From 441a8deafb5d759a912cb8f8e91690ffbed1188c Mon Sep 17 00:00:00 2001 From: Johannes Mueller Date: Thu, 10 Nov 2022 09:49:29 +0100 Subject: [PATCH] Disable pymc extension waiting for new bambi release In the current 0.9.1 release of bambi the numpy version is restricted to <1.22. As pypi does not allow us to pull the current git version of bambi as a dependency we need to disable the pymc extension for now. Signed-off-by: Johannes Mueller --- CHANGELOG.md | 5 ++++- setup.cfg | 8 ++++---- 2 files changed, 8 insertions(+), 5 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index d4dcd822..25414256 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -23,6 +23,9 @@ In this file noteworthy changes of new releases of pyLife are documented since ### Other changes -* Switch from pymc3 to pymc version 4 for Bayesian Wöhler analysis +* Switch from pymc3 to pymc version 4 for Bayesian Wöhler analysis. The + extension is not installable via pip as the current bambi release pulls a + numpy version that is incompatible with our demandas. If you need it, please + install bambi manually from their current git repo and then pymc via pip. * Lift numpy version restrictions diff --git a/setup.cfg b/setup.cfg index 3a45f1dd..eb395c66 100644 --- a/setup.cfg +++ b/setup.cfg @@ -93,11 +93,11 @@ analysis = tsfresh = tsfresh -pymc = - pymc - bambi @ git+https://github.com/bambinos/bambi.git#egg=bambi +# pymc = +# pymc +# bambi @ git+https://github.com/bambinos/bambi.git#egg=bambi -all = %(tsfresh)s %(pymc)s +all = %(tsfresh)s extras = jupyter