pyproject.toml

[build-system]
build-backend = "hatchling.build"
requires = ["hatchling"]

[project]
name = "cat-python"
version = "1.1.0"
description = "Cluster Alignment Tool (CAT)"
readme = "README.md"
requires-python = ">=3.10"
license = {file = "LICENSE"}
authors = [
    {name = "Alex Valentin Nielsen", email = "alexander.nielsen@nbi.ku.dk"},
    {name = "Martin Proks", email = "martin.proks@sund.ku.dk"},
    {name= "Ala Trusina", email = "trusina@nbi.ku.dk"}
]
maintainers = [
    {name = "Martin Proks", email = "martin.proks@sund.ku.dk"},
]
dependencies = [
    "anndata",
    "polars",
    "pyarrow",
    "plotly",
    "rich",
    "rich_argparse",
    "xlsxwriter"
]
classifiers = [
  "Development Status :: 4 - Beta",
  "Intended Audience :: Science/Research",
  "Topic :: Scientific/Engineering :: Artificial Intelligence",
  "Topic :: Scientific/Engineering :: Bio-Informatics",
  "License :: OSI Approved :: MIT License",
  "Programming Language :: Python :: 3.10"
]

[project.scripts]
catcli = "cat.cli:main"

[project.optional-dependencies]
dev = ["pre-commit"]
doc = [
  "setuptools",
  "sphinx>=4.0",
  "myst-nb>=1.1",
  "sphinx-book-theme>=1",
  "sphinxcontrib-bibtex>=1"
]

[project.urls]
Documentation = "https://brickmanlabcat.readthedocs.io/"
Source = "https://github.com/brickmanlab/cat-python"
Homepage = "https://github.com/brickmanlab/cat-python"

[tool.ruff]
lint.ignore = ["E731"]

[tool.hatch.build.targets.wheel]
packages = ["src/cat"]