From 2f61810937678dc36f36187ed45a92bc166bb9bb Mon Sep 17 00:00:00 2001
From: Saul Pierotti <saul@ebi.ac.uk>
Date: Wed, 8 Nov 2023 14:11:42 +0000
Subject: [PATCH] output original matrices

---
 conf/modules.config | 7 +++++++
 1 file changed, 7 insertions(+)

diff --git a/conf/modules.config b/conf/modules.config
index 22b5978..35df7a2 100644
--- a/conf/modules.config
+++ b/conf/modules.config
@@ -72,6 +72,13 @@ process {
             mode: params.publish_dir_mode,
         ]
     }
+    withName:CHOLESKY {
+        publishDir = [
+            path: { "${params.outdir}/model_matrices/${meta.pheno}/${meta.chr}/" },
+            saveAs: { filename -> filename.equals('versions.yml') ? null : filename },
+            mode: params.publish_dir_mode,
+        ]
+    }
     withName:DECORRELATE {
         publishDir = [
             path: { "${params.outdir}/model_matrices/${meta.pheno}/${meta.chr}/" },