Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Which kind of NeuroML file to generate? #3

Open
borismarin opened this issue Apr 8, 2017 · 0 comments
Open

Which kind of NeuroML file to generate? #3

borismarin opened this issue Apr 8, 2017 · 0 comments

Comments

@borismarin
Copy link
Owner

The nml/lems generator at the kiss branch is currently aiming for a Component that can be directly insert into a 'regular' NeuroML cell (mainly for testing purposes) - i.e. an instance of something that extends baseIonChannel. That means its main task is exposing fcond (product of gating variables with respective exponents) to be used by components upstream to calculate the current (even though mod mechanisms calculate currents themselves). It also means we have to insert ad-hoc definitions (unrelated to whatever is in the original mod) to adapt the mechanism to this format (e.g., <Exposure name="fcond".../>) while disregarding current calculations.

Should we aim for more 'self contained' files (requiring new ComponentTypes like e.g. NEURONCell), which would read current directly from mechanisms, providing v and everything else the mod-based mechaninsms may need to READ?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant