diff --git a/README.md b/README.md index 4af0398..5906f18 100644 --- a/README.md +++ b/README.md @@ -43,6 +43,14 @@ report [here](./test/reads.quaqc.txt). Note that quaqc can also save the final reads passing all filters to a new BAM file via the `-S/--keep` flag. (This will increase the runtime.) +## quaqcr + +For those who prefer to analyze their data with R, a companion package +[`quaqcr`](https://github.com/bjmt/quaqcr) is available. This package contains +functions for both executing quaqc from within R as well as analyzing all of +its outputs made available when outputting the results in JSON format. See +the README for a detailed tutorial. + ## Help Please open an [issue](https://github.com/bjmt/quaqc/issues) on GitHub. diff --git a/src/quaqc.h b/src/quaqc.h index 9e2a516..dd16ab0 100644 --- a/src/quaqc.h +++ b/src/quaqc.h @@ -25,7 +25,7 @@ #include #include "htslib/hts.h" -#define QUAQC_VERSION "0.1" +#define QUAQC_VERSION "1.0" #define QUAQC_YEAR "2024" // Command line defaults ------------------------------------------------------------