Handful of (unnecessary) non-ASCII chars (and other formatting issues) in biomappings

[matentzn]

There are a handful of (IMO unnecessary) non-ASCII chars in biomappings, eg

CHEBI:202852	5-heptadeca-8′Z,11′Z,16-trienylresorcinol	skos:exactMatch	MESH:C511035	5-heptadeca-8'Z,11'Z,16-trienylresorcinol	semapv:LexicalMatching		https://creativecommons.org/publicdomain/zero/1.0/	https://github.com/biomappings/biomappings/blob/4324c1/scripts/import_gilda_mappings.py	0.95

The back tick seems to have a non ASCII encoding, I think for no good reason - they are just a handful, and they could cause a little risk for data corruption when translating back and forth between formats.

A full set can easily determined like this:

pip install tsvalid
tsvalid biomappings.sssom.tsv
tmp/biomappings.sssom.tsv:4551:6: W1: Non ASCII character in column 6 at line number 4551.
tmp/biomappings.sssom.tsv:6559:6: E3: Redundant trailing whitespace in column 6 at line number 6559.
tmp/biomappings.sssom.tsv:8164:6: E3: Redundant trailing whitespace in column 6 at line number 8164.
tmp/biomappings.sssom.tsv:10255:2: W1: Non ASCII character in column 2 at line number 10255.
tmp/biomappings.sssom.tsv:10933:2: W1: Non ASCII character in column 2 at line number 10933.
tmp/biomappings.sssom.tsv:24900:6: W1: Non ASCII character in column 6 at line number 24900.
tmp/biomappings.sssom.tsv:25292:6: E3: Redundant trailing whitespace in column 6 at line number 25292.
tmp/biomappings.sssom.tsv:25455:6: E3: Redundant trailing whitespace in column 6 at line number 25455.
tmp/biomappings.sssom.tsv:25698:6: E3: Redundant trailing whitespace in column 6 at line number 25698.
tmp/biomappings.sssom.tsv:25809:6: E3: Redundant trailing whitespace in column 6 at line number 25809.
tmp/biomappings.sssom.tsv:26360:6: W1: Non ASCII character in column 6 at line number 26360.
tmp/biomappings.sssom.tsv:26558:6: E3: Redundant trailing whitespace in column 6 at line number 26558.
tmp/biomappings.sssom.tsv:27695:6: E3: Redundant trailing whitespace in column 6 at line number 27695.
tmp/biomappings.sssom.tsv:28221:6: E3: Redundant trailing whitespace in column 6 at line number 28221.
tmp/biomappings.sssom.tsv:28339:6: E3: Redundant trailing whitespace in column 6 at line number 28339.
tmp/biomappings.sssom.tsv:28462:6: E3: Redundant trailing whitespace in column 6 at line number 28462.
tmp/biomappings.sssom.tsv:29023:6: E3: Redundant trailing whitespace in column 6 at line number 29023.
tmp/biomappings.sssom.tsv:29509:6: E3: Redundant trailing whitespace in column 6 at line number 29509.
tmp/biomappings.sssom.tsv:29861:6: E3: Redundant trailing whitespace in column 6 at line number 29861.
tmp/biomappings.sssom.tsv:31155:6: E3: Redundant trailing whitespace in column 6 at line number 31155.
tmp/biomappings.sssom.tsv:31198:6: E3: Redundant trailing whitespace in column 6 at line number 31198.
tmp/biomappings.sssom.tsv:31369:6: E3: Redundant trailing whitespace in column 6 at line number 31369.
tmp/biomappings.sssom.tsv:32152:6: E3: Redundant trailing whitespace in column 6 at line number 32152.
tmp/biomappings.sssom.tsv:32406:6: E3: Redundant trailing whitespace in column 6 at line number 32406.
tmp/biomappings.sssom.tsv:34116:6: E3: Redundant trailing whitespace in column 6 at line number 34116.
tmp/biomappings.sssom.tsv:34168:6: E3: Redundant trailing whitespace in column 6 at line number 34168.
tmp/biomappings.sssom.tsv:37980:6: E3: Redundant trailing whitespace in column 6 at line number 37980.
tmp/biomappings.sssom.tsv:39409:6: E3: Redundant trailing whitespace in column 6 at line number 39409.
tmp/biomappings.sssom.tsv:39936:6: W1: Non ASCII character in column 6 at line number 39936.
tmp/biomappings.sssom.tsv:44879:6: W1: Non ASCII character in column 6 at line number 44879.
tmp/biomappings.sssom.tsv:45306:6: W1: Non ASCII character in column 6 at line number 45306.
tmp/biomappings.sssom.tsv:45307:6: W1: Non ASCII character in column 6 at line number 45307.
tmp/biomappings.sssom.tsv:45689:6: W1: Non ASCII character in column 6 at line number 45689.
tmp/biomappings.sssom.tsv:46979:6: E3: Redundant trailing whitespace in column 6 at line number 46979.
tmp/biomappings.sssom.tsv:47835:6: W1: Non ASCII character in column 6 at line number 47835.
tmp/biomappings.sssom.tsv:48631:6: W1: Non ASCII character in column 6 at line number 48631.
tmp/biomappings.sssom.tsv:50335:6: W1: Non ASCII character in column 6 at line number 50335.
tmp/biomappings.sssom.tsv:50686:6: W1: Non ASCII character in column 6 at line number 50686.
tmp/biomappings.sssom.tsv:50943:6: W1: Non ASCII character in column 6 at line number 50943.
tmp/biomappings.sssom.tsv:54443:6: W1: Non ASCII character in column 6 at line number 54443.
tmp/biomappings.sssom.tsv:57979:6: W1: Non ASCII character in column 6 at line number 57979.
tmp/biomappings.sssom.tsv:58500:6: W1: Non ASCII character in column 6 at line number 58500.
tmp/biomappings.sssom.tsv:65909:2: E3: Redundant trailing whitespace in column 2 at line number 65909.
tmp/biomappings.sssom.tsv:65909:6: E3: Redundant trailing whitespace in column 6 at line number 65909.
tmp/biomappings.sssom.tsv:65910:2: E3: Redundant trailing whitespace in column 2 at line number 65910.
tmp/biomappings.sssom.tsv:65910:6: E3: Redundant trailing whitespace in column 6 at line number 65910.
tmp/biomappings.sssom.tsv:65912:2: E3: Redundant trailing whitespace in column 2 at line number 65912.
tmp/biomappings.sssom.tsv:65912:6: E3: Redundant trailing whitespace in column 6 at line number 65912.
tmp/biomappings.sssom.tsv:65936:2: E3: Redundant trailing whitespace in column 2 at line number 65936.
tmp/biomappings.sssom.tsv:65936:6: E3: Redundant trailing whitespace in column 6 at line number 65936.

This is for example Gene regulatory network modelling somitogenesis which has an unnecessary space in the end:

tmp/biomappings.sssom.tsv:65912:2: E3: Redundant trailing whitespace in column 2 at line number 65912.