-64=2.35.1=hea4e1c9_2
-- libblas=3.9.0=8_openblas
-- libcblas=3.9.0=8_openblas
-- libcurl=7.75.0=hc4aaa36_0
-- libdeflate=1.6=h516909a_0
-- libedit=3.1.20191231=he28a2e2_2
-- libev=4.33=h516909a_1
-- libffi=3.3=h58526e2_2
-- libgcc-ng=9.3.0=h2828fa1_18
-- libgfortran-ng=7.5.0=h14aa051_18
-- libgfortran4=7.5.0=h14aa051_18
-- libglib=2.66.7=h3e27bee_1
-- libgomp=9.3.0=h2828fa1_18
-- libiconv=1.16=h516909a_0
-- libidn2=2.3.0=h516909a_0
-- liblapack=3.9.0=8_openblas
-- libnghttp2=1.43.0=h812cca2_0
-- libopenblas=0.3.12=pthreads_hb3c22a3_1
-- libpng=1.6.37=h21135ba_2
-- libsodium=1.0.18=h36c2ea0_1
-- libssh2=1.9.0=ha56f1ee_6
-- libstdcxx-ng=9.3.0=h6de172a_18
-- libtiff=4.2.0=hdc55705_0
-- libunistring=0.9.10=h14c3975_0
-- libuuid=2.32.1=h7f98852_1000
-- libwebp-base=1.2.0=h7f98852_0
-- libxcb=1.13=h7f98852_1003
-- libxml2=2.9.10=h68273f3_2
-- lz4-c=1.9.3=h9c3ff4c_0
-- lzstring=1.0.4=py_1001
-- make=4.3=hd18ef5c_1
-- markdown=3.3.4=pyhd8ed1ab_0
-- markupsafe=1.1.1=py38h497a2fe_3
-- matplotlib-base=3.3.4=py38h0efea84_0
-- mistune=0.8.4=py38h497a2fe_1003
-- multiqc=1.10=py_1
-- nbclient=0.5.3=pyhd8ed1ab_0
-- nbconvert=6.0.7=py38h578d9bd_3
-- nbformat=5.1.2=pyhd8ed1ab_1
-- ncurses=6.2=h58526e2_4
-- nest-asyncio=1.4.3=pyhd8ed1ab_0
-- networkx=2.5=py_0
-- notebook=6.2.0=py38h578d9bd_0
-- numpy=1.20.1=py38h18fd61f_0
-- olefile=0.46=pyh9f0ad1d_1
-- openjdk=8.0.265=h516909a_0
-- openssl=1.1.1j=h7f98852_0
-- packaging=20.9=pyh44b312d_0
-- pandas=1.2.3=py38h51da96c_0
-- pandoc=2.12=h7f98852_0
-- pandocfilters=1.4.2=py_1
-- pango=1.42.4=h69149e4_5
-- parso=0.8.1=pyhd8ed1ab_0
-- pcre=8.44=he1b5a44_0
-- perl=5.26.2=h36c2ea0_1008
-- pexpect=4.8.0=pyh9f0ad1d_2
-- pickleshare=0.7.5=py_1003
-- pillow=8.1.2=py38ha0e1e83_0
-- pip=21.0.1=pyhd8ed1ab_0
-- pixman=0.40.0=h36c2ea0_0
-- plink=1.90b6.18=h516909a_0
-- pomegranate=0.13.3=py38h82cb98a_1
-- prometheus_client=0.9.0=pyhd3deb0d_0
-- prompt-toolkit=3.0.17=pyha770c72_0
-- pthread-stubs=0.4=h36c2ea0_1001
-- ptyprocess=0.7.0=pyhd3deb0d_0
-- pycparser=2.20=pyh9f0ad1d_2
-- pyfaidx=0.5.9.5=pyh3252c3a_0
-- pygments=2.8.1=pyhd8ed1ab_0
-- pyopenssl=20.0.1=pyhd8ed1ab_0
-- pyparsing=2.4.7=pyh9f0ad1d_0
-- pyrsistent=0.17.3=py38h497a2fe_2
-- pysam=0.16.0.1=py38hbdc2ae9_1
-- pysocks=1.7.1=py38h578d9bd_3
-- python=3.8.8=hffdb5ce_0_cpython
-- python-dateutil=2.8.1=py_0
-- python_abi=3.8=1_cp38
-- pytz=2021.1=pyhd8ed1ab_0
-- pyyaml=5.4.1=py38h497a2fe_0
-- pyzmq=22.0.3=py38h2035c66_1
-- r-acepack=1.4.1=r36h31ca83e_1006
-- r-askpass=1.1=r36hcdcec82_2
-- r-assertthat=0.2.1=r36h6115d3f_2
-- r-backports=1.2.1=r36hcfec24a_0
-- r-base=3.6.3=hd272fe0_4
-- r-base64enc=0.1_3=r36hcdcec82_1004
-- r-bazar=1.0.11=r36h6115d3f_1
-- r-bh=1.75.0_0=r36hc72bb7e_0
-- r-bit=4.0.4=r36hcdcec82_0
-- r-bit64=4.0.5=r36hcdcec82_0
-- r-bitops=1.0_6=r36hcdcec82_1004
-- r-blob=1.2.1=r36h6115d3f_1
-- r-boot=1.3_27=r36hc72bb7e_0
-- r-brio=1.1.1=r36hcfec24a_0
-- r-broom=0.7.5=r36hc72bb7e_0
-- r-bslib=0.2.4=r36hc72bb7e_0
-- r-cachem=1.0.4=r36hcfec24a_0
-- r-callr=3.5.1=r36h142f84f_0
-- r-caret=6.0_86=r36hcdcec82_2
-- r-catools=1.18.1=r36h03ef668_0
-- r-cellranger=1.1.0=r36h6115d3f_1003
-- r-cghflasso=0.2_1=r36h6e990d7_1005
-- r-checkmate=2.0.0=r36hcdcec82_1
-- r-class=7.3_18=r36hcfec24a_0
-- r-cli=2.3.1=r36hc72bb7e_0
-- r-clipr=0.7.1=r36h142f84f_0
-- r-clue=0.3_58=r36h7f98852_0
-- r-cluster=2.1.0=r36h31ca83e_4
-- r-codetools=0.2_18=r36hc72bb7e_0
-- r-colorspace=2.0_0=r36h9e2df91_0
-- r-commonmark=1.7=r36hcdcec82_1002
-- r-cpp11=0.2.6=r36hc72bb7e_0
-- r-crayon=1.4.1=r36hc72bb7e_0
-- r-crul=1.1.0=r36h785f33e_0
-- r-curl=4.3=r36hcdcec82_1
-- r-data.table=1.14.0=r36hcfec24a_0
-- r-dbi=1.1.1=r36hc72bb7e_0
-- r-dbplyr=2.1.0=r36hc72bb7e_0
-- r-deoptimr=1.0_8=r36h6115d3f_1003
-- r-desc=1.3.0=r36hc72bb7e_0
-- r-diffobj=0.3.3=r36hcfec24a_0
-- r-digest=0.6.27=r36h1b71b39_0
-- r-doparallel=1.0.16=r36h142f84f_0
-- r-dplyr=1.0.5=r36h03ef668_0
-- r-dynamictreecut=1.63_1=r36h6115d3f_1003
-- r-ellipsis=0.3.1=r36hcdcec82_0
-- r-essentials=3.6=r36_2002
-- r-evaluate=0.14=r36h6115d3f_2
-- r-fansi=0.4.2=r36hcfec24a_0
-- r-farver=2.1.0=r36h03ef668_0
-- r-fastcluster=1.1.25=r36hc99cbb1_1004
-- r-fastmap=1.1.0=r36h03ef668_0
-- r-fbasics=3042.89.1=r36h516909a_1
-- r-fit.models=0.64=r36h6115d3f_0
-- r-forcats=0.5.1=r36hc72bb7e_0
-- r-foreach=1.5.1=r36h142f84f_0
-- r-foreign=0.8_76=r36hcdcec82_1
-- r-formatr=1.7=r36h6115d3f_2
-- r-formula=1.2_4=r36h142f84f_0
-- r-fs=1.5.0=r36h0357c0b_0
-- r-futile.logger=1.4.3=r36h6115d3f_1003
-- r-futile.options=1.0.1=r36h6115d3f_1002
-- r-gdata=2.18.0=r36h6115d3f_1003
-- r-generics=0.1.0=r36hc72bb7e_0
-- r-ggplot2=3.3.3=r36hc72bb7e_0
-- r-gistr=0.9.0=r36h6115d3f_0
-- r-glmnet=4.0_2=r36h31ca83e_1
-- r-glue=1.4.2=r36hcfec24a_0
-- r-gower=0.2.2=r36hcdcec82_0
-- r-gplots=3.1.1=r36hc72bb7e_0
-- r-gridextra=2.3=r36h6115d3f_1003
-- r-gss=2.2_2=r36h6e990d7_1
-- r-gtable=0.3.0=r36h6115d3f_3
-- r-gtools=3.8.2=r36hcdcec82_1
-- r-haven=2.3.1=r36hde08347_0
-- r-hexbin=1.28.1=r36h31ca83e_2
-- r-highr=0.8=r36h6115d3f_2
-- r-hmisc=4.4_1=r36h31ca83e_1
-- r-hms=1.0.0=r36hc72bb7e_0
-- r-htmltable=2.1.0=r36h6115d3f_0
-- r-htmltools=0.5.1.1=r36h03ef668_0
-- r-htmlwidgets=1.5.3=r36hc72bb7e_0
-- r-httpcode=0.3.0=r36_1
-- r-httpuv=1.5.5=r36h03ef668_0
-- r-httr=1.4.2=r36h6115d3f_0
-- r-igraph=1.2.6=r36h084b37e_1
-- r-ipred=0.9_11=r36hcfec24a_0
-- r-irdisplay=1.0=r36hd8ed1ab_0
-- r-irkernel=1.1.1=r36h6115d3f_0
-- r-isoband=0.2.4=r36h03ef668_0
-- r-iterators=1.0.13=r36h142f84f_0
-- r-jpeg=0.1_8.1=r36hcdcec82_1
-- r-jquerylib=0.1.3=r36hc72bb7e_0
-- r-jsonlite=1.7.2=r36hcfec24a_0
-- r-kernsmooth=2.23_18=r36h7679c2e_0
-- r-kimisc=0.4=r36h6115d3f_1002
-- r-knitr=1.31=r36hc72bb7e_0
-- r-labeling=0.4.2=r36h142f84f_0
-- r-lambda.r=1.2.4=r36h6115d3f_1
-- r-later=1.1.0.1=r36h0357c0b_0
-- r-lattice=0.20_41=r36hcfec24a_3
-- r-latticeextra=0.6_29=r36h6115d3f_1
-- r-lava=1.6.9=r36hc72bb7e_0
-- r-lazyeval=0.2.2=r36hcdcec82_2
-- r-lifecycle=1.0.0=r36hc72bb7e_0
-- r-locfit=1.5_9.4=r36hcdcec82_1
-- r-lubridate=1.7.10=r36h03ef668_0
-- r-magrittr=2.0.1=r36hcfec24a_1
-- r-maps=3.3.0=r36hcdcec82_1004
-- r-markdown=1.1=r36hcfec24a_1
-- r-mass=7.3_53.1=r36hcfec24a_0
-- r-matrix=1.3_2=r36he454529_0
-- r-matrixstats=0.58.0=r36hcfec24a_0
-- r-memoise=2.0.0=r36hc72bb7e_0
-- r-mgcv=1.8_34=r36he454529_0
-- r-mime=0.10=r36hcfec24a_0
-- r-modeest=2.4.0=r36_1
-- r-modelmetrics=1.2.2.2=r36h0357c0b_1
-- r-modelr=0.1.8=r36h6115d3f_0
-- r-munsell=0.5.0=r36h6115d3f_1003
-- r-mvtnorm=1.1_1=r36h31ca83e_1
-- r-netindices=1.4.4=r36h6115d3f_0
-- r-nhanes=2.1.0=r36h6115d3f_0
-- r-nlme=3.1_150=r36h31ca83e_0
-- r-nnet=7.3_15=r36hcfec24a_0
-- r-numderiv=2016.8_1.1=r36h6115d3f_3
-- r-openssl=1.4.3=r36he5c4762_0
-- r-pbdzmq=0.3_5=r36h42bf92c_1
-- r-pcapp=1.9_73=r36h51c796c_1003
-- r-permute=0.9_5=r36h6115d3f_3
-- r-pillar=1.5.1=r36hc72bb7e_0
-- r-pkgbuild=1.2.0=r36hc72bb7e_0
-- r-pkgconfig=2.0.3=r36h6115d3f_1
-- r-pkgload=1.2.0=r36h03ef668_0
-- r-plogr=0.2.0=r36h6115d3f_1003
-- r-plyr=1.8.6=r36h0357c0b_1
-- r-png=0.1_7=r36hcdcec82_1004
-- r-praise=1.0.0=r36h6115d3f_1004
-- r-prettyunits=1.1.1=r36h6115d3f_1
-- r-proc=1.17.0.1=r36h03ef668_0
-- r-processx=3.4.5=r36hcfec24a_0
-- r-prodlim=2019.11.13=r36h0357c0b_1
-- r-progress=1.2.2=r36h6115d3f_2
-- r-promises=1.2.0.1=r36h03ef668_0
-- r-pryr=0.1.4=r36h0357c0b_1004
-- r-ps=1.6.0=r36hcfec24a_0
-- r-purrr=0.3.4=r36hcdcec82_1
-- r-quantmod=0.4.18=r36hc72bb7e_0
-- r-r6=2.5.0=r36hc72bb7e_0
-- r-randomforest=4.6_14=r36h31ca83e_1004
-- r-rappdirs=0.3.3=r36hcfec24a_0
-- r-rbokeh=0.5.1=r36h6115d3f_0
-- r-rcolorbrewer=1.1_2=r36h6115d3f_1003
-- r-rcpp=1.0.6=r36h03ef668_0
-- r-rcpparmadillo=0.10.2.2.0=r36h306847c_0
-- r-rcurl=1.98_1.2=r36hcdcec82_1
-- r-readr=1.4.0=r36h1b71b39_0
-- r-readxl=1.3.1=r36hde08347_4
-- r-recipes=0.1.15=r36hc72bb7e_0
-- r-recommended=3.6=r36_1004
-- r-rematch=1.0.1=r36h6115d3f_1003
-- r-rematch2=2.1.2=r36h6115d3f_1
-- r-repr=1.1.3=r36h785f33e_0
-- r-reprex=1.0.0=r36hc72bb7e_0
-- r-reshape2=1.4.4=r36h0357c0b_1
-- r-rlang=0.4.10=r36hcfec24a_0
-- r-rmarkdown=2.7=r36hc72bb7e_0
-- r-rmutil=1.1.5=r36h9bbef5b_0
-- r-robust=0.5_0.0=r36hc3f0d1c_2
-- r-robustbase=0.93_6=r36hc3f0d1c_2
-- r-rocr=1.0_11=r36h6115d3f_1
-- r-rpart=4.1_15=r36hcfec24a_2
-- r-rprojroot=2.0.2=r36hc72bb7e_0
-- r-rrcov=1.5_5=r36hed91ed1_1
-- r-rsqlite=2.2.4=r36h03ef668_0
-- r-rstudioapi=0.13=r36hc72bb7e_0
-- r-rvest=1.0.0=r36hc72bb7e_0
-- r-sass=0.3.1=r36h03ef668_0
-- r-scales=1.1.1=r36h6115d3f_0
-- r-selectr=0.4_2=r36h6115d3f_1
-- r-shape=1.4.5=r36_0
-- r-shiny=1.6.0=r36hc72bb7e_0
-- r-sm=2.2_5.6=r36h31ca83e_1004
-- r-snow=0.4_3=r36h6115d3f_1002
-- r-sourcetools=0.1.7=r36he1b5a44_1002
-- r-spatial=7.3_13=r36hcfec24a_0
-- r-squarem=2021.1=r36hc72bb7e_0
-- r-stable=1.1.4=r36hcdcec82_1
-- r-stabledist=0.7_1=r36_2003
-- r-statip=0.2.3=r36hcdcec82_1
-- r-stringi=1.5.3=r36hca8494e_0
-- r-stringr=1.4.0=r36h6115d3f_2
-- r-survival=3.2_7=r36hcfec24a_0
-- r-sys=3.4=r36hcdcec82_0
-- r-testthat=3.0.2=r36h03ef668_0
-- r-tibble=3.1.0=r36hcfec24a_1
-- r-tidyr=1.1.3=r36h03ef668_0
-- r-tidyselect=1.1.0=r36h6115d3f_0
-- r-tidyverse=1.3.0=r36h6115d3f_2
-- r-timedate=3043.102=r36h6115d3f_1002
-- r-timeseries=3062.100=r36_1
-- r-tinytex=0.30=r36hc72bb7e_0
-- r-triebeard=0.3.0=r36he1b5a44_1003
-- r-ttr=0.24.2=r36hcdcec82_0
-- r-urltools=1.7.3=r36h0357c0b_2
-- r-utf8=1.1.4=r36hcdcec82_1003
-- r-uuid=0.1_4=r36hcdcec82_1
-- r-vctrs=0.3.6=r36hcfec24a_0
-- r-vegan=2.5_6=r36hc3f0d1c_3
-- r-vioplot=0.3.5=r36h6115d3f_0
-- r-viridis=0.5.1=r36h6115d3f_1004
-- r-viridislite=0.3.0=r36h6115d3f_1003
-- r-waldo=0.2.5=r36hc72bb7e_0
-- r-wgcna=1.69=r36h0357c0b_0
-- r-withr=2.4.1=r36hc72bb7e_0
-- r-xfun=0.20=r36hcfec24a_0
-- r-xml=3.99_0.3=r36hcdcec82_1
-- r-xml2=1.3.2=r36h0357c0b_1
-- r-xtable=1.8_4=r36h6115d3f_3
-- r-xts=0.12.1=r36hcdcec82_0
-- r-yaml=2.2.1=r36hcfec24a_1
-- r-zeallot=0.1.0=r36h6115d3f_1002
-- r-zoo=1.8_9=r36hcfec24a_0
-- readline=8.0=he28a2e2_2
-- reportlab=3.5.65=py38hadf75a6_0
-- requests=2.25.1=pyhd3deb0d_0
-- rich=9.13.0=py38h578d9bd_0
-- samtools=1.11=h6270b1f_0
-- scipy=1.5.3=py38h828c644_0
-- sed=4.8=he412f7d_0
-- send2trash=1.5.0=py_0
-- setuptools=49.6.0=py38h578d9bd_3
-- simplejson=3.17.2=py38h497a2fe_2
-- six=1.15.0=pyh9f0ad1d_0
-- spectra=0.0.11=py_1
-- sqlite=3.34.0=h74cdb3f_0
-- star=2.7.8a=0
-- subread=2.0.1=hed695b0_0
-- sysroot_linux-64=2.12=h77966d4_13
-- tbb=2020.2
-- terminado=0.9.2=py38h578d9bd_0
-- testpath=0.4.4=py_0
-- tk=8.6.10=h21135ba_1
-- tktable=2.10=hb7b940f_3
-- tornado=6.1=py38h497a2fe_1
-- traitlets=5.0.5=py_0
-- typing_extensions=3.7.4.3=py_0
-- unzip=6.0=h7f98852_2
-- urllib3=1.26.3=pyhd8ed1ab_0
-- varscan=2.4.4=0
-- wcwidth=0.2.5=pyh9f0ad1d_2
-- webencodings=0.5.1=py_1
-- wget=1.20.1=h22169c7_0
-- wheel=0.36.2=pyhd3deb0d_0
-- xorg-kbproto=1.0.7=h7f98852_1002
-- xorg-libice=1.0.10=h7f98852_0
-- xorg-libsm=1.2.3=hd9c2040_1000
-- xorg-libx11=1.7.0=h7f98852_0
-- xorg-libxau=1.0.9=h7f98852_0
-- xorg-libxdmcp=1.1.3=h7f98852_0
-- xorg-libxext=1.3.4=h7f98852_1
-- xorg-libxrender=0.9.10=h7f98852_1003
-- xorg-renderproto=0.11.1=h7f98852_1002
-- xorg-xextproto=7.3.0=h7f98852_1002
-- xorg-xproto=7.0.31=h7f98852_1007
-- xz=5.2.5=h516909a_1
-- yaml=0.2.5=h516909a_0
-- zeromq=4.3.4=h9c3ff4c_0
-- zip=3.0=h14c3975_1
-- zipp=3.4.1=pyhd8ed1ab_0
-- zlib=1.2.11=h516909a_1010
-- zstd=1.4.9=ha95c52a_0
+- bioconductor-biomart
+- bioconductor-deseq2
+- bioconductor-compcoder
+- bioconductor-org.mm.eg.db
+- r-wgcna
+- r-igraph
+- r-netindices
+- python=3.8
+- pip
+- r-vegan
+- r-nhanes
+- bowtie2
+- plink
+- homer
+- bedtools
+- samtools
+- bcftools
+- subread
+- htseq
+- bwa
+- bwa-mem2
+- star
+- fastqc
+- samtools
+- multiqc
+- bowtie2
+- cnvkit
+- zip
+- varscan
+- gatk4
+- admixture
 - bioconductor-apeglm
 - r-palmerpenguins
 - r-ggridges

From 86e2a67123c8d9d12a74f18d0f0f56483ad0d392 Mon Sep 17 00:00:00 2001
From: Arya Massarat <23412689+aryarm@users.noreply.github.com>
Date: Sun, 1 Jan 2023 10:31:48 -0800
Subject: [PATCH 2/7] specify exact versions for py-bio env

---
 py-bio.yaml | 51 +++++++++++++++++++++++++--------------------------
 1 file changed, 25 insertions(+), 26 deletions(-)

diff --git a/py-bio.yaml b/py-bio.yaml
index 7501eb3..e8b5232 100644
--- a/py-bio.yaml
+++ b/py-bio.yaml
@@ -1,31 +1,30 @@
 name: py-bio
 channels:
 - conda-forge
-- defaults
 - bioconda
-- anaconda
+- nodefaults
 dependencies:
-- python=3.7
-- pip
-- goatools
-- networkx
-- gseapy
-- scanpy
-- numpy
-- seaborn
-- scipy
-- matplotlib
-- plink
-- homer
-- bedtools
-- samtools
-- bcftools
-- subread
-- htseq
-- bwa
-- bwa-mem2
-- star
-- fastqc
-- samtools
-- multiqc
-- bowtie2
+- conda-forge::python==3.7.12
+- conda-forge::pip==22.0.3
+- bioconda::goatools==1.1.12
+- conda-forge::networkx==2.6.3
+- bioconda::gseapy==0.10.8
+- conda-forge::scanpy==1.8.2
+- conda-forge::numpy==1.21.5
+- conda-forge::seaborn==0.11.2
+- conda-forge::scipy==1.7.3
+- conda-forge::matplotlib==3.5.1
+- bioconda::plink==1.90b6.21
+- bioconda::homer==4.11
+- bioconda::bedtools==2.30.0
+- bioconda::samtools==1.15
+- bioconda::bcftools==1.15
+- bioconda::subread==2.0.1
+- bioconda::htseq==1.99.2
+- bioconda::bwa==0.7.17
+- bioconda::bwa-mem2==2.2.1
+- bioconda::star==2.7.10a
+- bioconda::fastqc==0.11.9
+- bioconda::samtools==1.15
+- bioconda::multiqc==1.12
+- bioconda::bowtie2==2.4.5

From 34c276cc7987affba5dccfd808b845685a0f11cd Mon Sep 17 00:00:00 2001
From: Arya Massarat <23412689+aryarm@users.noreply.github.com>
Date: Sun, 1 Jan 2023 10:35:09 -0800
Subject: [PATCH 3/7] specify exact versions for r-bio env

---
 r-bio.yaml | 69 +++++++++++++++++++++++++++---------------------------
 1 file changed, 35 insertions(+), 34 deletions(-)

diff --git a/r-bio.yaml b/r-bio.yaml
index 5beff37..3571212 100644
--- a/r-bio.yaml
+++ b/r-bio.yaml
@@ -2,39 +2,40 @@ name: r-bio
 channels:
 - conda-forge
 - bioconda
+- r
 - nodefaults
 dependencies:
-- bioconductor-biomart
-- bioconductor-deseq2
-- bioconductor-compcoder
-- bioconductor-org.mm.eg.db
-- r-wgcna
-- r-igraph
-- r-netindices
-- python=3.8
-- pip
-- r-vegan
-- r-nhanes
-- bowtie2
-- plink
-- homer
-- bedtools
-- samtools
-- bcftools
-- subread
-- htseq
-- bwa
-- bwa-mem2
-- star
-- fastqc
-- samtools
-- multiqc
-- bowtie2
-- cnvkit
-- zip
-- varscan
-- gatk4
-- admixture
-- bioconductor-apeglm
-- r-palmerpenguins
-- r-ggridges
+- bioconda::bioconductor-biomart==2.42.0
+- bioconda::bioconductor-deseq2==1.26.0
+- bioconda::bioconductor-compcoder==1.22.0
+- bioconda::bioconductor-org.mm.eg.db==3.10.0
+- bioconda::r-wgcna==1.69
+- conda-forge::r-igraph==1.2.6
+- r::r-netindices==1.4.4
+- conda-forge::python==3.8
+- conda-forge::pip==21.0.1
+- conda-forge::r-vegan==2.5_6
+- r::r-nhanes==2.1.0
+- bioconda::bowtie2==2.4.2
+- bioconda::plink==1.90b6.18
+- bioconda::homer==4.11
+- bioconda::bedtools==2.30.0
+- bioconda::samtools==1.11
+- bioconda::bcftools==1.11
+- bioconda::subread==2.0.1
+- bioconda::htseq==0.13.5
+- bioconda::bwa==0.7.17
+- bioconda::bwa-mem2==2.2
+- bioconda::star==2.7.8a
+- bioconda::fastqc==0.11.9
+- bioconda::samtools==1.11
+- bioconda::multiqc==1.10
+- bioconda::bowtie2==2.4.2
+- bioconda::cnvkit==0.9.8
+- conda-forge::zip==3.0
+- bioconda::varscan==2.4.4
+- bioconda::gatk4==4.2.0.0
+- bioconda::admixture==1.3.0
+- bioconda::bioconductor-apeglm==1.8.0
+- conda-forge::r-palmerpenguins==0.1.0
+- conda-forge::r-ggridges==0.5.3

From 5b4d6847671f70f751636f4f690684a38acc59ab Mon Sep 17 00:00:00 2001
From: Arya Massarat <23412689+aryarm@users.noreply.github.com>
Date: Sun, 1 Jan 2023 10:45:15 -0800
Subject: [PATCH 4/7] specify exact versions for scanpy_2021 env

---
 scanpy_2021.yaml | 34 +++++++++++++++++-----------------
 1 file changed, 17 insertions(+), 17 deletions(-)

diff --git a/scanpy_2021.yaml b/scanpy_2021.yaml
index c401322..e15adaf 100644
--- a/scanpy_2021.yaml
+++ b/scanpy_2021.yaml
@@ -2,21 +2,21 @@ name: scanpy_2021
 channels:
   - conda-forge
   - bioconda
-  - defaults
+  - nodefaults
 dependencies:
-  - python=3.8
-  - seaborn
-  - pytables
-  - scikit-learn
-  - statsmodels
-  - numba
-  - python-igraph
-  - leidenalg
-  - ipykernel
-  - gprofiler-official
-  - rpy2
-  - jupyterlab
-  - r-matrix
-  - scanpy
-  - louvain
-  - anndata2ri
+  - conda-forge::python==3.8
+  - conda-forge::seaborn==0.11.2
+  - conda-forge::pytables==3.7.0
+  - conda-forge::scikit-learn==1.0.2
+  - conda-forge::statsmodels==0.13.2
+  - conda-forge::numba==0.55.1
+  - conda-forge::python-igraph==0.9.9
+  - conda-forge::leidenalg==0.8.9
+  - conda-forge::ipykernel==6.9.1
+  - bioconda::gprofiler-official==1.0.0
+  - conda-forge::rpy2==3.4.5
+  - conda-forge::jupyterlab==3.2.9
+  - conda-forge::r-matrix==1.4_0
+  - conda-forge::scanpy==1.8.2
+  - conda-forge::louvain==0.7.1
+  - bioconda::anndata2ri==1.0.6

From 560c17a9594557ae6f616fb9da2b0db241acb124 Mon Sep 17 00:00:00 2001
From: Arya Massarat <23412689+aryarm@users.noreply.github.com>
Date: Sun, 1 Jan 2023 10:52:53 -0800
Subject: [PATCH 5/7] specify exact versions for spatial-tx env

---
 spatial-tx.yml | 19 ++++++++++---------
 1 file changed, 10 insertions(+), 9 deletions(-)

diff --git a/spatial-tx.yml b/spatial-tx.yml
index 34112cb..3b45958 100644
--- a/spatial-tx.yml
+++ b/spatial-tx.yml
@@ -1,14 +1,15 @@
 name: spatial-tx
 channels:
-  - defaults
+  - conda-forge
+  - bioconda
+  - nodefaults
 dependencies:
-  - seaborn
-  - leidenalg
-  - jupyter
-  - ipykernel
-  - pip
+  - conda-forge::seaborn==0.11.2
+  - conda-forge::leidenalg==0.8.9
+  - conda-forge::ipykernel==6.4.1
+  - conda-forge::pip==21.2.4
+  - bioconda::scanpy==1.6.1
+  - conda-forge::scikit-learn==0.24.1
+  - bioconda::starfish==0.2.1
   - pip:
-    - scanpy==1.6.1
-    - scikit-learn==0.24.1
     - spatialde==1.1.3
-    - starfish==0.2.1
\ No newline at end of file

From c50d1bc7d3fccd1d93ca05ea7c48bf354962f8cf Mon Sep 17 00:00:00 2001
From: Arya Massarat <23412689+aryarm@users.noreply.github.com>
Date: Sun, 1 Jan 2023 11:11:53 -0800
Subject: [PATCH 6/7] specify exact channels for variant_calling env

---
 variant_calling.yml | 279 ++++++++++++++++++++++----------------------
 1 file changed, 139 insertions(+), 140 deletions(-)

diff --git a/variant_calling.yml b/variant_calling.yml
index 0391ed2..c0059db 100644
--- a/variant_calling.yml
+++ b/variant_calling.yml
@@ -1,144 +1,143 @@
 name: variant_calling
 channels:
-  - bioconda
-  - bioconda/label/cf201901
   - conda-forge
+  - bioconda
+  - nodefaults
 dependencies:
-  - _libgcc_mutex=0.1
-  - _openmp_mutex=4.5
-  - args=0.1.0
-  - atomicwrites=1.4.0
-  - attrs=20.3.0
-  - awesome-slugify=1.6.5
-  - backports=1.0
-  - backports.functools_lru_cache=1.6.1
-  - backports_abc=0.5
-  - biopython=1.68
-  - brotlipy=0.7.0
-  - bzip2=1.0.8
-  - ca-certificates=2020.12.5
-  - certifi=2019.11.28
-  - cffi=1.14.0
-  - chardet=3.0.4
-  - click=7.1.2
-  - clint=0.5.1
-  - coloredlogs=14.0
-  - configparser=3.7.3
-  - contextlib2=0.6.0.post1
-  - cryptography=2.8
-  - cycler=0.10.0
-  - cython=0.29.15
-  - cyvcf2=0.10.0
-  - dbus=1.13.6
-  - decorator=4.4.2
-  - docopt=0.6.2
-  - enum34=1.1.10
-  - expat=2.2.10
-  - fontconfig=2.13.1
-  - freetype=2.10.4
-  - funcsigs=1.0.2
-  - functools32=3.2.3.2
-  - futures=3.3.0
-  - gettext=0.19.8.1
-  - glib=2.66.3
-  - gst-plugins-base=1.14.5
-  - gstreamer=1.14.5
-  - humanfriendly=8.1
-  - icu=64.2
-  - idna=2.10
-  - importlib-metadata=1.5.0
-  - importlib_metadata=1.5.0
-  - intervaltree=3.0.2
-  - ipaddress=1.0.23
-  - jinja2=2.11.3
-  - jpeg=9d
-  - kiwisolver=1.1.0
-  - krb5=1.17.2
-  - ld_impl_linux-64=2.35.1
-  - libblas=3.9.0
-  - libcblas=3.9.0
-  - libcurl=7.71.1
-  - libedit=3.1.20191231
-  - libffi=3.2.1
-  - libgcc-ng=9.3.0
-  - libgfortran-ng=7.5.0
-  - libgfortran4=7.5.0
-  - libglib=2.66.3
-  - libgomp=9.3.0
-  - libiconv=1.16
-  - liblapack=3.9.0
-  - libopenblas=0.3.12
-  - libpng=1.6.37
-  - libssh2=1.9.0
-  - libstdcxx-ng=9.3.0
-  - libtiff=4.2.0
-  - libuuid=2.32.1
-  - libwebp-base=1.2.0
-  - libxcb=1.13
-  - libxml2=2.9.10
-  - lz4-c=1.9.3
-  - markupsafe=1.1.1
-  - matplotlib=2.2.5
-  - matplotlib-base=2.2.5
-  - mmtf-python=1.0.2
-  - monotonic=1.5
-  - more-itertools=5.0.0
-  - msgpack-python=1.0.0
-  - ncurses=6.2
-  - networkx=2.2
-  - numpy=1.16.5
-  - olefile=0.46
-  - openjdk=10.0.2
-  - openssl=1.1.1j
-  - packaging=20.9
-  - pathlib2=2.3.5
-  - pcre=8.44
-  - picard=2.18.29
-  - pillow=6.2.1
-  - pip=20.1.1
-  - pluggy=0.12.0
-  - pthread-stubs=0.4
-  - py=1.10.0
-  - pycparser=2.20
-  - pyopenssl=19.1.0
-  - pyparsing=2.4.7
-  - pyqt=5.9.2
-  - pysocks=1.7.1
-  - pytest=4.6.4
-  - pytest-runner=5.3.0
-  - python=2.7.15
-  - python-dateutil=2.8.1
-  - python_abi=2.7
-  - pytz=2020.1
-  - qt=5.9.7
-  - readline=8.0
-  - regex=2016.06.24
-  - reportlab=3.5.42
-  - requests=2.25.1
-  - scandir=1.10.0
-  - scipy=1.2.1
-  - setuptools=44.0.0
-  - singledispatch=3.6.0
-  - sip=4.19.8
-  - six=1.15.0
-  - sortedcontainers=2.3.0
-  - sqlite=3.34.0
-  - subprocess32=3.5.4
-  - tabulate=0.8.9
-  - tk=8.6.10
-  - tornado=5.1.1
-  - unidecode=1.1.2
-  - urllib3=1.26.3
-  - vcfkit=0.1.6
-  - vcflib=1.0.0_rc2
-  - wcwidth=0.2.5
-  - wheel=0.36.2
-  - xorg-libxau=1.0.9
-  - xorg-libxdmcp=1.1.3
-  - xz=5.2.5
-  - yahmm=1.1.3
-  - zipp=1.0.0
-  - zlib=1.2.11
-  - zstd=1.4.8
-  - samtools
-
+  - conda-forge::args==0.1.0
+  - conda-forge::atomicwrites==1.4.0
+  - conda-forge::attrs==20.3.0
+  - conda-forge::awesome-slugify==1.6.5
+  - conda-forge::backports==1.0
+  - conda-forge::backports.functools_lru_cache==1.6.1
+  - conda-forge::backports_abc==0.5
+  - conda-forge::backports.functools_lru_cache==1.6.1
+  - conda-forge::backports_abc==0.5
+  - bioconda::biopython==1.68
+  - conda-forge::brotlipy==0.7.0
+  - conda-forge::bzip2==1.0.8
+  - conda-forge::ca-certificates==2020.12.5
+  - conda-forge::certifi==2019.11.28
+  - conda-forge::cffi==1.14.0
+  - conda-forge::chardet==3.0.4
+  - conda-forge::click==7.1.2
+  - conda-forge::clint==0.5.1
+  - conda-forge::coloredlogs==14.0
+  - conda-forge::configparser==3.7.3
+  - conda-forge::contextlib2==0.6.0.post1
+  - conda-forge::cryptography==2.8
+  - conda-forge::cycler==0.10.0
+  - conda-forge::cython==0.29.15
+  - bioconda::cyvcf2==0.10.0
+  - conda-forge::dbus==1.13.6
+  - conda-forge::decorator==4.4.2
+  - conda-forge::docopt==0.6.2
+  - conda-forge::enum34==1.1.10
+  - conda-forge::expat==2.2.10
+  - conda-forge::fontconfig==2.13.1
+  - conda-forge::freetype==2.10.4
+  - conda-forge::funcsigs==1.0.2
+  - conda-forge::functools32==3.2.3.2
+  - conda-forge::futures==3.3.0
+  - conda-forge::gettext==0.19.8.1
+  - conda-forge::glib==2.66.3
+  - conda-forge::gst-plugins-base==1.14.5
+  - conda-forge::gstreamer==1.14.5
+  - conda-forge::humanfriendly==8.1
+  - conda-forge::icu==64.2
+  - conda-forge::idna==2.10
+  - conda-forge::importlib-metadata==1.5.0
+  - conda-forge::importlib_metadata==1.5.0
+  - conda-forge::intervaltree==3.0.2
+  - conda-forge::ipaddress==1.0.23
+  - conda-forge::jinja2==2.11.3
+  - conda-forge::jpeg==9d
+  - conda-forge::kiwisolver==1.1.0
+  - conda-forge::krb5==1.17.2
+  - conda-forge::ld_impl_linux-64==2.35.1
+  - conda-forge::libblas==3.9.0
+  - conda-forge::libcblas==3.9.0
+  - conda-forge::libcurl==7.71.1
+  - conda-forge::libedit==3.1.20191231
+  - conda-forge::libffi==3.2.1
+  - conda-forge::libgcc-ng==9.3.0
+  - conda-forge::libgfortran-ng==7.5.0
+  - conda-forge::libgfortran4==7.5.0
+  - conda-forge::libglib==2.66.3
+  - conda-forge::libgomp==9.3.0
+  - conda-forge::libiconv==1.16
+  - conda-forge::liblapack==3.9.0
+  - conda-forge::libopenblas==0.3.12
+  - conda-forge::libpng==1.6.37
+  - conda-forge::libssh2==1.9.0
+  - conda-forge::libstdcxx-ng==9.3.0
+  - conda-forge::libtiff==4.2.0
+  - conda-forge::libuuid==2.32.1
+  - conda-forge::libwebp-base==1.2.0
+  - conda-forge::libxcb==1.13
+  - conda-forge::libxml2==2.9.10
+  - conda-forge::lz4-c==1.9.3
+  - conda-forge::markupsafe==1.1.1
+  - conda-forge::matplotlib==2.2.5
+  - conda-forge::matplotlib-base==2.2.5
+  - bioconda::mmtf-python==1.0.2
+  - conda-forge::monotonic==1.5
+  - conda-forge::more-itertools==5.0.0
+  - conda-forge::msgpack-python==1.0.0
+  - conda-forge::ncurses==6.2
+  - conda-forge::networkx==2.2
+  - conda-forge::numpy==1.16.5
+  - conda-forge::olefile==0.46
+  - conda-forge::openjdk==10.0.2
+  - conda-forge::openssl==1.1.1j
+  - conda-forge::packaging==20.9
+  - conda-forge::pathlib2==2.3.5
+  - conda-forge::pcre==8.44
+  - bioconda::picard==2.18.29
+  - conda-forge::pillow==6.2.1
+  - conda-forge::pip==20.1.1
+  - conda-forge::pluggy==0.12.0
+  - conda-forge::pthread-stubs==0.4
+  - conda-forge::py==1.10.0
+  - conda-forge::pycparser==2.20
+  - conda-forge::pyopenssl==19.1.0
+  - conda-forge::pyparsing==2.4.7
+  - conda-forge::pyqt==5.9.2
+  - conda-forge::pysocks==1.7.1
+  - conda-forge::pytest==4.6.4
+  - conda-forge::pytest-runner==5.3.0
+  - conda-forge::python==2.7.15
+  - conda-forge::python-dateutil==2.8.1
+  - conda-forge::python_abi==2.7
+  - conda-forge::pytz==2020.1
+  - conda-forge::qt==5.9.7
+  - conda-forge::readline==8.0
+  - bioconda::regex==2016.06.24
+  - conda-forge::reportlab==3.5.42
+  - conda-forge::requests==2.25.1
+  - conda-forge::scandir==1.10.0
+  - conda-forge::scipy==1.2.1
+  - conda-forge::setuptools==44.0.0
+  - conda-forge::singledispatch==3.6.0
+  - conda-forge::sip==4.19.8
+  - conda-forge::six==1.15.0
+  - conda-forge::sortedcontainers==2.3.0
+  - conda-forge::sqlite==3.34.0
+  - conda-forge::subprocess32==3.5.4
+  - conda-forge::tabulate==0.8.9
+  - conda-forge::tk==8.6.10
+  - conda-forge::tornado==5.1.1
+  - conda-forge::unidecode==1.1.2
+  - conda-forge::urllib3==1.26.3
+  - bioconda::vcfkit==0.1.6
+  - bioconda::vcflib==1.0.0_rc2
+  - conda-forge::wcwidth==0.2.5
+  - conda-forge::wheel==0.36.2
+  - conda-forge::xorg-libxau==1.0.9
+  - conda-forge::xorg-libxdmcp==1.1.3
+  - conda-forge::xz==5.2.5
+  - bioconda::yahmm==1.1.3
+  - conda-forge::zipp==1.0.0
+  - conda-forge::zlib==1.2.11
+  - conda-forge::zstd==1.4.8
+  - bioconda::samtools==1.11

From 79e092279d5a4ac61dcc38bcaeb2dae9d68c29c4 Mon Sep 17 00:00:00 2001
From: Arya Massarat <23412689+aryarm@users.noreply.github.com>
Date: Sun, 1 Jan 2023 11:28:29 -0800
Subject: [PATCH 7/7] relax python version specs

---
 py-bio.yaml      | 2 +-
 r-bio.yaml       | 2 +-
 scanpy_2021.yaml | 2 +-
 3 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/py-bio.yaml b/py-bio.yaml
index e8b5232..a4e8b5c 100644
--- a/py-bio.yaml
+++ b/py-bio.yaml
@@ -4,7 +4,7 @@ channels:
 - bioconda
 - nodefaults
 dependencies:
-- conda-forge::python==3.7.12
+- conda-forge::python=3.7
 - conda-forge::pip==22.0.3
 - bioconda::goatools==1.1.12
 - conda-forge::networkx==2.6.3
diff --git a/r-bio.yaml b/r-bio.yaml
index 3571212..bf1bcbb 100644
--- a/r-bio.yaml
+++ b/r-bio.yaml
@@ -12,7 +12,7 @@ dependencies:
 - bioconda::r-wgcna==1.69
 - conda-forge::r-igraph==1.2.6
 - r::r-netindices==1.4.4
-- conda-forge::python==3.8
+- conda-forge::python=3.8
 - conda-forge::pip==21.0.1
 - conda-forge::r-vegan==2.5_6
 - r::r-nhanes==2.1.0
diff --git a/scanpy_2021.yaml b/scanpy_2021.yaml
index e15adaf..11ab216 100644
--- a/scanpy_2021.yaml
+++ b/scanpy_2021.yaml
@@ -4,7 +4,7 @@ channels:
   - bioconda
   - nodefaults
 dependencies:
-  - conda-forge::python==3.8
+  - conda-forge::python=3.8
   - conda-forge::seaborn==0.11.2
   - conda-forge::pytables==3.7.0
   - conda-forge::scikit-learn==1.0.2