NAMESPACE

# Generated by roxygen2: do not edit by hand

export(calcHyperPPair)
export(calcJCPair)
export(calcMatchingProbsDouble)
export(calcMatchingProbsSingle)
export(calcOccDiff)
export(calcOccDiffPair)
export(calcOvPair)
export(calcPCC)
export(calcPCCPair)
export(calcrHyperPPair)
export(calcrJCPair)
export(calcrPCCPair)
export(cleanAnnotations)
export(cleanData)
export(doParCalc)
export(getProbMatchDfDouble)
export(getProbMatchFunSingle)
export(getProbMatchMatrixDouble)
export(getRuns)
export(mergeScoresAndAnnotations)
importFrom(KernSmooth,bkde2D)
importFrom(S4Vectors,Rle)
importFrom(S4Vectors,runValue)
importFrom(foreach,"%:%")
importFrom(foreach,"%dopar%")
importFrom(foreach,foreach)
importFrom(raster,focal)
importFrom(raster,raster)
importFrom(reshape2,acast)
importFrom(reshape2,melt)
importFrom(stats,approxfun)
importFrom(stats,as.dist)
importFrom(stats,cor)
importFrom(stats,fisher.test)