diff --git a/LICENSE_BSD3.md b/LICENSE_BSD3.md new file mode 100644 index 0000000..5844197 --- /dev/null +++ b/LICENSE_BSD3.md @@ -0,0 +1,29 @@ +# BSD 3-Clause License + +_Copyright (c) 2020, The Broad Institute of MIT and Harvard_ +_All rights reserved._ + +Redistribution and use in source and binary forms, with or without +modification, are permitted provided that the following conditions are met: + +* Redistributions of source code must retain the above copyright notice, this + list of conditions and the following disclaimer. + +* Redistributions in binary form must reproduce the above copyright notice, + this list of conditions and the following disclaimer in the documentation + and/or other materials provided with the distribution. + +* Neither the name of the copyright holder nor the names of its + contributors may be used to endorse or promote products derived from + this software without specific prior written permission. + +THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" +AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE +IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE +DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE +FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL +DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR +SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER +CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, +OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE +OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. diff --git a/LICENSE_CC0.md b/LICENSE_CC0.md new file mode 100644 index 0000000..7121e58 --- /dev/null +++ b/LICENSE_CC0.md @@ -0,0 +1,121 @@ +# Creative Commons Legal Code + +## CC0 1.0 Universal + + CREATIVE COMMONS CORPORATION IS NOT A LAW FIRM AND DOES NOT PROVIDE + LEGAL SERVICES. DISTRIBUTION OF THIS DOCUMENT DOES NOT CREATE AN + ATTORNEY-CLIENT RELATIONSHIP. CREATIVE COMMONS PROVIDES THIS + INFORMATION ON AN "AS-IS" BASIS. CREATIVE COMMONS MAKES NO WARRANTIES + REGARDING THE USE OF THIS DOCUMENT OR THE INFORMATION OR WORKS + PROVIDED HEREUNDER, AND DISCLAIMS LIABILITY FOR DAMAGES RESULTING FROM + THE USE OF THIS DOCUMENT OR THE INFORMATION OR WORKS PROVIDED + HEREUNDER. + +### Statement of Purpose + +The laws of most jurisdictions throughout the world automatically confer +exclusive Copyright and Related Rights (defined below) upon the creator +and subsequent owner(s) (each and all, an "owner") of an original work of +authorship and/or a database (each, a "Work"). + +Certain owners wish to permanently relinquish those rights to a Work for +the purpose of contributing to a commons of creative, cultural and +scientific works ("Commons") that the public can reliably and without fear +of later claims of infringement build upon, modify, incorporate in other +works, reuse and redistribute as freely as possible in any form whatsoever +and for any purposes, including without limitation commercial purposes. +These owners may contribute to the Commons to promote the ideal of a free +culture and the further production of creative, cultural and scientific +works, or to gain reputation or greater distribution for their Work in +part through the use and efforts of others. + +For these and/or other purposes and motivations, and without any +expectation of additional consideration or compensation, the person +associating CC0 with a Work (the "Affirmer"), to the extent that he or she +is an owner of Copyright and Related Rights in the Work, voluntarily +elects to apply CC0 to the Work and publicly distribute the Work under its +terms, with knowledge of his or her Copyright and Related Rights in the +Work and the meaning and intended legal effect of CC0 on those rights. + +1. 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Copyright and Related Rights include, but are not +limited to, the following: + + i. the right to reproduce, adapt, distribute, perform, display, + communicate, and translate a Work; + ii. moral rights retained by the original author(s) and/or performer(s); +iii. publicity and privacy rights pertaining to a person's image or + likeness depicted in a Work; + iv. rights protecting against unfair competition in regards to a Work, + subject to the limitations in paragraph 4(a), below; + v. rights protecting the extraction, dissemination, use and reuse of data + in a Work; + vi. database rights (such as those arising under Directive 96/9/EC of the + European Parliament and of the Council of 11 March 1996 on the legal + protection of databases, and under any national implementation + thereof, including any amended or successor version of such + directive); and +vii. other similar, equivalent or corresponding rights throughout the + world based on applicable law or treaty, and any national + implementations thereof. + +2. Waiver. To the greatest extent permitted by, but not in contravention +of, applicable law, Affirmer hereby overtly, fully, permanently, +irrevocably and unconditionally waives, abandons, and surrenders all of +Affirmer's Copyright and Related Rights and associated claims and causes +of action, whether now known or unknown (including existing as well as +future claims and causes of action), in the Work (i) in all territories +worldwide, (ii) for the maximum duration provided by applicable law or +treaty (including future time extensions), (iii) in any current or future +medium and for any number of copies, and (iv) for any purpose whatsoever, +including without limitation commercial, advertising or promotional +purposes (the "Waiver"). 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Should any part of the License for any +reason be judged legally invalid or ineffective under applicable law, such +partial invalidity or ineffectiveness shall not invalidate the remainder +of the License, and in such case Affirmer hereby affirms that he or she +will not (i) exercise any of his or her remaining Copyright and Related +Rights in the Work or (ii) assert any associated claims and causes of +action with respect to the Work, in either case contrary to Affirmer's +express Statement of Purpose. + +4. Limitations and Disclaimers. + + a. No trademark or patent rights held by Affirmer are waived, abandoned, + surrendered, licensed or otherwise affected by this document. + b. Affirmer offers the Work as-is and makes no representations or + warranties of any kind concerning the Work, express, implied, + statutory or otherwise, including without limitation warranties of + title, merchantability, fitness for a particular purpose, non + infringement, or the absence of latent or other defects, accuracy, or + the present or absence of errors, whether or not discoverable, all to + the greatest extent permissible under applicable law. + c. Affirmer disclaims responsibility for clearing rights of other persons + that may apply to the Work or any use thereof, including without + limitation any person's Copyright and Related Rights in the Work. + Further, Affirmer disclaims responsibility for obtaining any necessary + consents, permissions or other rights required for any use of the + Work. + d. Affirmer understands and acknowledges that Creative Commons is not a + party to this document and has no duty or obligation with respect to + this CC0 or use of the Work. diff --git a/README.md b/README.md index 010fa1e..6977408 100644 --- a/README.md +++ b/README.md @@ -1,25 +1,30 @@ -# Processed Data for the LINCS Cell Painting Project +# LINCS Cell Painting profile data repository -The repository stores data and data processing scripts for **a subset** of the [Broad Drug Repurposing Hub](https://clue.io/repurposing#home) collection of compounds. +The Library of Integrated Network-Based Cellular Signatures (LINCS) Project aims to create publicly available resources to characterize how cells respond to perturbation. +This repository stores Cell Painting readouts and associated data-processing pipelines for the LINCS Cell Painting dataset. In this project, the [Connectivity Map](https://clue.io/team) team perturbed A549 cells with 1,571 compounds across 6 doses in 5 technical replicates. +The data represent **a subset** of the [Broad Drug Repurposing Hub](https://clue.io/repurposing#home) collection of compounds. + We refer to this dataset as `LINCS Pilot 1`. +We also include data for the second batch of LINCS Cell Painting data, which we refer to as `LKCP`. For a specific list of compounds tested, see [`metadata`](https://github.com/broadinstitute/lincs-cell-painting/tree/master/metadata). -Information about the compounds can be interactively explored in the [CLUE Repurposing app](https://clue.io/repurposing-app). +You can interactively explore information about the compounds in the [CLUE Repurposing app](https://clue.io/repurposing-app). + The [Morphology Connectivity Hub](https://clue.io/morphology) is the primary source of this dataset. -## Image-Based Profiling +## Image-based profiling -We apply a unified, image-based profiling pipeline to all 136 384-well plates from `LINCS Pilot 1` . +We apply a unified, image-based profiling pipeline to all 136 384-well plates from `LINCS Pilot 1`, and all 135 384-well plates from `LKCP`. We use [pycytominer](https://github.com/cytomining/pycytominer) as the primary tool for image-based profiling. -The profiles are processed and stored in the [profiles/](profiles/) directory. +We process and store profiles in the [profiles/](profiles/) directory. See [`profiles/README.md`](profiles/README.md) for more details and for instructions on how to reproduce the pipeline. For more details about image-based profiling in general, please refer to [Caicedo et al. 2017](https://doi.org/10.1038/nmeth.4397). -## Computational Environment +## Computational environment We use [conda](https://docs.conda.io/en/latest/) to manage the computational environment. @@ -38,3 +43,8 @@ conda activate lincs ``` Also note that when contributing to the repository, make sure to add any new package in the `environment.yml` file. + +## License + +We use a dual license in this repository. +We license the source code as [BSD 3-Clause](LICENSE_BSD3.md), and license the data, results, and figures as [CC0 1.0](LICENSE_CC0.md). diff --git a/metadata/platemaps/2017_12_05_Batch2/barcode_platemap.csv b/metadata/platemaps/2017_12_05_Batch2/barcode_platemap.csv new file mode 100755 index 0000000..dc3b405 --- /dev/null +++ b/metadata/platemaps/2017_12_05_Batch2/barcode_platemap.csv @@ -0,0 +1,136 @@ +Assay_Plate_Barcode,Plate_Map_Name +BR00092655,LKCP001_A549_6H +BR00092656,LKCP001_A549_6H +BR00092657,LKCP001_A549_6H +BR00092658,LKCP001_A549_6H +BR00092659,LKCP001_A549_6H +BR00092660,LKCP002_A549_6H +BR00092661,LKCP002_A549_6H +BR00092662,LKCP002_A549_6H +BR00092663,LKCP002_A549_6H +BR00092664,LKCP002_A549_6H +BR00092665,ASG003_A549_6H +BR00092666,ASG003_A549_6H +BR00092667,ASG003_A549_6H +BR00092668,ASG003_A549_6H +BR00092669,ASG003_A549_6H +BR00092670,LKCP001_MCF7_6H +BR00092671,LKCP001_MCF7_6H +BR00092672,LKCP001_MCF7_6H +BR00092673,LKCP001_MCF7_6H +BR00092674,LKCP001_MCF7_6H +BR00092675,LKCP002_MCF7_6H +BR00092676,LKCP002_MCF7_6H +BR00092677,LKCP002_MCF7_6H +BR00092678,LKCP002_MCF7_6H +BR00092679,LKCP002_MCF7_6H +BR00092680,ASG003_MCF7_6H +BR00092681,ASG003_MCF7_6H +BR00092682,ASG003_MCF7_6H +BR00092683,ASG003_MCF7_6H +BR00092684,ASG003_MCF7_6H +BR00092685,LKCP001_U2OS_6H +BR00092686,LKCP001_U2OS_6H +BR00092687,LKCP001_U2OS_6H +BR00092688,LKCP001_U2OS_6H +BR00092689,LKCP001_U2OS_6H +BR00092690,LKCP002_U2OS_6H +BR00092691,LKCP002_U2OS_6H +BR00092692,LKCP002_U2OS_6H +BR00092693,LKCP002_U2OS_6H +BR00092694,LKCP002_U2OS_6H +BR00092695,ASG003_U2OS_6H +BR00092696,ASG003_U2OS_6H +BR00092697,ASG003_U2OS_6H +BR00092698,ASG003_U2OS_6H +BR00092699,ASG003_U2OS_6H +BR00092700,LKCP001_A549_24H +BR00092701,LKCP001_A549_24H +BR00092702,LKCP001_A549_24H +BR00092703,LKCP001_A549_24H +BR00092704,LKCP001_A549_24H +BR00092705,LKCP002_A549_24H +BR00092706,LKCP002_A549_24H +BR00092707,LKCP002_A549_24H +BR00092708,LKCP002_A549_24H +BR00092709,LKCP002_A549_24H +BR00092710,ASG003_A549_24H +BR00092711,ASG003_A549_24H +BR00092712,ASG003_A549_24H +BR00092713,ASG003_A549_24H +BR00092714,ASG003_A549_24H +BR00092715,LKCP001_MCF7_24H +BR00092716,LKCP001_MCF7_24H +BR00092717,LKCP001_MCF7_24H +BR00092718,LKCP001_MCF7_24H +BR00092719,LKCP001_MCF7_24H +BR00092720,LKCP002_MCF7_24H +BR00092721,LKCP002_MCF7_24H +BR00092722,LKCP002_MCF7_24H +BR00092723,LKCP002_MCF7_24H +BR00092724,LKCP002_MCF7_24H +BR00092725,ASG003_MCF7_24H +BR00092726,ASG003_MCF7_24H +BR00092727,ASG003_MCF7_24H +BR00092728,ASG003_MCF7_24H +BR00092729,ASG003_MCF7_24H +BR00092730,LKCP001_U2OS_24H +BR00092731,LKCP001_U2OS_24H +BR00092732,LKCP001_U2OS_24H +BR00092733,LKCP001_U2OS_24H +BR00092734,LKCP001_U2OS_24H +BR00092735,LKCP002_U2OS_24H +BR00092736,LKCP002_U2OS_24H +BR00092737,LKCP002_U2OS_24H +BR00092738,LKCP002_U2OS_24H +BR00092739,LKCP002_U2OS_24H +BR00092740,ASG003_U2OS_24H +BR00092741,ASG003_U2OS_24H +BR00092742,ASG003_U2OS_24H +BR00092743,ASG003_U2OS_24H +BR00092744,ASG003_U2OS_24H +BR00092745,LKCP001_A549_48H +BR00092746,LKCP001_A549_48H +BR00092747,LKCP001_A549_48H +BR00092748,LKCP001_A549_48H +BR00092749,LKCP001_A549_48H +BR00092750,LKCP002_A549_48H +BR00092751,LKCP002_A549_48H +BR00092752,LKCP002_A549_48H +BR00092753,LKCP002_A549_48H +BR00092754,LKCP002_A549_48H +BR00092755,ASG003_A549_48H +BR00092756,ASG003_A549_48H +BR00092757,ASG003_A549_48H +BR00092758,ASG003_A549_48H +BR00092759,ASG003_A549_48H +BR00092760,LKCP001_MCF7_48H +BR00092761,LKCP001_MCF7_48H +BR00092762,LKCP001_MCF7_48H +BR00092763,LKCP001_MCF7_48H +BR00092764,LKCP001_MCF7_48H +BR00092765,LKCP002_MCF7_48H +BR00092766,LKCP002_MCF7_48H +BR00092767,LKCP002_MCF7_48H +BR00092768,LKCP002_MCF7_48H +BR00092769,LKCP002_MCF7_48H +BR00092770,ASG003_MCF7_48H +BR00092771,ASG003_MCF7_48H +BR00092772,ASG003_MCF7_48H +BR00092773,ASG003_MCF7_48H +BR00092774,ASG003_MCF7_48H +BR00092775,LKCP001_U2OS_48H +BR00092776,LKCP001_U2OS_48H +BR00092777,LKCP001_U2OS_48H +BR00092778,LKCP001_U2OS_48H +BR00092779,LKCP001_U2OS_48H +BR00092780,LKCP002_U2OS_48H +BR00092781,LKCP002_U2OS_48H +BR00092782,LKCP002_U2OS_48H +BR00092783,LKCP002_U2OS_48H +BR00092784,LKCP002_U2OS_48H +BR00092785,ASG003_U2OS_48H +BR00092786,ASG003_U2OS_48H +BR00092787,ASG003_U2OS_48H +BR00092788,ASG003_U2OS_48H +BR00092789,ASG003_U2OS_48H \ No newline at end of file diff --git a/metadata/platemaps/2017_12_05_Batch2/cell_painting_dataset_cmap_annotations_moa.csv b/metadata/platemaps/2017_12_05_Batch2/cell_painting_dataset_cmap_annotations_moa.csv new file mode 100755 index 0000000..9b20385 --- /dev/null +++ b/metadata/platemaps/2017_12_05_Batch2/cell_painting_dataset_cmap_annotations_moa.csv @@ -0,0 +1,623 @@ +pert_id,pert_iname,moa +BRD-A00546892,biperiden,Acetylcholine receptor antagonist +BRD-A01787639,naftopidil,Adrenergic receptor antagonist +BRD-A02006392,nitrendipine,Calcium channel blocker +BRD-A02367930,ethinyl-estradiol,DNA directed DNA polymerase stimulant +BRD-A02710418,meptazinol,Opioid receptor agonist +BRD-A02990301,lofexidine,Adrenergic receptor agonist +BRD-A03216249,mepivacaine,Potassium channel blocker +BRD-A04352665,maraviroc,CC chemokine receptor antagonist +BRD-A04553218,chlorphenamine,Histamine receptor antagonist +BRD-A05186015,bupropion,Dopamine uptake inhibitor +BRD-A07395371,esmolol,Adrenergic receptor antagonist +BRD-A07440155,labetalol,Adrenergic receptor antagonist +BRD-A08187463,racecadotril,Enkephalinase inhibitor +BRD-A09472452,flecainide,Sodium channel blocker +BRD-A09533288,verapamil,Calcium channel blocker +BRD-A10070317,propranolol,Adrenergic receptor antagonist +BRD-A10903566,imiloxan,Adrenergic receptor antagonist +BRD-A10977446,carvedilol,Adrenergic receptor antagonist +BRD-A11990600,lorazepam,Benzodiazepine receptor agonist +BRD-A13084692,troglitazone,Insulin sensitizer +BRD-A13133631,fluorometholone,Glucocorticoid receptor agonist +BRD-A13188892,doxazosin,Adrenergic receptor antagonist +BRD-A14798026,mestranol,Estrogen receptor agonist +BRD-A14966924,alaproclate,Serotonin receptor antagonist +BRD-A15435692,BMY-14802,Sigma receptor antagonist +BRD-A16665823,butoconazole,Bacterial cell wall synthesis inhibitor +BRD-A17411484,carprofen,Cyclooxygenase inhibitor +BRD-A17655518,ibuprofen,Cyclooxygenase inhibitor +BRD-A17883755,lenalidomide,Antineoplastic +BRD-A18043272,phensuximide,Succinimide antiepileptic +BRD-A18620900,estriol,Estrogen receptor agonist +BRD-A18917088,estradiol,Contraceptive agent +BRD-A19195498,trimipramine,Norepinephrine reuptake inhibitor +BRD-A19633847,perhexiline,Carnitine palmitoyltransferase inhibitor +BRD-A19661776,mianserin,Serotonin receptor antagonist +BRD-A19736161,ondansetron,Serotonin receptor antagonist +BRD-A20126139,medrysone,Glucocorticoid receptor agonist +BRD-A20131130,,Adenylyl cyclase inhibitor +BRD-A20239487,atenolol-(+/-),Adrenergic receptor antagonist +BRD-A21858158,praziquantel,Anthelmintic +BRD-A22032524,amlodipine,Calcium channel blocker +BRD-A22380646,pantoprazole,ATPase inhibitor +BRD-A22769835,homochlorcyclizine,Antihistamine +BRD-A24191444,ifenprodil,Adrenergic receptor antagonist +BRD-A24228527,ofloxacin,Bacterial DNA gyrase inhibitor +BRD-A24514565,warfarin,Vitamin K antagonist +BRD-A25234499,aminoglutethimide,Glucocorticoid receptor antagonist +BRD-A26032986,zaldaride,Calmodulin antagonist +BRD-A26095496,clobetasol-propionate,Glucocorticoid receptor agonist +BRD-A26334849,propafenone,Antiarrhythmic +BRD-A26384407,chlorthalidone,Carbonic anhydrase inhibitor +BRD-A26711594,nicardipine,Calcium channel blocker +BRD-A28746609,paclitaxel,Tubulin inhibitor +BRD-A29260609,acebutolol,Adrenergic receptor antagonist +BRD-A29289453,PCA-4248,Platelet activating factor receptor antagonist +BRD-A29322418,potassium-canrenoate,Mineralocorticoid receptor antagonist +BRD-A29485665,bicalutamide,Androgen receptor antagonist +BRD-A29731977,17-hydroxyprogesterone-caproate,Progesterone receptor agonist +BRD-A29734509,disopyramide,Sodium channel blocker +BRD-A30815329,felodipine,Calcium channel blocker +BRD-A31159102,fluoxetine,Selective serotonin reuptake inhibitor (SSRI) +BRD-A31521121,methocarbamol,Muscle relaxant +BRD-A33168282,sotalol,Adrenergic receptor antagonist +BRD-A33447119,oxfendazole,Anthelmintic +BRD-A33711280,metixene,Acetylcholine receptor antagonist +BRD-A34255068,rolipram,Interleukin receptor antagonist +BRD-A36010170,amcinonide,Glucocorticoid receptor agonist +BRD-A39390670,rabeprazole,ATPase inhibitor +BRD-A39415247,norethisterone,Progesterone receptor agonist +BRD-A40639672,ketorolac,Cyclooxygenase inhibitor +BRD-A41451487,PK-11195,Benzodiazepine receptor antagonist +BRD-A42759514,ornidazole,Antiprotozoal +BRD-A43082555,loxoprofen,Cyclooxygenase inhibitor +BRD-A43331270,,Adrenergic receptor antagonist +BRD-A43882281,pinacidil,ATP channel activator +BRD-A44090213,indoprofen,Cyclooxygenase inhibitor +BRD-A44448661,pentobarbital,Barbiturate antiepileptic +BRD-A45889380,mepacrine,Cytokine production inhibitor +BRD-A46179541,doxapram,Potassium channel blocker +BRD-A47598013,citalopram,Serotonin reuptake inhibitor +BRD-A48237631,mitomycin-c,DNA alkylating agent +BRD-A48430263,pioglitazone,Insulin sensitizer +BRD-A48570745,ivermectin,GABA receptor agonist +BRD-A49160188,donepezil,Acetylcholinesterase inhibitor +BRD-A49765801,fludroxycortide,Glucocorticoid receptor agonist +BRD-A50311610,meclizine,CAR agonist +BRD-A50675702,fipronil,Chloride channel blocker +BRD-A50684349,fenoldopam,Dopamine receptor agonist +BRD-A50764878,MDL-73005EF,Serotonin receptor antagonist +BRD-A51382177,fosinopril,ACE inhibitor +BRD-A51714012,venlafaxine,Adrenergic inhibitor +BRD-A52660433,tetrindole,Monoamine oxidase inhibitor +BRD-A53576514,orphenadrine,Acetylcholine receptor antagonist +BRD-A54880345,etomidate,GABA receptor modulator +BRD-A55272860,sulpiride,Dopamine receptor antagonist +BRD-A55393291,testosterone,Androgen receptor agonist +BRD-A55913614,primaquine,Antimalarial +BRD-A55962179,omeprazole,ATPase inhibitor +BRD-A56359832,zileuton,Leukotriene inhibitor +BRD-A57382968,piroxicam,Cyclooxygenase inhibitor +BRD-A58048407,nimodipine,Calcium channel blocker +BRD-A58280226,,Rho associated kinase inhibitor +BRD-A58564983,selamectin,Nematocide +BRD-A58955223,sulforaphane,Antineoplastic +BRD-A59174698,ritodrine,Adrenergic receptor agonist +BRD-A61793559,metolazone,Carbonic anhydrase inhibitor +BRD-A62025033,,MTOR inhibitor +BRD-A62035778,scopolamine,Acetylcholine receptor antagonist +BRD-A62071884,siguazodan,Phosphodiesterase inhibitor +BRD-A62525898,prednisone,Glucocorticoid receptor agonist +BRD-A64977602,mirtazapine,Adrenergic receptor antagonist +BRD-A65013509,oxybutynin,Acetylcholine receptor antagonist +BRD-A65280694,molindone,Dopamine receptor antagonist +BRD-A67373739,,AMPK activator +BRD-A67862938,naftidrofuryl,Adrenergic receptor antagonist +BRD-A68009927,daunorubicin,RNA synthesis inhibitor +BRD-A68281735,REV-5901,Leukotriene receptor antagonist +BRD-A68888262,azelastine,Histamine receptor antagonist +BRD-A69636825,diltiazem,Calcium channel blocker +BRD-A69815203,cyclosporin-a,Calcineurin inhibitor +BRD-A69951442,,Corticosteroid agonist +BRD-A70083328,secnidazole,Acetylcholinesterase inhibitor +BRD-A72066420,mifobate,PPAR receptor antagonist +BRD-A72711497,lasalocid,Bacterial permeability inducer +BRD-A73368467,fexofenadine,Histamine receptor antagonist +BRD-A73741725,exemestane,Aromatase inhibitor +BRD-A74667430,etodolac,Cyclooxygenase inhibitor +BRD-A74980173,gatifloxacin,Bacterial DNA gyrase inhibitor +BRD-A75172220,hydrocortisone,Corticosteroid agonist +BRD-A75479906,rimantadine,Antiviral +BRD-A77216878,,Farnesyltransferase inhibitor +BRD-A78877355,nefopam,Cyclooxygenase inhibitor +BRD-A79768653,sirolimus,MTOR inhibitor +BRD-A79981887,midodrine,Adrenergic receptor agonist +BRD-A80017228,bendroflumethiazide,Sodium/potassium/chloride transporter inhibitor +BRD-A80151636,bromocriptine,Dopamine receptor agonist +BRD-A81233518,glycopyrrolate,Acetylcholine receptor antagonist +BRD-A83081521,finasteride,5-alpha reductase inhibitor +BRD-A84045418,,Calpain inhibitor +BRD-A84174393,meloxicam,Cyclooxygenase inhibitor +BRD-A84481105,thioridazine,Dopamine receptor antagonist +BRD-A87479750,tenidap,Cyclooxygenase inhibitor +BRD-A89175223,bisoprolol,Adrenergic receptor antagonist +BRD-A89585551,mefloquine,Adenosine receptor antagonist +BRD-A90799790,isradipine,Calcium channel blocker +BRD-A91699651,chloroquine,Antimalarial +BRD-A92537424,danazol,Estrogen receptor antagonist +BRD-A92630576,trimebutine,Opioid receptor agonist +BRD-A92826379,lupanine,Sodium channel blocker +BRD-A93000692,ciglitazone,PPAR receptor agonist +BRD-A93255169,thalidomide,TNF production inhibitor +BRD-A93424738,dexamethasone-acetate,Corticosteroid agonist +BRD-A94543220,bifonazole,Sterol demethylase inhibitor +BRD-A94756469,digoxin,ATPase inhibitor +BRD-A95696066,nisoxetine,Norepinephrine reuptake inhibitor +BRD-A95869247,indapamide,Thiazide diuretic +BRD-A95939040,sertaconazole,Sterol demethylase inhibitor +BRD-A96456596,FPL-55712,Leukotriene receptor antagonist +BRD-A97104540,fenoterol,Adrenergic receptor agonist +BRD-A97437073,rosiglitazone,Insulin sensitizer +BRD-A97479839,piperidolate,Acetylcholine receptor antagonist +BRD-A97674275,ranolazine,Sodium channel blocker +BRD-A97701745,pindolol,Adrenergic receptor antagonist +BRD-A97739905,ketoprofen,Cyclooxygenase inhibitor +BRD-A98702003,carbenoxolone,11-beta-HSD1 inhibitor +BRD-K00603606,ticlopidine,Purinergic receptor antagonist +BRD-K00610438,altanserin,Serotonin receptor antagonist +BRD-K00662280,CL-218872,GABA receptor agonist +BRD-K00673382,famotidine,Histamine receptor antagonist +BRD-K01192156,,Protein tyrosine kinase inhibitor +BRD-K01292756,pimozide,Dopamine receptor antagonist +BRD-K01638814,rilmenidine,Adrenergic receptor agonist +BRD-K01663662,diphenidol,Acetylcholine receptor agonist +BRD-K01815685,indole-3-carbinol,Aryl hydrocarbon receptor agonist +BRD-K02113016,olaparib,PARP inhibitor +BRD-K02123250,JNJ-38877605,Tyrosine kinase inhibitor +BRD-K02265150,amoxapine,Norepinephrine reuptake inhibitor +BRD-K02404261,caffeine,Adenosine receptor antagonist +BRD-K02637541,celecoxib,Cyclooxygenase inhibitor +BRD-K02867583,minaprine,Serotonin reuptake inhibitor +BRD-K02950022,BMS-299897,Gamma secretase inhibitor +BRD-K02992638,lamivudine,Nucleoside reverse transcriptase inhibitor +BRD-K03384561,roquinimex,Angiogenesis inhibitor +BRD-K03816923,,MAP kinase inhibitor +BRD-K03842655,,Potassium channel blocker +BRD-K04111260,raclopride,Dopamine receptor antagonist +BRD-K04185004,oxybuprocaine,Local anesthetic +BRD-K04887706,,AKT inhibitor +BRD-K05104363,PD-184352,MEK inhibitor +BRD-K05395900,nicotine,Acetylcholine receptor agonist +BRD-K05658747,raltegravir,HIV integrase inhibitor +BRD-K05673000,dicloxacillin,Bacterial cell wall synthesis inhibitor +BRD-K05804044,AZ-628,RAF inhibitor +BRD-K05977355,fluconazole,Sterol demethylase inhibitor +BRD-K06335600,tizanidine,Adrenergic receptor agonist +BRD-K06388322,pramipexole,Dopamine receptor agonist +BRD-K06878038,deferiprone,Chelating agent +BRD-K06902185,minoxidil,KATP activator +BRD-K07220430,cinnarazine,Calcium channel blocker +BRD-K07237224,moclobemide,Monoamine oxidase inhibitor +BRD-K07572174,curcumin,Cyclooxygenase inhibitor +BRD-K07691486,roscovitine,CDK inhibitor +BRD-K07881437,danusertib,Aurora kinase inhibitor +BRD-K08206212,entecavir,DNA replication inhibitor +BRD-K08252256,diclofenac,Cyclooxygenase inhibitor +BRD-K08547377,irinotecan,Topoisomerase inhibitor +BRD-K08703257,3-amino-benzamide,PARP inhibitor +BRD-K08924299,palonosetron,Serotonin receptor antagonist +BRD-K09132007,D-4476,TGF beta receptor inhibitor +BRD-K09255212,clioquinol,Chelating agent +BRD-K09397065,SR-57227A,Serotonin receptor agonist +BRD-K09471561,levofloxacin,Bacterial DNA gyrase inhibitor +BRD-K09549677,mibefradil,T-type calcium channel blocker +BRD-K09602097,forskolin,Adenylyl cyclase activator +BRD-K10670311,sulfasalazine,Antirheumatic +BRD-K10843433,phenylbutazone,Cyclooxygenase inhibitor +BRD-K10852020,tolcapone,Catechol O methyltransferase inhibitor +BRD-K10961822,latanoprost,Prostanoid receptor agonist +BRD-K11129031,gemfibrozil,Lipoprotein lipase activator +BRD-K11399644,phenformin,AMPK activator +BRD-K11433652,aspirin,Cyclooxygenase inhibitor +BRD-K11717138,benzbromarone,Chloride channel blocker +BRD-K12184916,NVP-BEZ235,MTOR inhibitor +BRD-K12219985,glipizide,Sulfonylurea +BRD-K12867552,PCI-24781,HDAC inhibitor +BRD-K12932420,YM-976,Phosphodiesterase inhibitor +BRD-K12994359,valdecoxib,Cyclooxygenase inhibitor +BRD-K13356952,methazolamide,Carbonic anhydrase inhibitor +BRD-K13390322,AT-7519,CDK inhibitor +BRD-K13646352,midostaurin,FLT3 inhibitor +BRD-K13819402,desoxypeganine,Acetylcholinesterase inhibitor +BRD-K13926615,vardenafil,Phosphodiesterase inhibitor +BRD-K14993104,bemegride,Chemoreceptor agonist +BRD-K15108141,gemcitabine,Ribonucleotide reductase inhibitor +BRD-K15409150,penfluridol,T-type calcium channel blocker +BRD-K15502390,nevirapine,Reverse transcriptase inhibitor +BRD-K15567136,papaverine,Phosphodiesterase inhibitor +BRD-K15916496,clotrimazole,Cytochrome P450 inhibitor +BRD-K15933101,ropinirole,Dopamine receptor agonist +BRD-K16195444,oxymetazoline,Adrenergic receptor agonist +BRD-K16444452,ibudilast,Leukotriene receptor antagonist +BRD-K16508793,diazepam,Benzodiazepine receptor agonist +BRD-K16542329,zaprinast,Phosphodiesterase inhibitor +BRD-K17075857,chloroxine,Opioid receptor antagonist +BRD-K17561142,amiodarone,Potassium channel blocker +BRD-K17705806,JTC-801,Opioid receptor antagonist +BRD-K17743125,belinostat,HDAC inhibitor +BRD-K18194590,mephentermine,Adrenergic receptor agonist +BRD-K18678457,ZD-7288,HCN channel blocker +BRD-K18779551,bifemelane,Acetylcholine release stimulant +BRD-K18895904,olanzapine,Dopamine receptor antagonist +BRD-K19111024,clofibric-acid,PPAR receptor agonist +BRD-K19284129,salvinorin-a,Opioid receptor agonist +BRD-K19352500,prochlorperazine,Dopamine receptor antagonist +BRD-K19416115,sitagliptin,Dipeptidyl peptidase inhibitor +BRD-K19462402,buflomedil,Adrenergic receptor antagonist +BRD-K19540840,saracatinib,SRC inhibitor +BRD-K19687926,lapatinib,EGFR inhibitor +BRD-K20141153,atomoxetine,Norepinephrine transporter inhibitor +BRD-K20285085,fostamatinib,SYK inhibitor +BRD-K20920669,cromoglicic-acid,Immunosuppressant +BRD-K21283037,riluzole,Glutamate inhibitor +BRD-K21450440,benzthiazide,Carbonic anhydrase inhibitor +BRD-K21548250,moracizine,Sodium channel blocker +BRD-K21680192,mitoxantrone,Topoisomerase inhibitor +BRD-K22031190,diflunisal,Prostanoid receptor antagonist +BRD-K22134346,simvastatin,HMGCR inhibitor +BRD-K22662435,ganciclovir,DNA polymerase inhibitor +BRD-K23204545,busulfan,DNA inhibitor +BRD-K23875128,,Rho associated kinase inhibitor +BRD-K23984367,sorafenib,FLT3 inhibitor +BRD-K24576554,AT-9283,ABL inhibitor +BRD-K25394294,oxaprozin,Cyclooxygenase inhibitor +BRD-K25433859,maprotiline,Norepinephrine reuptake inhibitor +BRD-K25650355,physostigmine,Acetylcholinesterase inhibitor +BRD-K26619122,thiocolchicoside,GABA receptor antagonist +BRD-K26657438,imiquimod,Interferon inducer +BRD-K27184429,levocetirizine,Histamine receptor antagonist +BRD-K28115081,apafant,Platelet activating factor receptor antagonist +BRD-K28143534,cyproheptadine,Histamine receptor antagonist +BRD-K28183345,proguanil,Dihydrofolate reductase inhibitor +BRD-K28307902,flutamide,Androgen receptor antagonist +BRD-K28428262,brivanib,FGFR inhibitor +BRD-K28470988,L-690330,Inositol monophosphatase inhibitor +BRD-K28542495,benzydamine,Membrane integrity inhibitor +BRD-K28667793,pyrazinamide,Fatty acid synthase inhibitor +BRD-K28912512,nicotinamide,Protein synthesis stimulant +BRD-K29359156,ebselen,Cyclooxygenase inhibitor +BRD-K29458283,chlorambucil,DNA inhibitor +BRD-K29530284,amlexanox,Histamine receptor modulator +BRD-K29582115,ziprasidone,Dopamine receptor antagonist +BRD-K29653726,topiramate,Carbonic anhydrase inhibitor +BRD-K29673530,hypericin,Tyrosine kinase inhibitor +BRD-K29950728,clomifene,Estrogen receptor antagonist +BRD-K30480208,torasemide,Electrolyte reabsorption inhibitor +BRD-K30563334,rifabutin,Protein synthesis inhibitor +BRD-K31342827,GF109203X,CDK inhibitor +BRD-K31627533,rimexolone,Glucocorticoid receptor agonist +BRD-K32107296,temozolomide,DNA alkylating agent +BRD-K32164935,tolazamide,ATP channel blocker +BRD-K32247306,primidone,GABA receptor antagonist +BRD-K32318651,acyclovir,DNA polymerase inhibitor +BRD-K32405725,etomoxir,Carnitine palmitoyltransferase inhibitor +BRD-K32501161,vanoxerine,Dopamine uptake inhibitor +BRD-K32744045,disulfiram,Aldehyde dehydrogenase inhibitor +BRD-K32821942,azathioprine,Dehydrogenase inhibitor +BRD-K32977963,eugenol,Androgen receptor antagonist +BRD-K33106058,cytarabine,Ribonucleotide reductase inhibitor +BRD-K33211335,dextromethorphan,Glutamate receptor antagonist +BRD-K33226500,indinavir,HIV protease inhibitor +BRD-K33453211,levocabastine,Histamine receptor antagonist +BRD-K33483813,actarit,Interleukin receptor agonist +BRD-K33882852,ZK-93423,Benzodiazepine receptor agonist +BRD-K34154330,tracazolate,GABA receptor modulator +BRD-K34157611,cimetidine,Histamine receptor antagonist +BRD-K34415467,trimethobenzamide,Histamine receptor antagonist +BRD-K34776109,glimepiride,Insulin secretagogue +BRD-K35189033,levonorgestrel,Estrogen receptor agonist +BRD-K35629949,SR-27897,CCK receptor antagonist +BRD-K35960502,niclosamide,DNA replication inhibitor +BRD-K36324071,,Purinergic receptor antagonist +BRD-K36627727,tamibarotene,Retinoid receptor agonist +BRD-K36740062,GSK-1070916,Aurora kinase inhibitor +BRD-K36862742,hydroflumethiazide,Sodium/potassium/chloride transporter inhibitor +BRD-K36927236,glyburide,Sulfonylurea +BRD-K37289225,clozapine,Dopamine receptor antagonist +BRD-K37516142,idebenone,Calcium channel modulator +BRD-K37561857,zardaverine,Phosphodiesterase inhibitor +BRD-K37694030,doxepin,Histamine receptor antagonist +BRD-K37846922,"3,3'-diindolylmethane",CHK inhibitor +BRD-K37890730,camptothecin,Topoisomerase inhibitor +BRD-K37991163,paroxetine,Selective serotonin reuptake inhibitor (SSRI) +BRD-K38197229,bumetanide,Solute carrier family member inhibitor +BRD-K38436528,imipramine,Norepinephrine reuptake inhibitor +BRD-K39339537,epirizole,Cyclooxygenase inhibitor +BRD-K40175214,torin-1,MTOR inhibitor +BRD-K40227168,vinburnine,Adrenergic receptor antagonist +BRD-K40758068,efavirenz,HIV protease inhibitor +BRD-K41160163,fenobam,Glutamate receptor antagonist +BRD-K41170226,deoxycholic-acid,Biliverdin reductase A activator +BRD-K41260949,divalproex-sodium,HDAC inhibitor +BRD-K41410256,balsalazide,Cyclooxygenase inhibitor +BRD-K41731458,triclosan,Enoyl-[acyl-carrier-protein] reductase [NADH] inhibitor +BRD-K41895714,,PI3K inhibitor +BRD-K41996876,,EGFR inhibitor +BRD-K42098891,protriptyline,Tricyclic antidepressant +BRD-K42352790,anandamide,Cannabinoid receptor agonist +BRD-K42679050,Y-27152,Potassium channel activator +BRD-K43164539,cholic-acid,Bile acid +BRD-K43797669,genistein,Tyrosine kinase inhibitor +BRD-K43887077,dopamine,Dopamine receptor agonist +BRD-K44353683,nateglinide,Insulin secretagogue +BRD-K44442813,pidotimod,Interferon receptor agonist +BRD-K44876623,zolpidem,Benzodiazepine receptor agonist +BRD-K45033733,famciclovir,DNA polymerase inhibitor +BRD-K45117373,Y-26763,Potassium channel activator +BRD-K45158365,valsartan,Angiotensin receptor antagonist +BRD-K45252063,clofibrate,PPAR receptor agonist +BRD-K45330754,diethylstilbestrol,Estrogen receptor agonist +BRD-K45542189,diethylcarbamazine,Lipoxygenase inhibitor +BRD-K46018455,bezafibrate,PPAR receptor agonist +BRD-K46424862,hymecromone,Monoamine oxidase inhibitor +BRD-K46937689,phenazone,Cyclooxygenase inhibitor +BRD-K47539947,tetradecylthioacetic-acid,Lipid peroxidase inhibitor +BRD-K47639036,flavoxate,Acetylcholine receptor antagonist +BRD-K47780086,penciclovir,DNA directed DNA polymerase inhibitor +BRD-K47869605,podophyllotoxin,Microtubule inhibitor +BRD-K47936004,piribedil,Dopamine receptor agonist +BRD-K48168960,propylthiouracil,Thyroid peroxidase inhibitor +BRD-K48300629,zonisamide,Sodium channel blocker +BRD-K48367671,febuxostat,Xanthine oxidase inhibitor +BRD-K48722258,dilazep,Adenosine reuptake inhibitor +BRD-K49111258,prazosin,Adrenergic receptor antagonist +BRD-K49328571,dasatinib,BCR-ABL kinase inhibitor +BRD-K49404994,levetiracetam,Calcium channel blocker +BRD-K49671696,ketanserin,Serotonin receptor antagonist +BRD-K49685476,TTNPB,Retinoid receptor agonist +BRD-K49865102,PD-0325901,MAP kinase inhibitor +BRD-K50168500,canertinib,EGFR inhibitor +BRD-K50398167,meclofenamic-acid,Cyclooxygenase inhibitor +BRD-K50422030,clomethiazole,GABA receptor antagonist +BRD-K50590187,capsaicin,TRPV agonist +BRD-K50859149,sulfafurazole,Bacterial antifolate +BRD-K51033547,tramadol,Norepinephrine reuptake inhibitor +BRD-K51313569,palbociclib,CDK inhibitor +BRD-K51350053,toremifene,Estrogen receptor antagonist +BRD-K51485625,ritonavir,HIV protease inhibitor +BRD-K51662849,ilomastat,Matrix metalloprotease inhibitor +BRD-K51677086,erythromycin-ethylsuccinate,Cytochrome P450 inhibitor +BRD-K51967704,BIIB021,HSP inhibitor +BRD-K52020312,metronidazole,DNA inhibitor +BRD-K52080565,nandrolone,Imidazoline receptor agonist +BRD-K52172416,anastrozole,Aromatase inhibitor +BRD-K52313696,tacedinaline,HDAC inhibitor +BRD-K52662033,lidocaine,Histamine receptor agonist +BRD-K52751261,TAK-715,p38 MAPK inhibitor +BRD-K52911425,GDC-0941,PI3K inhibitor +BRD-K52989797,clomipramine,Serotonin transporter inhibitor (SERT) +BRD-K53318339,vinpocetine,Phosphodiesterase inhibitor +BRD-K53414658,tivozanib,VEGFR inhibitor +BRD-K53665955,MK-5108,Aurora kinase inhibitor +BRD-K53737926,amitriptyline,Norepinephrine inhibitor +BRD-K53857191,risperidone,Dopamine receptor antagonist +BRD-K53972329,ruxolitinib,JAK inhibitor +BRD-K53979406,ALX-5407,Glycine transporter inhibitor +BRD-K54256913,MK-1775,WEE1 kinase inhibitor +BRD-K54416256,methimazole,Antithyroid +BRD-K54472332,elvitegravir,HIV integrase inhibitor +BRD-K54759182,dosulepin,Norepinephrine reuptake inhibitor +BRD-K55127134,fluphenazine,Dopamine receptor antagonist +BRD-K55191674,benzylpenicillin,Penicillin binding protein inhibitor +BRD-K55748775,SCH-28080,ATPase inhibitor +BRD-K55930204,phenytoin,Hydantoin antiepileptic +BRD-K55966568,orantinib,FGFR inhibitor +BRD-K56301217,ABT-737,BCL inhibitor +BRD-K56334280,amonafide,Topoisomerase inhibitor +BRD-K56343971,vemurafenib,RAF inhibitor +BRD-K56558538,ambroxol,Sodium channel blocker +BRD-K56614220,clofazimine,GK0582 inhibitor +BRD-K56957086,dacinostat,HDAC inhibitor +BRD-K57080016,selumetinib,MEK inhibitor +BRD-K57222227,indomethacin,Cyclooxygenase inhibitor +BRD-K57545991,enalapril,ACE inhibitor +BRD-K57569181,pentoxifylline,Phosphodiesterase inhibitor +BRD-K57631554,5-aminolevulinic-acid,Oxidizing agent +BRD-K59037100,oxybenzone,Lipase inhibitor +BRD-K59058766,chlorprothixene,Dopamine receptor antagonist +BRD-K59273480,propentofylline,Adenosine reuptake inhibitor +BRD-K59332007,linopirdine,Potassium channel blocker +BRD-K59369769,tozasertib,Aurora kinase inhibitor +BRD-K59574735,ubenimex,Leukotriene inhibitor +BRD-K59632282,quinidine,Sodium channel blocker +BRD-K60038276,irbesartan,Angiotensin receptor antagonist +BRD-K60160658,tiagabine,GABA uptake inhibitor +BRD-K60230970,MG-132,Proteasome inhibitor +BRD-K60237333,niacin,NAD precursor with lipid lowering effects +BRD-K60623809,,Tyrosine kinase inhibitor +BRD-K61250553,loperamide,Opioid receptor agonist +BRD-K62200014,anagrelide,Phosphodiesterase inhibitor +BRD-K62310379,fluticasone-propionate,Glucocorticoid receptor agonist +BRD-K62363391,dapsone,Bacterial antifolate +BRD-K62858456,lomerizine,Calcium channel blocker +BRD-K62965247,tipifarnib,Farnesyltransferase inhibitor +BRD-K62996583,lidoflazine,Calcium channel blocker +BRD-K63150726,JTE-907,Cannabinoid receptor inverse agonist +BRD-K63343048,orlistat,Lipase inhibitor +BRD-K63430059,methoxsalen,DNA synthesis inhibitor +BRD-K63504947,semaxanib,VEGFR inhibitor +BRD-K63550407,erythromycin,NFkB pathway inhibitor +BRD-K63630713,etacrynic-acid,Sodium/potassium/chloride transporter inhibitor +BRD-K63675182,triflupromazine,Dopamine receptor antagonist +BRD-K63750851,mycophenolic-acid,Dehydrogenase inhibitor +BRD-K63828191,raloxifene,Estrogen receptor antagonist +BRD-K64052750,gefitinib,EGFR inhibitor +BRD-K64755930,etazolate,Phosphodiesterase inhibitor +BRD-K64800655,PHA-793887,CDK inhibitor +BRD-K64890080,BI-2536,PLK inhibitor +BRD-K66175015,afatinib,EGFR inhibitor +BRD-K66412701,pazufloxacin,Topoisomerase inhibitor +BRD-K66615216,moxifloxacin,Bacterial DNA gyrase inhibitor +BRD-K66876909,linezolid,Bacterial 50S ribosomal subunit inhibitor +BRD-K67017579,cilostazol,Phosphodiesterase inhibitor +BRD-K67043667,altretamine,DNA synthesis inhibitor +BRD-K67080878,milrinone,Phosphodiesterase inhibitor +BRD-K67102207,phenylbutyrate,HDAC inhibitor +BRD-K67277431,picotamide,Thromboxane receptor antagonist +BRD-K67680372,CI-966,GAT inhibitor +BRD-K67783091,haloperidol,Dopamine receptor antagonist +BRD-K67844266,pevonedistat,Nedd activating enzyme inhibitor +BRD-K67868012,PI-103,MTOR inhibitor +BRD-K68065987,MK-2206,AKT inhibitor +BRD-K68095457,palmitoylethanolamide,Cannabinoid receptor agonist +BRD-K68103045,CGS-20625,Benzodiazepine receptor agonist +BRD-K68132782,terbinafine,Fungal squalene epoxidase inhibitor +BRD-K68392338,ZK-93426,Benzodiazepine receptor antagonist +BRD-K68488863,ENMD-2076,Aurora kinase inhibitor +BRD-K68552125,12-O-tetradecanoylphorbol-13-acetate,PKC activator +BRD-K68867920,quetiapine,Dopamine receptor antagonist +BRD-K69688083,mestinon,Cholinesterase inhibitor +BRD-K69726342,atorvastatin,HMGCR inhibitor +BRD-K70301876,escitalopram,Selective serotonin reuptake inhibitor (SSRI) +BRD-K70330367,amantadine,Glutamate receptor antagonist +BRD-K70358946,aripiprazole,Serotonin receptor agonist +BRD-K70401845,erlotinib,EGFR inhibitor +BRD-K70490179,rimcazole,Sigma receptor antagonist +BRD-K70505054,ranitidine,Histamine receptor antagonist +BRD-K70511574,HMN-214,PLK inhibitor +BRD-K70557564,zosuquidar,P-glycoprotein inhibitor +BRD-K70778732,trazodone,Adrenergic receptor antagonist +BRD-K70914287,BIBX-1382,EGFR inhibitor +BRD-K71035033,masitinib,KIT inhibitor +BRD-K71103788,duloxetine,Norepinephrine reuptake inhibitor +BRD-K71289571,zafirlukast,Leukotriene receptor antagonist +BRD-K71799949,carbamazepine,Carboxamide antiepileptic +BRD-K72029282,probucol,Atherogenesis inhibitor +BRD-K72093121,vidarabine,Antiviral +BRD-K72166146,dihydroergotamine,Serotonin receptor agonist +BRD-K72222507,quinapril,ACE inhibitor +BRD-K73109821,diazoxide,Potassium channel activator +BRD-K73196317,urapidil,Adrenergic receptor antagonist +BRD-K73319509,PF-04217903,c-Met inhibitor +BRD-K73999723,telmisartan,Angiotensin receptor antagonist +BRD-K74141488,naftifine,Fungal squalene epoxidase inhibitor +BRD-K74195153,irsogladine,Phosphodiesterase inhibitor +BRD-K74305673,IKK-2-inhibitor-V,IKK inhibitor +BRD-K74514084,pazopanib,KIT inhibitor +BRD-K74763371,bosentan,Endothelin receptor antagonist +BRD-K74765201,tomelukast,Leukotriene receptor antagonist +BRD-K75089421,procainamide,Sodium channel blocker +BRD-K75295174,alisertib,Aurora kinase inhibitor +BRD-K75641298,metoclopramide,Dopamine receptor antagonist +BRD-K75699339,rizatriptan,Serotonin receptor agonist +BRD-K76205745,losartan,Angiotensin receptor antagonist +BRD-K76617868,fasudil,Rho associated kinase inhibitor +BRD-K76674262,homoharringtonine,Protein synthesis inhibitor +BRD-K76703230,YM-155,Survivin inhibitor +BRD-K76775527,nimesulide,Cyclooxygenase inhibitor +BRD-K76810206,nicergoline,Adrenergic receptor antagonist +BRD-K76908866,CP-724714,EGFR inhibitor +BRD-K77641333,naphazoline,Adrenergic receptor agonist +BRD-K77695569,tiabendazole,Angiogenesis inhibitor +BRD-K77771411,moxonidine,Imidazoline receptor agonist +BRD-K77908580,entinostat,HDAC inhibitor +BRD-K77947974,fluspirilene,Dopamine receptor antagonist +BRD-K77987382,mebendazole,Tubulin inhibitor +BRD-K78126613,menadione,Mitochondrial DNA polymerase inhibitor +BRD-K78431006,crizotinib,ALK inhibitor +BRD-K78485176,olmesartan-medoxomil,Angiotensin receptor antagonist +BRD-K78513633,lonidamine,Glucokinase inhibitor +BRD-K78659596,ixazomib,Proteasome inhibitor +BRD-K78692225,leflunomide,Dihydroorotate dehydrogenase inhibitor +BRD-K79131256,albendazole,Anthelmintic +BRD-K79254416,decitabine,DNA methyltransferase inhibitor +BRD-K79404599,enzastaurin,PKC inhibitor +BRD-K79602928,metformin,Insulin sensitizer +BRD-K79759585,sildenafil,Phosphodiesterase inhibitor +BRD-K80396088,gliquidone,Sulfonylurea +BRD-K80738081,resveratrol,Cytochrome P450 inhibitor +BRD-K81272440,dantrolene,Calcium channel blocker +BRD-K81473089,tacrine,Acetylcholine release stimulant +BRD-K81528515,nilotinib,ABL inhibitor +BRD-K81916719,triclabendazole,Microtubule inhibitor +BRD-K82135108,elesclomol,Oxidative stress inducer +BRD-K82164249,andarine,Androgen receptor modulator +BRD-K82746043,navitoclax,BCL inhibitor +BRD-K82795137,loratadine,Histamine receptor antagonist +BRD-K82846253,repaglinide,Insulin secretagogue +BRD-K82941592,rosuvastatin,HMGCR inhibitor +BRD-K83508485,FK-888,Tachykinin antagonist +BRD-K83837640,JNJ-26481585,HDAC inhibitor +BRD-K83963101,MLN-8054,Aurora kinase inhibitor +BRD-K85090592,pilocarpine,Acetylcholine receptor agonist +BRD-K85119730,tolbutamide,ATP channel blocker +BRD-K85606544,neratinib,EGFR inhibitor +BRD-K85925969,zalcitabine,Nucleoside reverse transcriptase inhibitor +BRD-K86301799,dipyridamole,Phosphodiesterase inhibitor +BRD-K86882815,cabergoline,Dopamine receptor agonist +BRD-K86930074,cediranib,KIT inhibitor +BRD-K87909389,alvocidib,CDK inhibitor +BRD-K87990216,piretanide,Glucocorticoid receptor agonist +BRD-K88358234,xaliproden,Serotonin receptor agonist +BRD-K88429204,pyrimethamine,Dihydrofolate reductase inhibitor +BRD-K88611939,aniracetam,Glutamate receptor agonist +BRD-K88789588,letrozole,Aromatase inhibitor +BRD-K89014967,AS-703026,MEK inhibitor +BRD-K89162000,tandutinib,FLT3 inhibitor +BRD-K89274813,DMP-543,Acetylcholine release stimulant +BRD-K89348303,ramipril,ACE inhibitor +BRD-K89375097,pirenzepine,Acetylcholine receptor antagonist +BRD-K89402695,L-655240,Thromboxane receptor antagonist +BRD-K89732114,trifluoperazine,Dopamine receptor antagonist +BRD-K89997465,chlorpromazine,Dopamine receptor antagonist +BRD-K90333595,phentolamine,Adrenergic receptor antagonist +BRD-K90789829,nefazodone,Adrenergic inhibitor +BRD-K91263825,nortriptyline,Tricyclic antidepressant +BRD-K91290917,amodiaquine,Histamine receptor agonist +BRD-K91301684,noscapine,Bradykinin receptor antagonist +BRD-K91315211,betahistine,Histamine receptor agonist +BRD-K91336023,mesulergine,Dopamine receptor agonist +BRD-K91601245,mercaptopurine,Immunosuppressant +BRD-K92049597,triamterene,Sodium channel blocker +BRD-K92093830,doxorubicin,Topoisomerase inhibitor +BRD-K92301463,"16,16-dimethylprostaglandin-e2",Prostanoid receptor agonist +BRD-K92428153,mycophenolate-mofetil,Dehydrogenase inhibitor +BRD-K92428232,GSK-461364,PLK inhibitor +BRD-K92723993,imatinib,BCR-ABL kinase inhibitor +BRD-K92731339,perindopril,ACE inhibitor +BRD-K92984783,melperone,Dopamine receptor antagonist +BRD-K93034159,cladribine,Adenosine deaminase inhibitor +BRD-K93460210,lamotrigine,Serotonin receptor antagonist +BRD-K93461745,buspirone,Serotonin receptor agonist +BRD-K93618743,ipriflavone,Bone resorption inhibitor +BRD-K93645900,tadalafil,Phosphodiesterase inhibitor +BRD-K93754473,tamoxifen,Estrogen receptor antagonist +BRD-K93880783,stavudine,DNA directed DNA polymerase inhibitor +BRD-K93918653,quizartinib,FLT3 inhibitor +BRD-K94830329,ataluren,CFTR channel agonist +BRD-K95237249,probenecid,Uricosuric blocker +BRD-K95739795,tetrabenazine,Vesicular monoamine transporter inhibitor +BRD-K95763993,trapidil,PDGFR receptor inhibitor +BRD-K95901403,XL-147,PI3K inhibitor +BRD-K95921201,reserpine,Vesicular monoamine transporter inhibitor +BRD-K96319534,phentermine,Dopamine uptake inhibitor +BRD-K96720755,relcovaptan,Vasopressin receptor antagonist +BRD-K96740444,itopride,Dopamine receptor antagonist +BRD-K96862998,pirfenidone,TGF beta receptor inhibitor +BRD-K97158071,droperidol,Dopamine receptor antagonist +BRD-K97181089,amiloride,Sodium channel blocker +BRD-K97309399,thiothixene,Dopamine receptor antagonist +BRD-K97399794,quercetin,Polar auxin transport inhibitor +BRD-K97440753,dihydroergocristine,Adrenergic receptor antagonist +BRD-K97564742,mepyramine,Histamine receptor antagonist +BRD-K97799481,aminophylline,Adenosine receptor antagonist +BRD-K98493452,honokiol,AKT inhibitor +BRD-K98530306,clonidine,Adrenergic receptor agonist +BRD-K98769987,flumazenil,Benzodiazepine receptor antagonist +BRD-K99107520,felbamate,Glutamate receptor antagonist +BRD-K99257182,quinine,Hemozoin biocrystallization inhibitor +BRD-K99451608,lopinavir,HIV protease inhibitor +BRD-K99545815,PF-562271,Focal adhesion kinase inhibitor +BRD-K99749624,linifanib,PDGFR receptor inhibitor +BRD-K99964838,bosutinib,ABL inhibitor diff --git a/metadata/platemaps/2017_12_05_Batch2/platemap/AB00022422.csv b/metadata/platemaps/2017_12_05_Batch2/platemap/AB00022422.csv new file mode 100755 index 0000000..78b8118 --- /dev/null +++ b/metadata/platemaps/2017_12_05_Batch2/platemap/AB00022422.csv @@ -0,0 +1,385 @@ +compound_plate_barcode,well_position,broad_sample,mg_per_ml,mmoles_per_liter,solvent,volume_ul,amount_mg +AB00022422,A01,,,,DMSO,10,0.000 +AB00022422,A02,,,,DMSO,10,0.000 +AB00022422,A03,,,,DMSO,10,0.000 +AB00022422,A04,BRD-K63828191-003-28-9,5.10044,10,DMSO,10,0.051 +AB00022422,A05,BRD-K63828191-003-28-9,0.510044,1,DMSO,10,0.005 +AB00022422,A06,BRD-K63828191-003-28-9,5.10044e-002,1.e-001,DMSO,10,0.001 +AB00022422,A07,BRD-K27182532-001-01-5,4.6884,10,DMSO,10,0.047 +AB00022422,A08,BRD-K27182532-001-01-5,0.46884,1,DMSO,10,0.005 +AB00022422,A09,BRD-K27182532-001-01-5,4.6884e-002,1.e-001,DMSO,10,0.000 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b/metadata/platemaps/2017_12_05_Batch2/platemap/ASG003_A549_24H.txt new file mode 100755 index 0000000..47e33e6 --- /dev/null +++ b/metadata/platemaps/2017_12_05_Batch2/platemap/ASG003_A549_24H.txt @@ -0,0 +1,385 @@ +plate_map_name cell_line time_point well_position broad_sample mg_per_ml mmoles_per_liter solvent volume_ul amount_mg +ASG003_A549_24H A549 24H A01 NA NA NA DMSO 12 0 +ASG003_A549_24H A549 24H A02 NA NA NA DMSO 12 0 +ASG003_A549_24H A549 24H A03 NA NA NA DMSO 12 0 +ASG003_A549_24H A549 24H A04 BRD-K27305650-001-09-1 3.073432 10 DMSO 12 0.037 +ASG003_A549_24H A549 24H A05 BRD-K27305650-001-09-1 0.3073432 1 DMSO 12 0.004 +ASG003_A549_24H A549 24H A06 BRD-K27305650-001-09-1 0.03073432 0.1 DMSO 12 0 +ASG003_A549_24H A549 24H A07 BRD-K12184916-001-02-2 4.6953652 10 DMSO 12 0.056 +ASG003_A549_24H A549 24H A08 BRD-K12184916-001-02-2 0.46953652 1 DMSO 12 0.006 +ASG003_A549_24H A549 24H A09 BRD-K12184916-001-02-2 0.046953652 0.1 DMSO 12 0.001 +ASG003_A549_24H A549 24H A10 BRD-K44876623-001-03-7 3.073895 10 DMSO 12 0.037 +ASG003_A549_24H A549 24H A11 BRD-K44876623-001-03-7 0.3073895 1 DMSO 12 0.004 +ASG003_A549_24H A549 24H A12 BRD-K44876623-001-03-7 0.03073895 0.1 DMSO 12 0 +ASG003_A549_24H A549 24H A13 BRD-K02407574-001-04-8 2.47293 10 DMSO 12 0.03 +ASG003_A549_24H A549 24H A14 BRD-K02407574-001-04-8 0.247293 1 DMSO 12 0.003 +ASG003_A549_24H A549 24H A15 BRD-K02407574-001-04-8 0.0247293 0.1 DMSO 12 0 +ASG003_A549_24H A549 24H A16 BRD-K59369769-001-21-1 4.64586 10 DMSO 12 0.056 +ASG003_A549_24H A549 24H A17 BRD-K59369769-001-21-1 0.464586 1 DMSO 12 0.006 +ASG003_A549_24H A549 24H A18 BRD-K59369769-001-21-1 0.0464586 0.1 DMSO 12 0.001 +ASG003_A549_24H A549 24H A19 BRD-A22684332-001-01-9 2.903575 10 DMSO 12 0.035 +ASG003_A549_24H A549 24H A20 BRD-A22684332-001-01-9 0.2903575 1 DMSO 12 0.003 +ASG003_A549_24H A549 24H A21 BRD-A22684332-001-01-9 0.02903575 0.1 DMSO 12 0 +ASG003_A549_24H A549 24H A22 BRD-K00317371-001-07-9 2.92373 10 DMSO 12 0.035 +ASG003_A549_24H A549 24H A23 BRD-K00317371-001-07-9 0.292373 1 DMSO 12 0.004 +ASG003_A549_24H A549 24H A24 BRD-K00317371-001-07-9 0.0292373 0.1 DMSO 12 0 +ASG003_A549_24H A549 24H B01 NA NA NA DMSO 12 0 +ASG003_A549_24H A549 24H B02 NA NA NA DMSO 12 0 +ASG003_A549_24H A549 24H B03 NA NA NA DMSO 12 0 +ASG003_A549_24H A549 24H B04 BRD-K52233191-001-01-6 4.4145200000000004 10 DMSO 12 0.053 +ASG003_A549_24H A549 24H B05 BRD-K52233191-001-01-6 0.441452 1 DMSO 12 0.005 +ASG003_A549_24H A549 24H B06 BRD-K52233191-001-01-6 0.0441452 0.1 DMSO 12 0.001 +ASG003_A549_24H A549 24H B07 BRD-K43449605-001-01-0 2.69726 10 DMSO 12 0.032 +ASG003_A549_24H A549 24H B08 BRD-K43449605-001-01-0 0.269726 1 DMSO 12 0.003 +ASG003_A549_24H A549 24H B09 BRD-K43449605-001-01-0 0.0269726 0.1 DMSO 12 0 +ASG003_A549_24H A549 24H B10 BRD-K47832606-001-13-7 2.461924 10 DMSO 12 0.03 +ASG003_A549_24H A549 24H B11 BRD-K47832606-001-13-7 0.2461924 1 DMSO 12 0.003 +ASG003_A549_24H A549 24H B12 BRD-K47832606-001-13-7 0.02461924 0.1 DMSO 12 0 +ASG003_A549_24H A549 24H B13 BRD-K51671335-001-04-9 3.4142582 10 DMSO 12 0.041 +ASG003_A549_24H A549 24H B14 BRD-K51671335-001-04-9 0.34142582 1 DMSO 12 0.004 +ASG003_A549_24H A549 24H B15 BRD-K51671335-001-04-9 0.034142582 0.1 DMSO 12 0 +ASG003_A549_24H A549 24H B16 BRD-K70401845-001-09-0 3.934357 10 DMSO 12 0.047 +ASG003_A549_24H A549 24H B17 BRD-K70401845-001-09-0 0.3934357 1 DMSO 12 0.005 +ASG003_A549_24H A549 24H B18 BRD-K70401845-001-09-0 0.03934357 0.1 DMSO 12 0 +ASG003_A549_24H A549 24H B19 BRD-A64933752-001-02-8 3.583519 10 DMSO 12 0.043 +ASG003_A549_24H A549 24H B20 BRD-A64933752-001-02-8 0.3583519 1 DMSO 12 0.004 +ASG003_A549_24H A549 24H B21 BRD-A64933752-001-02-8 0.03583519 0.1 DMSO 12 0 +ASG003_A549_24H A549 24H B22 BRD-K05653692-001-03-3 3.905594 10 DMSO 12 0.047 +ASG003_A549_24H A549 24H B23 BRD-K05653692-001-03-3 0.3905594 1 DMSO 12 0.005 +ASG003_A549_24H A549 24H B24 BRD-K05653692-001-03-3 0.03905594 0.1 DMSO 12 0 +ASG003_A549_24H A549 24H 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a/metadata/platemaps/2017_12_05_Batch2/platemap/ASG003_A549_48H.txt b/metadata/platemaps/2017_12_05_Batch2/platemap/ASG003_A549_48H.txt new file mode 100755 index 0000000..fb575d3 --- /dev/null +++ b/metadata/platemaps/2017_12_05_Batch2/platemap/ASG003_A549_48H.txt @@ -0,0 +1,385 @@ +plate_map_name cell_line time_point well_position broad_sample mg_per_ml mmoles_per_liter solvent volume_ul amount_mg +ASG003_A549_48H A549 48H A01 NA NA NA DMSO 12 0 +ASG003_A549_48H A549 48H A02 NA NA NA DMSO 12 0 +ASG003_A549_48H A549 48H A03 NA NA NA DMSO 12 0 +ASG003_A549_48H A549 48H A04 BRD-K27305650-001-09-1 3.073432 10 DMSO 12 0.037 +ASG003_A549_48H A549 48H A05 BRD-K27305650-001-09-1 0.3073432 1 DMSO 12 0.004 +ASG003_A549_48H A549 48H A06 BRD-K27305650-001-09-1 0.03073432 0.1 DMSO 12 0 +ASG003_A549_48H A549 48H A07 BRD-K12184916-001-02-2 4.6953652 10 DMSO 12 0.056 +ASG003_A549_48H A549 48H A08 BRD-K12184916-001-02-2 0.46953652 1 DMSO 12 0.006 +ASG003_A549_48H A549 48H A09 BRD-K12184916-001-02-2 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0.046553944 0.0999995789848121 DMSO 12 0.001 +ASG003_MCF7_24H MCF7 24H M16 BRD-A74980173-001-06-9 3.753941 10 DMSO 12 0.045 +ASG003_MCF7_24H MCF7 24H M17 BRD-A74980173-001-06-9 0.3753941 1 DMSO 12 0.005 +ASG003_MCF7_24H MCF7 24H M18 BRD-A74980173-001-06-9 0.03753941 0.1 DMSO 12 0 +ASG003_MCF7_24H MCF7 24H M19 BRD-K66175015-001-01-7 4.85938 10 DMSO 12 0.058 +ASG003_MCF7_24H MCF7 24H M20 BRD-K66175015-001-01-7 0.485938 1 DMSO 12 0.006 +ASG003_MCF7_24H MCF7 24H M21 BRD-K66175015-001-01-7 0.0485938 0.1 DMSO 12 0.001 +ASG003_MCF7_24H MCF7 24H M22 BRD-K24681473-004-01-4 4.44302 10 DMSO 12 0.053 +ASG003_MCF7_24H MCF7 24H M23 BRD-K24681473-004-01-4 0.444302 1 DMSO 12 0.005 +ASG003_MCF7_24H MCF7 24H M24 BRD-K24681473-004-01-4 0.0444302 0.1 DMSO 12 0.001 +ASG003_MCF7_24H MCF7 24H N01 BRD-K49328571-001-03-6 4.88006 10 DMSO 12 0.059 +ASG003_MCF7_24H MCF7 24H N02 BRD-K49328571-001-03-6 0.488006 1 DMSO 12 0.006 +ASG003_MCF7_24H MCF7 24H N03 BRD-K49328571-001-03-6 0.0488006 0.1 DMSO 12 0.001 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BRD-K00615600-001-13-7 0.031868523 0.0994684356451219 DMSO 12 0 +ASG003_MCF7_24H MCF7 24H N16 BRD-K12343256-001-17-0 6.153948 10 DMSO 12 0.074 +ASG003_MCF7_24H MCF7 24H N17 BRD-K12343256-001-17-0 0.6153948 1 DMSO 12 0.007 +ASG003_MCF7_24H MCF7 24H N18 BRD-K12343256-001-17-0 0.06153948 0.1 DMSO 12 0.001 +ASG003_MCF7_24H MCF7 24H N19 BRD-K49865102-001-09-2 4.82193 10 DMSO 12 0.058 +ASG003_MCF7_24H MCF7 24H N20 BRD-K49865102-001-09-2 0.482193 1 DMSO 12 0.006 +ASG003_MCF7_24H MCF7 24H N21 BRD-K49865102-001-09-2 0.0482193 0.1 DMSO 12 0.001 +ASG003_MCF7_24H MCF7 24H N22 BRD-K77625799-001-07-7 4.75354 10 DMSO 12 0.057 +ASG003_MCF7_24H MCF7 24H N23 BRD-K77625799-001-07-7 0.475354 1 DMSO 12 0.006 +ASG003_MCF7_24H MCF7 24H N24 BRD-K77625799-001-07-7 0.0475354 0.1 DMSO 12 0.001 +ASG003_MCF7_24H MCF7 24H O01 NA NA NA NA 0 0 +ASG003_MCF7_24H MCF7 24H O02 NA NA NA NA 0 0 +ASG003_MCF7_24H MCF7 24H O03 NA NA NA NA 0 0 +ASG003_MCF7_24H MCF7 24H O04 NA NA NA NA 0 0 +ASG003_MCF7_24H MCF7 24H O05 NA NA NA NA 0 0 +ASG003_MCF7_24H MCF7 24H O06 NA NA NA NA 0 0 +ASG003_MCF7_24H MCF7 24H O07 BRD-K19687926-001-05-8 5.81058 10 DMSO 12 0.07 +ASG003_MCF7_24H MCF7 24H O08 BRD-K19687926-001-05-8 0.581058 1 DMSO 12 0.007 +ASG003_MCF7_24H MCF7 24H O09 BRD-K19687926-001-05-8 0.0581058 0.1 DMSO 12 0.001 +ASG003_MCF7_24H MCF7 24H O10 BRD-K76674262-001-03-3 5.456213 10 DMSO 12 0.065 +ASG003_MCF7_24H MCF7 24H O11 BRD-K76674262-001-03-3 0.5456213 1 DMSO 12 0.007 +ASG003_MCF7_24H MCF7 24H O12 BRD-K76674262-001-03-3 0.05456213 0.1 DMSO 12 0.001 +ASG003_MCF7_24H MCF7 24H O13 BRD-K62200014-003-08-9 2.92549 10 DMSO 12 0.035 +ASG003_MCF7_24H MCF7 24H O14 BRD-K62200014-003-08-9 0.292549 1 DMSO 12 0.004 +ASG003_MCF7_24H MCF7 24H O15 BRD-K62200014-003-08-9 0.0292549 0.1 DMSO 12 0 +ASG003_MCF7_24H MCF7 24H O16 BRD-K32828673-001-02-3 3.533686 10 DMSO 12 0.042 +ASG003_MCF7_24H MCF7 24H O17 BRD-K32828673-001-02-3 0.3533686 1 DMSO 12 0.004 +ASG003_MCF7_24H MCF7 24H O18 BRD-K32828673-001-02-3 0.03533686 0.1 DMSO 12 0 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BRD-K64800655-001-09-0 0.036556834 0.101130524726425 DMSO 12 0 +ASG003_MCF7_24H MCF7 24H P07 BRD-K44844162-001-01-6 4.605315 10 DMSO 12 0.055 +ASG003_MCF7_24H MCF7 24H P08 BRD-K44844162-001-01-6 0.4605315 1 DMSO 12 0.006 +ASG003_MCF7_24H MCF7 24H P09 BRD-K44844162-001-01-6 0.04605315 0.1 DMSO 12 0.001 +ASG003_MCF7_24H MCF7 24H P10 BRD-K78659596-001-03-9 3.61029 10 DMSO 12 0.043 +ASG003_MCF7_24H MCF7 24H P11 BRD-K78659596-001-03-9 0.361029 1 DMSO 12 0.004 +ASG003_MCF7_24H MCF7 24H P12 BRD-K78659596-001-03-9 0.0361029 0.1 DMSO 12 0 +ASG003_MCF7_24H MCF7 24H P13 BRD-K44227013-001-06-4 5.325595 10 DMSO 12 0.064 +ASG003_MCF7_24H MCF7 24H P14 BRD-K44227013-001-06-4 0.5325595 1 DMSO 12 0.006 +ASG003_MCF7_24H MCF7 24H P15 BRD-K44227013-001-06-4 0.05325595 0.1 DMSO 12 0.001 +ASG003_MCF7_24H MCF7 24H P16 BRD-A81866333-001-01-9 4.995197 10 DMSO 12 0.06 +ASG003_MCF7_24H MCF7 24H P17 BRD-A81866333-001-01-9 0.4995197 1 DMSO 12 0.006 +ASG003_MCF7_24H MCF7 24H P18 BRD-A81866333-001-01-9 0.04995197 0.1 DMSO 12 0.001 +ASG003_MCF7_24H MCF7 24H P19 BRD-K89732114-001-03-4 4.074955696 10 DMSO 12 0.049 +ASG003_MCF7_24H MCF7 24H P20 BRD-K89732114-001-03-4 0.40749557 1.00000000098161 DMSO 12 0.005 +ASG003_MCF7_24H MCF7 24H P21 BRD-K89732114-001-03-4 0.040749557 0.100000000098161 DMSO 12 0 +ASG003_MCF7_24H MCF7 24H P22 BRD-K71035033-001-01-4 4.98642 10 DMSO 12 0.06 +ASG003_MCF7_24H MCF7 24H P23 BRD-K71035033-001-01-4 0.498642 1 DMSO 12 0.006 +ASG003_MCF7_24H MCF7 24H P24 BRD-K71035033-001-01-4 0.0498642 0.1 DMSO 12 0.001 diff --git a/metadata/platemaps/2017_12_05_Batch2/platemap/ASG003_MCF7_48H.txt b/metadata/platemaps/2017_12_05_Batch2/platemap/ASG003_MCF7_48H.txt new file mode 100755 index 0000000..df99260 --- /dev/null +++ b/metadata/platemaps/2017_12_05_Batch2/platemap/ASG003_MCF7_48H.txt @@ -0,0 +1,385 @@ +plate_map_name cell_line time_point well_position broad_sample mg_per_ml mmoles_per_liter solvent volume_ul amount_mg +ASG003_MCF7_48H MCF7 48H A01 NA NA NA DMSO 12 0 +ASG003_MCF7_48H MCF7 48H A02 NA NA NA DMSO 12 0 +ASG003_MCF7_48H MCF7 48H A03 NA NA NA DMSO 12 0 +ASG003_MCF7_48H MCF7 48H A04 BRD-K27305650-001-09-1 3.073432 10 DMSO 12 0.037 +ASG003_MCF7_48H MCF7 48H A05 BRD-K27305650-001-09-1 0.3073432 1 DMSO 12 0.004 +ASG003_MCF7_48H MCF7 48H A06 BRD-K27305650-001-09-1 0.03073432 0.1 DMSO 12 0 +ASG003_MCF7_48H MCF7 48H A07 BRD-K12184916-001-02-2 4.6953652 10 DMSO 12 0.056 +ASG003_MCF7_48H MCF7 48H A08 BRD-K12184916-001-02-2 0.46953652 1 DMSO 12 0.006 +ASG003_MCF7_48H MCF7 48H A09 BRD-K12184916-001-02-2 0.046953652 0.1 DMSO 12 0.001 +ASG003_MCF7_48H MCF7 48H A10 BRD-K44876623-001-03-7 3.073895 10 DMSO 12 0.037 +ASG003_MCF7_48H MCF7 48H A11 BRD-K44876623-001-03-7 0.3073895 1 DMSO 12 0.004 +ASG003_MCF7_48H MCF7 48H A12 BRD-K44876623-001-03-7 0.03073895 0.1 DMSO 12 0 +ASG003_MCF7_48H MCF7 48H A13 BRD-K02407574-001-04-8 2.47293 10 DMSO 12 0.03 +ASG003_MCF7_48H MCF7 48H A14 BRD-K02407574-001-04-8 0.247293 1 DMSO 12 0.003 +ASG003_MCF7_48H MCF7 48H A15 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O17 BRD-K32828673-001-02-3 0.3533686 1 DMSO 12 0.004 +ASG003_MCF7_48H MCF7 48H O18 BRD-K32828673-001-02-3 0.03533686 0.1 DMSO 12 0 +ASG003_MCF7_48H MCF7 48H O19 BRD-A37630846-001-02-2 5.275199 10 DMSO 12 0.063 +ASG003_MCF7_48H MCF7 48H O20 BRD-A37630846-001-02-2 0.5275199 1 DMSO 12 0.006 +ASG003_MCF7_48H MCF7 48H O21 BRD-A37630846-001-02-2 0.05275199 0.1 DMSO 12 0.001 +ASG003_MCF7_48H MCF7 48H O22 BRD-K22149900-001-03-9 5.294018927 9.48519431141211 DMSO 12 0.064 +ASG003_MCF7_48H MCF7 48H O23 BRD-K22149900-001-03-9 0.529401893 0.948519431678716 DMSO 12 0.006 +ASG003_MCF7_48H MCF7 48H O24 BRD-K22149900-001-03-9 0.052940189 0.0948519426303672 DMSO 12 0.001 +ASG003_MCF7_48H MCF7 48H P01 BRD-K02130563-001-07-2 3.494262 10 DMSO 12 0.042 +ASG003_MCF7_48H MCF7 48H P02 BRD-K02130563-001-07-2 0.3494262 1 DMSO 12 0.004 +ASG003_MCF7_48H MCF7 48H P03 BRD-K02130563-001-07-2 0.03494262 0.1 DMSO 12 0 +ASG003_MCF7_48H MCF7 48H P04 BRD-K64800655-001-09-0 3.655683421 10.1130525307367 DMSO 12 0.044 +ASG003_MCF7_48H MCF7 48H P05 BRD-K64800655-001-09-0 0.365568342 1.01130525279703 DMSO 12 0.004 +ASG003_MCF7_48H MCF7 48H P06 BRD-K64800655-001-09-0 0.036556834 0.101130524726425 DMSO 12 0 +ASG003_MCF7_48H MCF7 48H P07 BRD-K44844162-001-01-6 4.605315 10 DMSO 12 0.055 +ASG003_MCF7_48H MCF7 48H P08 BRD-K44844162-001-01-6 0.4605315 1 DMSO 12 0.006 +ASG003_MCF7_48H MCF7 48H P09 BRD-K44844162-001-01-6 0.04605315 0.1 DMSO 12 0.001 +ASG003_MCF7_48H MCF7 48H P10 BRD-K78659596-001-03-9 3.61029 10 DMSO 12 0.043 +ASG003_MCF7_48H MCF7 48H P11 BRD-K78659596-001-03-9 0.361029 1 DMSO 12 0.004 +ASG003_MCF7_48H MCF7 48H P12 BRD-K78659596-001-03-9 0.0361029 0.1 DMSO 12 0 +ASG003_MCF7_48H MCF7 48H P13 BRD-K44227013-001-06-4 5.325595 10 DMSO 12 0.064 +ASG003_MCF7_48H MCF7 48H P14 BRD-K44227013-001-06-4 0.5325595 1 DMSO 12 0.006 +ASG003_MCF7_48H MCF7 48H P15 BRD-K44227013-001-06-4 0.05325595 0.1 DMSO 12 0.001 +ASG003_MCF7_48H MCF7 48H P16 BRD-A81866333-001-01-9 4.995197 10 DMSO 12 0.06 +ASG003_MCF7_48H MCF7 48H P17 BRD-A81866333-001-01-9 0.4995197 1 DMSO 12 0.006 +ASG003_MCF7_48H MCF7 48H P18 BRD-A81866333-001-01-9 0.04995197 0.1 DMSO 12 0.001 +ASG003_MCF7_48H MCF7 48H P19 BRD-K89732114-001-03-4 4.074955696 10 DMSO 12 0.049 +ASG003_MCF7_48H MCF7 48H P20 BRD-K89732114-001-03-4 0.40749557 1.00000000098161 DMSO 12 0.005 +ASG003_MCF7_48H MCF7 48H P21 BRD-K89732114-001-03-4 0.040749557 0.100000000098161 DMSO 12 0 +ASG003_MCF7_48H MCF7 48H P22 BRD-K71035033-001-01-4 4.98642 10 DMSO 12 0.06 +ASG003_MCF7_48H MCF7 48H P23 BRD-K71035033-001-01-4 0.498642 1 DMSO 12 0.006 +ASG003_MCF7_48H MCF7 48H P24 BRD-K71035033-001-01-4 0.0498642 0.1 DMSO 12 0.001 diff --git a/metadata/platemaps/2017_12_05_Batch2/platemap/ASG003_MCF7_6H.txt b/metadata/platemaps/2017_12_05_Batch2/platemap/ASG003_MCF7_6H.txt new file mode 100755 index 0000000..8a0337a --- /dev/null +++ b/metadata/platemaps/2017_12_05_Batch2/platemap/ASG003_MCF7_6H.txt @@ -0,0 +1,385 @@ +plate_map_name cell_line time_point well_position broad_sample mg_per_ml mmoles_per_liter solvent volume_ul amount_mg +ASG003_MCF7_6H MCF7 6H A01 NA NA NA DMSO 12 0 +ASG003_MCF7_6H MCF7 6H A02 NA NA NA DMSO 12 0 +ASG003_MCF7_6H MCF7 6H A03 NA NA NA DMSO 12 0 +ASG003_MCF7_6H MCF7 6H A04 BRD-K27305650-001-09-1 3.073432 10 DMSO 12 0.037 +ASG003_MCF7_6H MCF7 6H A05 BRD-K27305650-001-09-1 0.3073432 1 DMSO 12 0.004 +ASG003_MCF7_6H MCF7 6H A06 BRD-K27305650-001-09-1 0.03073432 0.1 DMSO 12 0 +ASG003_MCF7_6H MCF7 6H A07 BRD-K12184916-001-02-2 4.6953652 10 DMSO 12 0.056 +ASG003_MCF7_6H MCF7 6H A08 BRD-K12184916-001-02-2 0.46953652 1 DMSO 12 0.006 +ASG003_MCF7_6H MCF7 6H A09 BRD-K12184916-001-02-2 0.046953652 0.1 DMSO 12 0.001 +ASG003_MCF7_6H MCF7 6H A10 BRD-K44876623-001-03-7 3.073895 10 DMSO 12 0.037 +ASG003_MCF7_6H MCF7 6H A11 BRD-K44876623-001-03-7 0.3073895 1 DMSO 12 0.004 +ASG003_MCF7_6H MCF7 6H A12 BRD-K44876623-001-03-7 0.03073895 0.1 DMSO 12 0 +ASG003_MCF7_6H MCF7 6H A13 BRD-K02407574-001-04-8 2.47293 10 DMSO 12 0.03 +ASG003_MCF7_6H MCF7 6H A14 BRD-K02407574-001-04-8 0.247293 1 DMSO 12 0.003 +ASG003_MCF7_6H MCF7 6H A15 BRD-K02407574-001-04-8 0.0247293 0.1 DMSO 12 0 +ASG003_MCF7_6H MCF7 6H A16 BRD-K59369769-001-21-1 4.64586 10 DMSO 12 0.056 +ASG003_MCF7_6H MCF7 6H A17 BRD-K59369769-001-21-1 0.464586 1 DMSO 12 0.006 +ASG003_MCF7_6H MCF7 6H A18 BRD-K59369769-001-21-1 0.0464586 0.1 DMSO 12 0.001 +ASG003_MCF7_6H MCF7 6H A19 BRD-A22684332-001-01-9 2.903575 10 DMSO 12 0.035 +ASG003_MCF7_6H MCF7 6H A20 BRD-A22684332-001-01-9 0.2903575 1 DMSO 12 0.003 +ASG003_MCF7_6H MCF7 6H A21 BRD-A22684332-001-01-9 0.02903575 0.1 DMSO 12 0 +ASG003_MCF7_6H MCF7 6H A22 BRD-K00317371-001-07-9 2.92373 10 DMSO 12 0.035 +ASG003_MCF7_6H MCF7 6H A23 BRD-K00317371-001-07-9 0.292373 1 DMSO 12 0.004 +ASG003_MCF7_6H MCF7 6H A24 BRD-K00317371-001-07-9 0.0292373 0.1 DMSO 12 0 +ASG003_MCF7_6H MCF7 6H B01 NA NA NA DMSO 12 0 +ASG003_MCF7_6H MCF7 6H B02 NA NA NA DMSO 12 0 +ASG003_MCF7_6H MCF7 6H B03 NA NA NA DMSO 12 0 +ASG003_MCF7_6H MCF7 6H B04 BRD-K52233191-001-01-6 4.4145200000000004 10 DMSO 12 0.053 +ASG003_MCF7_6H MCF7 6H B05 BRD-K52233191-001-01-6 0.441452 1 DMSO 12 0.005 +ASG003_MCF7_6H MCF7 6H B06 BRD-K52233191-001-01-6 0.0441452 0.1 DMSO 12 0.001 +ASG003_MCF7_6H MCF7 6H B07 BRD-K43449605-001-01-0 2.69726 10 DMSO 12 0.032 +ASG003_MCF7_6H MCF7 6H B08 BRD-K43449605-001-01-0 0.269726 1 DMSO 12 0.003 +ASG003_MCF7_6H MCF7 6H B09 BRD-K43449605-001-01-0 0.0269726 0.1 DMSO 12 0 +ASG003_MCF7_6H MCF7 6H B10 BRD-K47832606-001-13-7 2.461924 10 DMSO 12 0.03 +ASG003_MCF7_6H MCF7 6H B11 BRD-K47832606-001-13-7 0.2461924 1 DMSO 12 0.003 +ASG003_MCF7_6H MCF7 6H B12 BRD-K47832606-001-13-7 0.02461924 0.1 DMSO 12 0 +ASG003_MCF7_6H MCF7 6H B13 BRD-K51671335-001-04-9 3.4142582 10 DMSO 12 0.041 +ASG003_MCF7_6H MCF7 6H B14 BRD-K51671335-001-04-9 0.34142582 1 DMSO 12 0.004 +ASG003_MCF7_6H MCF7 6H B15 BRD-K51671335-001-04-9 0.034142582 0.1 DMSO 12 0 +ASG003_MCF7_6H MCF7 6H B16 BRD-K70401845-001-09-0 3.934357 10 DMSO 12 0.047 +ASG003_MCF7_6H MCF7 6H B17 BRD-K70401845-001-09-0 0.3934357 1 DMSO 12 0.005 +ASG003_MCF7_6H MCF7 6H B18 BRD-K70401845-001-09-0 0.03934357 0.1 DMSO 12 0 +ASG003_MCF7_6H MCF7 6H B19 BRD-A64933752-001-02-8 3.583519 10 DMSO 12 0.043 +ASG003_MCF7_6H MCF7 6H B20 BRD-A64933752-001-02-8 0.3583519 1 DMSO 12 0.004 +ASG003_MCF7_6H MCF7 6H B21 BRD-A64933752-001-02-8 0.03583519 0.1 DMSO 12 0 +ASG003_MCF7_6H MCF7 6H B22 BRD-K05653692-001-03-3 3.905594 10 DMSO 12 0.047 +ASG003_MCF7_6H MCF7 6H B23 BRD-K05653692-001-03-3 0.3905594 1 DMSO 12 0.005 +ASG003_MCF7_6H MCF7 6H B24 BRD-K05653692-001-03-3 0.03905594 0.1 DMSO 12 0 +ASG003_MCF7_6H MCF7 6H C01 BRD-K23984367-075-05-3 6.37027 10 DMSO 12 0.076 +ASG003_MCF7_6H MCF7 6H C02 BRD-K23984367-075-05-3 0.637027 1 DMSO 12 0.008 +ASG003_MCF7_6H MCF7 6H C03 BRD-K23984367-075-05-3 0.0637027 0.1 DMSO 12 0.001 +ASG003_MCF7_6H MCF7 6H C04 BRD-K04548931-003-08-2 5.7998 10 DMSO 12 0.07 +ASG003_MCF7_6H MCF7 6H C05 BRD-K04548931-003-08-2 0.57998 1 DMSO 12 0.007 +ASG003_MCF7_6H MCF7 6H C06 BRD-K04548931-003-08-2 0.057998 0.1 DMSO 12 0.001 +ASG003_MCF7_6H MCF7 6H C07 BRD-K29905972-001-01-4 3.8646952 10 DMSO 12 0.046 +ASG003_MCF7_6H MCF7 6H C08 BRD-K29905972-001-01-4 0.38646952 1 DMSO 12 0.005 +ASG003_MCF7_6H MCF7 6H C09 BRD-K29905972-001-01-4 0.038646952 0.1 DMSO 12 0 +ASG003_MCF7_6H MCF7 6H C10 BRD-K36627727-001-01-3 3.514388 10 DMSO 12 0.042 +ASG003_MCF7_6H MCF7 6H C11 BRD-K36627727-001-01-3 0.3514388 1 DMSO 12 0.004 +ASG003_MCF7_6H MCF7 6H C12 BRD-K36627727-001-01-3 0.03514388 0.1 DMSO 12 0 +ASG003_MCF7_6H MCF7 6H C13 BRD-K64052750-001-04-3 4.46902 10 DMSO 12 0.054 +ASG003_MCF7_6H MCF7 6H C14 BRD-K64052750-001-04-3 0.446902 1 DMSO 12 0.005 +ASG003_MCF7_6H MCF7 6H C15 BRD-K64052750-001-04-3 0.0446902 0.1 DMSO 12 0.001 +ASG003_MCF7_6H MCF7 6H C16 BRD-A88080608-001-03-4 2.683502 10 DMSO 12 0.032 +ASG003_MCF7_6H MCF7 6H C17 BRD-A88080608-001-03-4 0.2683502 1 DMSO 12 0.003 +ASG003_MCF7_6H MCF7 6H C18 BRD-A88080608-001-03-4 0.02683502 0.1 DMSO 12 0 +ASG003_MCF7_6H MCF7 6H C19 BRD-K60230970-001-19-1 4.756 9.99956267682153 DMSO 12 0.057 +ASG003_MCF7_6H MCF7 6H C20 BRD-K60230970-001-19-1 4.756 9.99956267682153 DMSO 12 0.057 +ASG003_MCF7_6H MCF7 6H C21 BRD-K60230970-001-19-1 4.756 9.99956267682153 DMSO 12 0.057 +ASG003_MCF7_6H MCF7 6H C22 BRD-K60230970-001-19-1 4.756 9.99956267682153 DMSO 12 0.057 +ASG003_MCF7_6H MCF7 6H C23 BRD-K60230970-001-19-1 4.756 9.99956267682153 DMSO 12 0.057 +ASG003_MCF7_6H MCF7 6H C24 BRD-K60230970-001-19-1 4.756 9.99956267682153 DMSO 12 0.057 +ASG003_MCF7_6H MCF7 6H D01 BRD-K15600710-066-01-7 4.1349 10 DMSO 12 0.05 +ASG003_MCF7_6H MCF7 6H D02 BRD-K15600710-066-01-7 0.41349 1 DMSO 12 0.005 +ASG003_MCF7_6H MCF7 6H D03 BRD-K15600710-066-01-7 0.041349 0.1 DMSO 12 0 +ASG003_MCF7_6H MCF7 6H D04 BRD-K64890080-001-05-4 5.216544 10 DMSO 12 0.063 +ASG003_MCF7_6H MCF7 6H D05 BRD-K64890080-001-05-4 0.5216544 1 DMSO 12 0.006 +ASG003_MCF7_6H MCF7 6H D06 BRD-K64890080-001-05-4 0.05216544 0.1 DMSO 12 0.001 +ASG003_MCF7_6H MCF7 6H D07 BRD-K02113016-001-02-2 4.344628 10 DMSO 12 0.052 +ASG003_MCF7_6H MCF7 6H D08 BRD-K02113016-001-02-2 0.4344628 1 DMSO 12 0.005 +ASG003_MCF7_6H MCF7 6H D09 BRD-K02113016-001-02-2 0.04344628 0.1 DMSO 12 0.001 +ASG003_MCF7_6H MCF7 6H D10 BRD-K23478508-001-15-1 7.809385 10 DMSO 12 0.094 +ASG003_MCF7_6H MCF7 6H D11 BRD-K23478508-001-15-1 0.7809385 1 DMSO 12 0.009 +ASG003_MCF7_6H MCF7 6H D12 BRD-K23478508-001-15-1 0.07809385 0.1 DMSO 12 0.001 +ASG003_MCF7_6H MCF7 6H D13 BRD-K89162000-001-01-5 5.6270298 10 DMSO 12 0.068 +ASG003_MCF7_6H MCF7 6H D14 BRD-K89162000-001-01-5 0.56270298 1 DMSO 12 0.007 +ASG003_MCF7_6H MCF7 6H D15 BRD-K89162000-001-01-5 0.056270298 0.1 DMSO 12 0.001 +ASG003_MCF7_6H MCF7 6H D16 BRD-K63923597-001-11-8 5.294018927 10.4303333005622 DMSO 12 0.064 +ASG003_MCF7_6H MCF7 6H D17 BRD-K63923597-001-11-8 0.529401893 1.04303333064728 DMSO 12 0.006 +ASG003_MCF7_6H MCF7 6H D18 BRD-K63923597-001-11-8 0.052940189 0.104303332473665 DMSO 12 0.001 +ASG003_MCF7_6H MCF7 6H D19 BRD-K64925568-001-01-8 5.68552 10 DMSO 12 0.068 +ASG003_MCF7_6H MCF7 6H D20 BRD-K64925568-001-01-8 0.568552 1 DMSO 12 0.007 +ASG003_MCF7_6H MCF7 6H D21 BRD-K64925568-001-01-8 0.0568552 0.1 DMSO 12 0.001 +ASG003_MCF7_6H MCF7 6H D22 BRD-K71221037-001-02-4 8.069408 10 DMSO 12 0.097 +ASG003_MCF7_6H MCF7 6H D23 BRD-K71221037-001-02-4 0.8069408 1 DMSO 12 0.01 +ASG003_MCF7_6H MCF7 6H D24 BRD-K71221037-001-02-4 0.08069408 0.1 DMSO 12 0.001 +ASG003_MCF7_6H MCF7 6H E01 BRD-K66615216-001-01-9 4.014314 10 DMSO 12 0.048 +ASG003_MCF7_6H MCF7 6H E02 BRD-K66615216-001-01-9 0.4014314 1 DMSO 12 0.005 +ASG003_MCF7_6H MCF7 6H E03 BRD-K66615216-001-01-9 0.04014314 0.1 DMSO 12 0 +ASG003_MCF7_6H MCF7 6H E04 BRD-K57080016-001-03-5 4.57681 10 DMSO 12 0.055 +ASG003_MCF7_6H MCF7 6H E05 BRD-K57080016-001-03-5 0.457681 1 DMSO 12 0.005 +ASG003_MCF7_6H MCF7 6H E06 BRD-K57080016-001-03-5 0.0457681 0.1 DMSO 12 0.001 +ASG003_MCF7_6H MCF7 6H E07 BRD-K99451608-001-02-4 6.288008 10 DMSO 12 0.075 +ASG003_MCF7_6H MCF7 6H E08 BRD-K99451608-001-02-4 0.6288008 1 DMSO 12 0.008 +ASG003_MCF7_6H MCF7 6H E09 BRD-K99451608-001-02-4 0.06288008 0.1 DMSO 12 0.001 +ASG003_MCF7_6H MCF7 6H E10 BRD-K06854232-001-07-4 3.514388 10 DMSO 12 0.042 +ASG003_MCF7_6H MCF7 6H E11 BRD-K06854232-001-07-4 0.3514388 1 DMSO 12 0.004 +ASG003_MCF7_6H MCF7 6H E12 BRD-K06854232-001-07-4 0.03514388 0.1 DMSO 12 0 +ASG003_MCF7_6H MCF7 6H E13 BRD-K41213548-001-01-2 5.746625 10 DMSO 12 0.069 +ASG003_MCF7_6H MCF7 6H E14 BRD-K41213548-001-01-2 0.5746625 1 DMSO 12 0.007 +ASG003_MCF7_6H MCF7 6H E15 BRD-K41213548-001-01-2 0.05746625 0.1 DMSO 12 0.001 +ASG003_MCF7_6H MCF7 6H E16 BRD-K67566344-001-01-8 4.655447 10 DMSO 12 0.056 +ASG003_MCF7_6H MCF7 6H E17 BRD-K67566344-001-01-8 0.4655447 1 DMSO 12 0.006 +ASG003_MCF7_6H MCF7 6H E18 BRD-K67566344-001-01-8 0.04655447 0.1 DMSO 12 0.001 +ASG003_MCF7_6H MCF7 6H E19 BRD-K11267252-001-05-1 4.826166 10 DMSO 12 0.058 +ASG003_MCF7_6H MCF7 6H E20 BRD-K11267252-001-05-1 0.4826166 1 DMSO 12 0.006 +ASG003_MCF7_6H 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12 0.001 diff --git a/metadata/platemaps/2017_12_05_Batch2/platemap/ASG003_U2OS_24H.txt b/metadata/platemaps/2017_12_05_Batch2/platemap/ASG003_U2OS_24H.txt new file mode 100755 index 0000000..1d3cb5a --- /dev/null +++ b/metadata/platemaps/2017_12_05_Batch2/platemap/ASG003_U2OS_24H.txt @@ -0,0 +1,385 @@ +plate_map_name cell_line time_point well_position broad_sample mg_per_ml mmoles_per_liter solvent volume_ul amount_mg +ASG003_U2OS_24H U2OS 24H A01 NA NA NA DMSO 12 0 +ASG003_U2OS_24H U2OS 24H A02 NA NA NA DMSO 12 0 +ASG003_U2OS_24H U2OS 24H A03 NA NA NA DMSO 12 0 +ASG003_U2OS_24H U2OS 24H A04 BRD-K27305650-001-09-1 3.073432 10 DMSO 12 0.037 +ASG003_U2OS_24H U2OS 24H A05 BRD-K27305650-001-09-1 0.3073432 1 DMSO 12 0.004 +ASG003_U2OS_24H U2OS 24H A06 BRD-K27305650-001-09-1 0.03073432 0.1 DMSO 12 0 +ASG003_U2OS_24H U2OS 24H A07 BRD-K12184916-001-02-2 4.6953652 10 DMSO 12 0.056 +ASG003_U2OS_24H U2OS 24H A08 BRD-K12184916-001-02-2 0.46953652 1 DMSO 12 0.006 +ASG003_U2OS_24H U2OS 24H A09 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U2OS 24H P24 BRD-K71035033-001-01-4 0.0498642 0.1 DMSO 12 0.001 diff --git a/metadata/platemaps/2017_12_05_Batch2/platemap/ASG003_U2OS_48H.txt b/metadata/platemaps/2017_12_05_Batch2/platemap/ASG003_U2OS_48H.txt new file mode 100755 index 0000000..e2bc2d2 --- /dev/null +++ b/metadata/platemaps/2017_12_05_Batch2/platemap/ASG003_U2OS_48H.txt @@ -0,0 +1,385 @@ +plate_map_name cell_line time_point well_position broad_sample mg_per_ml mmoles_per_liter solvent volume_ul amount_mg +ASG003_U2OS_48H U2OS 48H A01 NA NA NA DMSO 12 0 +ASG003_U2OS_48H U2OS 48H A02 NA NA NA DMSO 12 0 +ASG003_U2OS_48H U2OS 48H A03 NA NA NA DMSO 12 0 +ASG003_U2OS_48H U2OS 48H A04 BRD-K27305650-001-09-1 3.073432 10 DMSO 12 0.037 +ASG003_U2OS_48H U2OS 48H A05 BRD-K27305650-001-09-1 0.3073432 1 DMSO 12 0.004 +ASG003_U2OS_48H U2OS 48H A06 BRD-K27305650-001-09-1 0.03073432 0.1 DMSO 12 0 +ASG003_U2OS_48H U2OS 48H A07 BRD-K12184916-001-02-2 4.6953652 10 DMSO 12 0.056 +ASG003_U2OS_48H U2OS 48H A08 BRD-K12184916-001-02-2 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a/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP001_A549_6H.txt b/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP001_A549_6H.txt new file mode 100755 index 0000000..e330cea --- /dev/null +++ b/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP001_A549_6H.txt @@ -0,0 +1,385 @@ +plate_map_name cell_line time_point well_position broad_sample mg_per_ml mmoles_per_liter solvent volume_ul amount_mg +LKCP001_A549_6H A549 6H A01 NA NA NA DMSO 10 0 +LKCP001_A549_6H A549 6H A02 NA NA NA DMSO 10 0 +LKCP001_A549_6H A549 6H A03 NA NA NA DMSO 10 0 +LKCP001_A549_6H A549 6H A04 BRD-K63828191-003-28-9 5.10044 10 DMSO 10 0.051 +LKCP001_A549_6H A549 6H A05 BRD-K63828191-003-28-9 0.510044 1 DMSO 10 0.005 +LKCP001_A549_6H A549 6H A06 BRD-K63828191-003-28-9 0.0510044 0.1 DMSO 10 0.001 +LKCP001_A549_6H A549 6H A07 BRD-K27182532-001-01-5 4.6884 10 DMSO 10 0.047 +LKCP001_A549_6H A549 6H A08 BRD-K27182532-001-01-5 0.46884 1 DMSO 10 0.005 +LKCP001_A549_6H A549 6H A09 BRD-K27182532-001-01-5 0.046884 0.1 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a/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP001_MCF7_24H.txt b/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP001_MCF7_24H.txt new file mode 100755 index 0000000..83d25e3 --- /dev/null +++ b/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP001_MCF7_24H.txt @@ -0,0 +1,385 @@ +plate_map_name cell_line time_point well_position broad_sample mg_per_ml mmoles_per_liter solvent volume_ul amount_mg +LKCP001_MCF7_24H MCF7 24H A01 NA NA NA DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H A02 NA NA NA DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H A03 NA NA NA DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H A04 BRD-K63828191-003-28-9 5.10044 10 DMSO 10 0.051 +LKCP001_MCF7_24H MCF7 24H A05 BRD-K63828191-003-28-9 0.510044 1 DMSO 10 0.005 +LKCP001_MCF7_24H MCF7 24H A06 BRD-K63828191-003-28-9 0.0510044 0.1 DMSO 10 0.001 +LKCP001_MCF7_24H MCF7 24H A07 BRD-K27182532-001-01-5 4.6884 10 DMSO 10 0.047 +LKCP001_MCF7_24H MCF7 24H A08 BRD-K27182532-001-01-5 0.46884 1 DMSO 10 0.005 +LKCP001_MCF7_24H MCF7 24H A09 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BRD-K41895714-001-01-4 0.257268 1 DMSO 10 0.003 +LKCP001_MCF7_24H MCF7 24H B24 BRD-K41895714-001-01-4 0.0257268 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H C01 BRD-K99964838-001-06-9 5.30446 10 DMSO 10 0.053 +LKCP001_MCF7_24H MCF7 24H C02 BRD-K99964838-001-06-9 0.530446 1 DMSO 10 0.005 +LKCP001_MCF7_24H MCF7 24H C03 BRD-K99964838-001-06-9 0.0530446 0.1 DMSO 10 0.001 +LKCP001_MCF7_24H MCF7 24H C04 BRD-K95901403-001-03-7 4.48521 10 DMSO 10 0.045 +LKCP001_MCF7_24H MCF7 24H C05 BRD-K95901403-001-03-7 0.448521 1 DMSO 10 0.004 +LKCP001_MCF7_24H MCF7 24H C06 BRD-K95901403-001-03-7 0.0448521 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H C07 BRD-K03449891-001-06-0 6.326538 10 DMSO 10 0.063 +LKCP001_MCF7_24H MCF7 24H C08 BRD-K03449891-001-06-0 0.6326538 1 DMSO 10 0.006 +LKCP001_MCF7_24H MCF7 24H C09 BRD-K03449891-001-06-0 0.06326538 0.1 DMSO 10 0.001 +LKCP001_MCF7_24H MCF7 24H C10 BRD-K93034159-001-23-3 2.85687 10 DMSO 10 0.029 +LKCP001_MCF7_24H MCF7 24H C11 BRD-K93034159-001-23-3 0.285687 1 DMSO 10 0.003 +LKCP001_MCF7_24H MCF7 24H C12 BRD-K93034159-001-23-3 0.0285687 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H C13 BRD-K05804044-001-12-8 4.515197 10 DMSO 10 0.045 +LKCP001_MCF7_24H MCF7 24H C14 BRD-K05804044-001-12-8 0.4515197 1 DMSO 10 0.005 +LKCP001_MCF7_24H MCF7 24H C15 BRD-K05804044-001-12-8 0.04515197 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H C16 BRD-K88510285-001-18-6 3.84237 10 DMSO 10 0.038 +LKCP001_MCF7_24H MCF7 24H C17 BRD-K88510285-001-18-6 0.384237 1 DMSO 10 0.004 +LKCP001_MCF7_24H MCF7 24H C18 BRD-K88510285-001-18-6 0.0384237 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H C19 BRD-A58280226-001-04-6 2.47 9.98641524080603 DMSO 10 0.025 +LKCP001_MCF7_24H MCF7 24H C20 BRD-A58280226-001-04-6 0.247 0.998641524080603 DMSO 10 0.002 +LKCP001_MCF7_24H MCF7 24H C21 BRD-A58280226-001-04-6 0.0247 0.0998641524080603 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H C22 BRD-K76205745-237-15-7 4.621 10.0019696585997 DMSO 10 0.046 +LKCP001_MCF7_24H MCF7 24H C23 BRD-K76205745-237-15-7 0.4621 1.00019696585997 DMSO 10 0.005 +LKCP001_MCF7_24H MCF7 24H C24 BRD-K76205745-237-15-7 0.04621 0.100019696585997 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H D01 BRD-K78485176-001-05-2 5.585851 10 DMSO 10 0.056 +LKCP001_MCF7_24H MCF7 24H D02 BRD-K78485176-001-05-2 0.5585851 1 DMSO 10 0.006 +LKCP001_MCF7_24H MCF7 24H D03 BRD-K78485176-001-05-2 0.05585851 0.1 DMSO 10 0.001 +LKCP001_MCF7_24H MCF7 24H D04 BRD-K72414522-001-04-2 3.71457 10 DMSO 10 0.037 +LKCP001_MCF7_24H MCF7 24H D05 BRD-K72414522-001-04-2 0.371457 1 DMSO 10 0.004 +LKCP001_MCF7_24H MCF7 24H D06 BRD-K72414522-001-04-2 0.0371457 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H D07 BRD-K52751261-001-04-6 3.99508 10 DMSO 10 0.04 +LKCP001_MCF7_24H MCF7 24H D08 BRD-K52751261-001-04-6 0.399508 1 DMSO 10 0.004 +LKCP001_MCF7_24H MCF7 24H D09 BRD-K52751261-001-04-6 0.0399508 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H D10 BRD-K92723993-001-12-5 4.936027 10 DMSO 10 0.049 +LKCP001_MCF7_24H MCF7 24H D11 BRD-K92723993-001-12-5 0.4936027 1 DMSO 10 0.005 +LKCP001_MCF7_24H MCF7 24H D12 BRD-K92723993-001-12-5 0.04936027 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H D13 BRD-K09951645-001-11-8 5.19562 10 DMSO 10 0.052 +LKCP001_MCF7_24H MCF7 24H D14 BRD-K09951645-001-11-8 0.519562 1 DMSO 10 0.005 +LKCP001_MCF7_24H MCF7 24H D15 BRD-K09951645-001-11-8 0.0519562 0.1 DMSO 10 0.001 +LKCP001_MCF7_24H MCF7 24H D16 BRD-K60866521-001-06-3 4.15423 10 DMSO 10 0.042 +LKCP001_MCF7_24H MCF7 24H D17 BRD-K60866521-001-06-3 0.415423 1 DMSO 10 0.004 +LKCP001_MCF7_24H MCF7 24H D18 BRD-K60866521-001-06-3 0.0415423 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H D19 BRD-A78723049-001-01-2 5.75619 10 DMSO 10 0.058 +LKCP001_MCF7_24H MCF7 24H D20 BRD-A78723049-001-01-2 0.575619 1 DMSO 10 0.006 +LKCP001_MCF7_24H MCF7 24H D21 BRD-A78723049-001-01-2 0.0575619 0.1 DMSO 10 0.001 +LKCP001_MCF7_24H MCF7 24H D22 BRD-K61397605-001-03-4 5.40696 10 DMSO 10 0.054 +LKCP001_MCF7_24H MCF7 24H D23 BRD-K61397605-001-03-4 0.540696 1 DMSO 10 0.005 +LKCP001_MCF7_24H MCF7 24H D24 BRD-K61397605-001-03-4 0.0540696 0.1 DMSO 10 0.001 +LKCP001_MCF7_24H MCF7 24H E01 BRD-A79768653-001-13-8 9.141719 10 DMSO 10 0.091 +LKCP001_MCF7_24H MCF7 24H E02 BRD-A79768653-001-13-8 0.9141719 1 DMSO 10 0.009 +LKCP001_MCF7_24H MCF7 24H E03 BRD-A79768653-001-13-8 0.09141719 0.1 DMSO 10 0.001 +LKCP001_MCF7_24H MCF7 24H E04 BRD-K84683831-001-01-0 4.384548 10 DMSO 10 0.044 +LKCP001_MCF7_24H MCF7 24H E05 BRD-K84683831-001-01-0 0.4384548 1 DMSO 10 0.004 +LKCP001_MCF7_24H MCF7 24H E06 BRD-K84683831-001-01-0 0.04384548 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H E07 BRD-K83837640-001-04-8 3.944701 10 DMSO 10 0.039 +LKCP001_MCF7_24H MCF7 24H E08 BRD-K83837640-001-04-8 0.3944701 1 DMSO 10 0.004 +LKCP001_MCF7_24H MCF7 24H E09 BRD-K83837640-001-04-8 0.03944701 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H E10 BRD-K17894950-001-13-5 2.622628 10 DMSO 10 0.026 +LKCP001_MCF7_24H MCF7 24H E11 BRD-K17894950-001-13-5 0.2622628 1 DMSO 10 0.003 +LKCP001_MCF7_24H MCF7 24H E12 BRD-K17894950-001-13-5 0.02622628 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H E13 BRD-K84091759-001-05-5 4.40454 10 DMSO 10 0.044 +LKCP001_MCF7_24H MCF7 24H E14 BRD-K84091759-001-05-5 0.440454 1 DMSO 10 0.004 +LKCP001_MCF7_24H MCF7 24H E15 BRD-K84091759-001-05-5 0.0440454 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H E16 BRD-K08832567-001-10-7 2.722528 10 DMSO 10 0.027 +LKCP001_MCF7_24H MCF7 24H E17 BRD-K08832567-001-10-7 0.2722528 1 DMSO 10 0.003 +LKCP001_MCF7_24H MCF7 24H E18 BRD-K08832567-001-10-7 0.02722528 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H E19 BRD-K28731095-001-01-7 2.0831825 5 DMSO 10 0.021 +LKCP001_MCF7_24H MCF7 24H E20 BRD-K28731095-001-01-7 0.20831825 0.5 DMSO 10 0.002 +LKCP001_MCF7_24H MCF7 24H E21 BRD-K28731095-001-01-7 0.020831825000000002 0.05 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H E22 BRD-K33732501-004-01-0 4.37347 10 DMSO 10 0.044 +LKCP001_MCF7_24H MCF7 24H E23 BRD-K33732501-004-01-0 0.437347 1 DMSO 10 0.004 +LKCP001_MCF7_24H MCF7 24H E24 BRD-K33732501-004-01-0 0.0437347 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H F01 BRD-K87909389-001-03-8 4.0184 10 DMSO 10 0.04 +LKCP001_MCF7_24H MCF7 24H F02 BRD-K87909389-001-03-8 0.40184 1 DMSO 10 0.004 +LKCP001_MCF7_24H MCF7 24H F03 BRD-K87909389-001-03-8 0.040184 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H F04 BRD-K85751432-001-03-3 5.72337 10 DMSO 10 0.057 +LKCP001_MCF7_24H MCF7 24H F05 BRD-K85751432-001-03-3 0.572337 1 DMSO 10 0.006 +LKCP001_MCF7_24H MCF7 24H F06 BRD-K85751432-001-03-3 0.0572337 0.1 DMSO 10 0.001 +LKCP001_MCF7_24H MCF7 24H F07 BRD-K84163249-001-02-7 4.286472 10 DMSO 10 0.043 +LKCP001_MCF7_24H MCF7 24H F08 BRD-K84163249-001-02-7 0.4286472 1 DMSO 10 0.004 +LKCP001_MCF7_24H MCF7 24H F09 BRD-K84163249-001-02-7 0.04286472 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H F10 BRD-K13390322-001-04-8 3.82244 10 DMSO 10 0.038 +LKCP001_MCF7_24H MCF7 24H F11 BRD-K13390322-001-04-8 0.382244 1 DMSO 10 0.004 +LKCP001_MCF7_24H MCF7 24H F12 BRD-K13390322-001-04-8 0.0382244 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H F13 BRD-K64800655-001-02-5 3.614817 10 DMSO 10 0.036 +LKCP001_MCF7_24H MCF7 24H F14 BRD-K64800655-001-02-5 0.3614817 1 DMSO 10 0.004 +LKCP001_MCF7_24H MCF7 24H F15 BRD-K64800655-001-02-5 0.03614817 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H F16 BRD-K49807096-003-13-0 4.6095 10 DMSO 10 0.046 +LKCP001_MCF7_24H MCF7 24H F17 BRD-K49807096-003-13-0 0.46095 1 DMSO 10 0.005 +LKCP001_MCF7_24H MCF7 24H F18 BRD-K49807096-003-13-0 0.046095 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H F19 BRD-A27376179-001-01-3 2.197313 5 DMSO 10 0.022 +LKCP001_MCF7_24H MCF7 24H F20 BRD-A27376179-001-01-3 0.2197313 0.5 DMSO 10 0.002 +LKCP001_MCF7_24H MCF7 24H F21 BRD-A27376179-001-01-3 0.02197313 0.05 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H F22 BRD-K76197012-001-01-2 4.756191 10 DMSO 10 0.048 +LKCP001_MCF7_24H MCF7 24H F23 BRD-K76197012-001-01-2 0.4756191 1 DMSO 10 0.005 +LKCP001_MCF7_24H MCF7 24H F24 BRD-K76197012-001-01-2 0.04756191 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H G01 BRD-K81528515-001-06-2 5.295158 10 DMSO 10 0.053 +LKCP001_MCF7_24H MCF7 24H G02 BRD-K81528515-001-06-2 0.5295158 1 DMSO 10 0.005 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BRD-K66404838-310-01-1 0.0429935 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H H07 BRD-K07691486-001-10-6 3.544493 10 DMSO 10 0.035 +LKCP001_MCF7_24H MCF7 24H H08 BRD-K07691486-001-10-6 0.3544493 1 DMSO 10 0.004 +LKCP001_MCF7_24H MCF7 24H H09 BRD-K07691486-001-10-6 0.03544493 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H H10 BRD-K73999723-001-10-5 5.146169 10 DMSO 10 0.051 +LKCP001_MCF7_24H MCF7 24H H11 BRD-K73999723-001-10-5 0.5146169 1 DMSO 10 0.005 +LKCP001_MCF7_24H MCF7 24H H12 BRD-K73999723-001-10-5 0.05146169 0.1 DMSO 10 0.001 +LKCP001_MCF7_24H MCF7 24H H13 BRD-K70511574-001-01-0 4.2447 10 DMSO 10 0.042 +LKCP001_MCF7_24H MCF7 24H H14 BRD-K70511574-001-01-0 0.42447 1 DMSO 10 0.004 +LKCP001_MCF7_24H MCF7 24H H15 BRD-K70511574-001-01-0 0.042447 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H H16 BRD-K12867552-001-04-7 3.974244 10 DMSO 10 0.04 +LKCP001_MCF7_24H MCF7 24H H17 BRD-K12867552-001-04-7 0.3974244 1 DMSO 10 0.004 +LKCP001_MCF7_24H MCF7 24H H18 BRD-K12867552-001-04-7 0.03974244 0.1 DMSO 10 0 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BRD-K66538826-001-05-6 4.4751 10 DMSO 10 0.045 +LKCP001_MCF7_24H MCF7 24H I08 BRD-K66538826-001-05-6 0.44751 1 DMSO 10 0.004 +LKCP001_MCF7_24H MCF7 24H I09 BRD-K66538826-001-05-6 0.044751 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H I10 BRD-K09078998-001-01-4 9.902061 10 DMSO 10 0.099 +LKCP001_MCF7_24H MCF7 24H I11 BRD-K09078998-001-01-4 0.9902061 1 DMSO 10 0.01 +LKCP001_MCF7_24H MCF7 24H I12 BRD-K09078998-001-01-4 0.09902061 0.1 DMSO 10 0.001 +LKCP001_MCF7_24H MCF7 24H I13 BRD-K56957086-001-05-5 3.794522 10 DMSO 10 0.038 +LKCP001_MCF7_24H MCF7 24H I14 BRD-K56957086-001-05-5 0.3794522 1 DMSO 10 0.004 +LKCP001_MCF7_24H MCF7 24H I15 BRD-K56957086-001-05-5 0.03794522 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H I16 BRD-K56343971-001-12-2 4.89922 10 DMSO 10 0.049 +LKCP001_MCF7_24H MCF7 24H I17 BRD-K56343971-001-12-2 0.489922 1 DMSO 10 0.005 +LKCP001_MCF7_24H MCF7 24H I18 BRD-K56343971-001-12-2 0.0489922 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H I19 BRD-A87130939-001-07-9 3.023649 10 DMSO 10 0.03 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BRD-K59325863-001-03-6 0.405964876 0.982311719799165 DMSO 10 0.004 +LKCP001_MCF7_24H MCF7 24H J09 BRD-K59325863-001-03-6 0.040596488 0.0982311729477951 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H J10 BRD-K57080016-001-19-1 4.57681 10 DMSO 10 0.046 +LKCP001_MCF7_24H MCF7 24H J11 BRD-K57080016-001-19-1 0.457681 1 DMSO 10 0.005 +LKCP001_MCF7_24H MCF7 24H J12 BRD-K57080016-001-19-1 0.0457681 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H J13 BRD-K49865102-001-01-9 4.82193 10 DMSO 10 0.048 +LKCP001_MCF7_24H MCF7 24H J14 BRD-K49865102-001-01-9 0.482193 1 DMSO 10 0.005 +LKCP001_MCF7_24H MCF7 24H J15 BRD-K49865102-001-01-9 0.0482193 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H J16 BRD-A03249105-001-01-9 6.06771 10 DMSO 10 0.061 +LKCP001_MCF7_24H MCF7 24H J17 BRD-A03249105-001-01-9 0.606771 1 DMSO 10 0.006 +LKCP001_MCF7_24H MCF7 24H J18 BRD-A03249105-001-01-9 0.0606771 0.1 DMSO 10 0.001 +LKCP001_MCF7_24H MCF7 24H J19 BRD-K41260949-001-01-8 1.4421144 10 DMSO 10 0.014 +LKCP001_MCF7_24H MCF7 24H J20 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DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H K10 NA NA NA DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H K11 NA NA NA DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H K12 NA NA NA DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H K13 BRD-K13662825-001-02-6 3.96486 10 DMSO 10 0.04 +LKCP001_MCF7_24H MCF7 24H K14 BRD-K13662825-001-02-6 0.396486 1 DMSO 10 0.004 +LKCP001_MCF7_24H MCF7 24H K15 BRD-K13662825-001-02-6 0.0396486 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H K16 BRD-K45542189-048-15-5 3.914168 10 DMSO 10 0.039 +LKCP001_MCF7_24H MCF7 24H K17 BRD-K45542189-048-15-5 0.3914168 1 DMSO 10 0.004 +LKCP001_MCF7_24H MCF7 24H K18 BRD-K45542189-048-15-5 0.03914168 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H K19 BRD-K05619559-001-12-7 4.675145 10 DMSO 10 0.047 +LKCP001_MCF7_24H MCF7 24H K20 BRD-K05619559-001-12-7 0.4675145 1 DMSO 10 0.005 +LKCP001_MCF7_24H MCF7 24H K21 BRD-K05619559-001-12-7 0.04675145 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H K22 BRD-A06935312-001-03-5 5.167092 10 DMSO 10 0.052 +LKCP001_MCF7_24H MCF7 24H K23 BRD-A06935312-001-03-5 0.5167092 1 DMSO 10 0.005 +LKCP001_MCF7_24H MCF7 24H K24 BRD-A06935312-001-03-5 0.05167092 0.1 DMSO 10 0.001 +LKCP001_MCF7_24H MCF7 24H L01 BRD-K56195681-001-01-0 3.834591 10 DMSO 10 0.038 +LKCP001_MCF7_24H MCF7 24H L02 BRD-K56195681-001-01-0 0.3834591 1 DMSO 10 0.004 +LKCP001_MCF7_24H MCF7 24H L03 BRD-K56195681-001-01-0 0.03834591 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H L04 BRD-K42417338-045-01-9 4.775473 10 DMSO 10 0.048 +LKCP001_MCF7_24H MCF7 24H L05 BRD-K42417338-045-01-9 0.4775473 1 DMSO 10 0.005 +LKCP001_MCF7_24H MCF7 24H L06 BRD-K42417338-045-01-9 0.04775473 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H L07 BRD-A08545410-311-03-4 4.98911 10 DMSO 10 0.05 +LKCP001_MCF7_24H MCF7 24H L08 BRD-A08545410-311-03-4 0.498911 1 DMSO 10 0.005 +LKCP001_MCF7_24H MCF7 24H L09 BRD-A08545410-311-03-4 0.0498911 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H L10 BRD-K49328571-001-27-5 4.88006 10 DMSO 10 0.049 +LKCP001_MCF7_24H MCF7 24H L11 BRD-K49328571-001-27-5 0.488006 1 DMSO 10 0.005 +LKCP001_MCF7_24H MCF7 24H L12 BRD-K49328571-001-27-5 0.0488006 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H L13 BRD-K47554101-001-01-2 3.943974 10 DMSO 10 0.039 +LKCP001_MCF7_24H MCF7 24H L14 BRD-K47554101-001-01-2 0.3943974 1 DMSO 10 0.004 +LKCP001_MCF7_24H MCF7 24H L15 BRD-K47554101-001-01-2 0.03943974 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H L16 BRD-K44844162-001-01-6 4.605315 10 DMSO 10 0.046 +LKCP001_MCF7_24H MCF7 24H L17 BRD-K44844162-001-01-6 0.4605315 1 DMSO 10 0.005 +LKCP001_MCF7_24H MCF7 24H L18 BRD-K44844162-001-01-6 0.04605315 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H L19 BRD-A25619068-003-03-4 1.29867 5 DMSO 10 0.013 +LKCP001_MCF7_24H MCF7 24H L20 BRD-A25619068-003-03-4 0.129867 0.5 DMSO 10 0.001 +LKCP001_MCF7_24H MCF7 24H L21 BRD-A25619068-003-03-4 0.0129867 0.05 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H L22 BRD-K07857022-002-01-1 4.425479 10 DMSO 10 0.044 +LKCP001_MCF7_24H MCF7 24H L23 BRD-K07857022-002-01-1 0.4425479 1 DMSO 10 0.004 +LKCP001_MCF7_24H MCF7 24H L24 BRD-K07857022-002-01-1 0.04425479 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H M01 BRD-K35189033-001-30-3 3.124458 10 DMSO 10 0.031 +LKCP001_MCF7_24H MCF7 24H M02 BRD-K35189033-001-30-3 0.3124458 1 DMSO 10 0.003 +LKCP001_MCF7_24H MCF7 24H M03 BRD-K35189033-001-30-3 0.03124458 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H M04 BRD-K11717138-001-16-2 4.24083 10 DMSO 10 0.042 +LKCP001_MCF7_24H MCF7 24H M05 BRD-K11717138-001-16-2 0.424083 1 DMSO 10 0.004 +LKCP001_MCF7_24H MCF7 24H M06 BRD-K11717138-001-16-2 0.0424083 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H M07 BRD-K34022604-001-04-1 3.03677 10 DMSO 10 0.03 +LKCP001_MCF7_24H MCF7 24H M08 BRD-K34022604-001-04-1 0.303677 1 DMSO 10 0.003 +LKCP001_MCF7_24H MCF7 24H M09 BRD-K34022604-001-04-1 0.0303677 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H M10 BRD-K28822270-001-03-7 3.655683421 10.462596187805 DMSO 10 0.037 +LKCP001_MCF7_24H MCF7 24H M11 BRD-K28822270-001-03-7 0.365568342 1.0462596184943 DMSO 10 0.004 +LKCP001_MCF7_24H MCF7 24H M12 BRD-K28822270-001-03-7 0.036556834 0.104625961277028 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H M13 BRD-K17743125-001-07-6 3.18348 10 DMSO 10 0.032 +LKCP001_MCF7_24H MCF7 24H M14 BRD-K17743125-001-07-6 0.318348 1 DMSO 10 0.003 +LKCP001_MCF7_24H MCF7 24H M15 BRD-K17743125-001-07-6 0.0318348 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H M16 BRD-A31159102-003-13-0 3.457870696 10 DMSO 10 0.035 +LKCP001_MCF7_24H MCF7 24H M17 BRD-A31159102-003-13-0 0.34578707 1.00000000115678 DMSO 10 0.003 +LKCP001_MCF7_24H MCF7 24H M18 BRD-A31159102-003-13-0 0.034578707 0.100000000115678 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H M19 BRD-K77908580-001-05-4 3.764085 10 DMSO 10 0.038 +LKCP001_MCF7_24H MCF7 24H M20 BRD-K77908580-001-05-4 0.3764085 1 DMSO 10 0.004 +LKCP001_MCF7_24H MCF7 24H M21 BRD-K77908580-001-05-4 0.037640849999999997 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H M22 BRD-K74065929-001-08-0 5.294018927 10.0330648894775 DMSO 10 0.053 +LKCP001_MCF7_24H MCF7 24H M23 BRD-K74065929-001-08-0 0.529401893 1.0033064895163 DMSO 10 0.005 +LKCP001_MCF7_24H MCF7 24H M24 BRD-K74065929-001-08-0 0.052940189 0.100330648383079 DMSO 10 0.001 +LKCP001_MCF7_24H MCF7 24H N01 BRD-K36280065-001-01-1 3.123696 10 DMSO 10 0.031 +LKCP001_MCF7_24H MCF7 24H N02 BRD-K36280065-001-01-1 0.3123696 1 DMSO 10 0.003 +LKCP001_MCF7_24H MCF7 24H N03 BRD-K36280065-001-01-1 0.03123696 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H N04 BRD-K37991163-050-05-1 4.454375632 10 DMSO 10 0.045 +LKCP001_MCF7_24H MCF7 24H N05 BRD-K37991163-050-05-1 0.445437563 0.999999999551003 DMSO 10 0.004 +LKCP001_MCF7_24H MCF7 24H N06 BRD-K37991163-050-05-1 0.044543756 0.0999999992816053 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H N07 BRD-K31342827-001-10-4 4.124837 10 DMSO 10 0.041 +LKCP001_MCF7_24H MCF7 24H N08 BRD-K31342827-001-10-4 0.4124837 1 DMSO 10 0.004 +LKCP001_MCF7_24H MCF7 24H N09 BRD-K31342827-001-10-4 0.04124837 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H N10 BRD-K28456624-001-02-9 4.546844 10 DMSO 10 0.045 +LKCP001_MCF7_24H MCF7 24H N11 BRD-K28456624-001-02-9 0.4546844 1 DMSO 10 0.005 +LKCP001_MCF7_24H MCF7 24H N12 BRD-K28456624-001-02-9 0.04546844 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H N13 BRD-K17705806-003-05-1 4.47957 10 DMSO 10 0.045 +LKCP001_MCF7_24H MCF7 24H N14 BRD-K17705806-003-05-1 0.447957 1 DMSO 10 0.004 +LKCP001_MCF7_24H MCF7 24H N15 BRD-K17705806-003-05-1 0.0447957 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H N16 BRD-K17555800-001-01-9 5.13004 10 DMSO 10 0.051 +LKCP001_MCF7_24H MCF7 24H N17 BRD-K17555800-001-01-9 0.513004 1 DMSO 10 0.005 +LKCP001_MCF7_24H MCF7 24H N18 BRD-K17555800-001-01-9 0.0513004 0.1 DMSO 10 0.001 +LKCP001_MCF7_24H MCF7 24H N19 BRD-A26503646-001-14-1 3.024079 10 DMSO 10 0.03 +LKCP001_MCF7_24H MCF7 24H N20 BRD-A26503646-001-14-1 0.3024079 1 DMSO 10 0.003 +LKCP001_MCF7_24H MCF7 24H N21 BRD-A26503646-001-14-1 0.03024079 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H N22 BRD-K70301876-034-06-1 4.144268 10 DMSO 10 0.041 +LKCP001_MCF7_24H MCF7 24H N23 BRD-K70301876-034-06-1 0.4144268 1 DMSO 10 0.004 +LKCP001_MCF7_24H MCF7 24H N24 BRD-K70301876-034-06-1 0.04144268 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H O01 NA NA NA DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H O02 NA NA NA DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H O03 NA NA NA DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H O04 NA NA NA DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H O05 NA NA NA DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H O06 NA NA NA DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H O07 BRD-K97472745-001-01-8 3.084141 10 DMSO 10 0.031 +LKCP001_MCF7_24H MCF7 24H O08 BRD-K97472745-001-01-8 0.3084141 1 DMSO 10 0.003 +LKCP001_MCF7_24H MCF7 24H O09 BRD-K97472745-001-01-8 0.03084141 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H O10 BRD-K05104363-001-02-7 4.7866 10 DMSO 10 0.048 +LKCP001_MCF7_24H MCF7 24H O11 BRD-K05104363-001-02-7 0.47866 1 DMSO 10 0.005 +LKCP001_MCF7_24H MCF7 24H O12 BRD-K05104363-001-02-7 0.047866 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H O13 BRD-A73741725-001-01-0 2.964034 10 DMSO 10 0.03 +LKCP001_MCF7_24H MCF7 24H O14 BRD-A73741725-001-01-0 0.2964034 1 DMSO 10 0.003 +LKCP001_MCF7_24H MCF7 24H O15 BRD-A73741725-001-01-0 0.02964034 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H O16 BRD-A36331462-001-01-3 5.32609 10 DMSO 10 0.053 +LKCP001_MCF7_24H MCF7 24H O17 BRD-A36331462-001-01-3 0.532609 1 DMSO 10 0.005 +LKCP001_MCF7_24H MCF7 24H O18 BRD-A36331462-001-01-3 0.0532609 0.1 DMSO 10 0.001 +LKCP001_MCF7_24H MCF7 24H O19 BRD-K17075857-001-15-0 2.14048 10 DMSO 10 0.021 +LKCP001_MCF7_24H MCF7 24H O20 BRD-K17075857-001-15-0 0.214048 1 DMSO 10 0.002 +LKCP001_MCF7_24H MCF7 24H O21 BRD-K17075857-001-15-0 0.0214048 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H O22 BRD-K03390685-001-01-7 5.3131 10 DMSO 10 0.053 +LKCP001_MCF7_24H MCF7 24H O23 BRD-K03390685-001-01-7 0.53131 1 DMSO 10 0.005 +LKCP001_MCF7_24H MCF7 24H O24 BRD-K03390685-001-01-7 0.053131 0.1 DMSO 10 0.001 +LKCP001_MCF7_24H MCF7 24H P01 BRD-K16803204-001-01-6 4.25504 10 DMSO 10 0.043 +LKCP001_MCF7_24H MCF7 24H P02 BRD-K16803204-001-01-6 0.425504 1 DMSO 10 0.004 +LKCP001_MCF7_24H MCF7 24H P03 BRD-K16803204-001-01-6 0.0425504 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H P04 BRD-K04887706-001-10-7 5.516404 10 DMSO 10 0.055 +LKCP001_MCF7_24H MCF7 24H P05 BRD-K04887706-001-10-7 0.5516404 1 DMSO 10 0.006 +LKCP001_MCF7_24H MCF7 24H P06 BRD-K04887706-001-10-7 0.05516404 0.1 DMSO 10 0.001 +LKCP001_MCF7_24H MCF7 24H P07 BRD-K07572174-001-17-0 3.683799 10 DMSO 10 0.037 +LKCP001_MCF7_24H MCF7 24H P08 BRD-K07572174-001-17-0 0.3683799 1 DMSO 10 0.004 +LKCP001_MCF7_24H MCF7 24H P09 BRD-K07572174-001-17-0 0.03683799 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H P10 BRD-A92537424-001-03-9 3.374553 10 DMSO 10 0.034 +LKCP001_MCF7_24H MCF7 24H P11 BRD-A92537424-001-03-9 0.3374553 1 DMSO 10 0.003 +LKCP001_MCF7_24H MCF7 24H P12 BRD-A92537424-001-03-9 0.03374553 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H P13 BRD-A62025033-001-02-6 10.302871 10 DMSO 10 0.103 +LKCP001_MCF7_24H MCF7 24H P14 BRD-A62025033-001-02-6 1.0302871 1 DMSO 10 0.01 +LKCP001_MCF7_24H MCF7 24H P15 BRD-A62025033-001-02-6 0.10302871 0.1 DMSO 10 0.001 +LKCP001_MCF7_24H MCF7 24H P16 BRD-A30051119-315-02-2 7.8175948 10 DMSO 10 0.078 +LKCP001_MCF7_24H MCF7 24H P17 BRD-A30051119-315-02-2 0.78175948 1 DMSO 10 0.008 +LKCP001_MCF7_24H MCF7 24H P18 BRD-A30051119-315-02-2 0.078175948 0.1 DMSO 10 0.001 +LKCP001_MCF7_24H MCF7 24H P19 BRD-K16730910-001-02-4 4.82815 10 DMSO 10 0.048 +LKCP001_MCF7_24H MCF7 24H P20 BRD-K16730910-001-02-4 0.482815 1 DMSO 10 0.005 +LKCP001_MCF7_24H MCF7 24H P21 BRD-K16730910-001-02-4 0.0482815 0.1 DMSO 10 0 +LKCP001_MCF7_24H MCF7 24H P22 BRD-K49456274-001-01-9 5.41022 10 DMSO 10 0.054 +LKCP001_MCF7_24H MCF7 24H P23 BRD-K49456274-001-01-9 0.541022 1 DMSO 10 0.005 +LKCP001_MCF7_24H MCF7 24H P24 BRD-K49456274-001-01-9 0.0541022 0.1 DMSO 10 0.001 diff --git a/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP001_MCF7_48H.txt b/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP001_MCF7_48H.txt new file mode 100755 index 0000000..5923a53 --- /dev/null +++ b/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP001_MCF7_48H.txt @@ -0,0 +1,385 @@ +plate_map_name cell_line time_point well_position broad_sample mg_per_ml mmoles_per_liter solvent volume_ul amount_mg +LKCP001_MCF7_48H MCF7 48H A01 NA NA NA DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H A02 NA NA NA DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H A03 NA NA NA DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H A04 BRD-K63828191-003-28-9 5.10044 10 DMSO 10 0.051 +LKCP001_MCF7_48H MCF7 48H A05 BRD-K63828191-003-28-9 0.510044 1 DMSO 10 0.005 +LKCP001_MCF7_48H MCF7 48H A06 BRD-K63828191-003-28-9 0.0510044 0.1 DMSO 10 0.001 +LKCP001_MCF7_48H MCF7 48H A07 BRD-K27182532-001-01-5 4.6884 10 DMSO 10 0.047 +LKCP001_MCF7_48H MCF7 48H A08 BRD-K27182532-001-01-5 0.46884 1 DMSO 10 0.005 +LKCP001_MCF7_48H MCF7 48H A09 BRD-K27182532-001-01-5 0.046884 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H A10 BRD-K67102207-236-04-4 1.871908 10 DMSO 10 0.019 +LKCP001_MCF7_48H MCF7 48H A11 BRD-K67102207-236-04-4 0.1871908 1 DMSO 10 0.002 +LKCP001_MCF7_48H MCF7 48H A12 BRD-K67102207-236-04-4 0.01871908 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H A13 BRD-K99792991-001-35-6 4.06904 10 DMSO 10 0.041 +LKCP001_MCF7_48H MCF7 48H A14 BRD-K99792991-001-35-6 0.406904 1 DMSO 10 0.004 +LKCP001_MCF7_48H MCF7 48H A15 BRD-K99792991-001-35-6 0.0406904 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H A16 BRD-K96550715-001-04-2 4.569857401 9.67079215570588 DMSO 10 0.046 +LKCP001_MCF7_48H MCF7 48H A17 BRD-K96550715-001-04-2 0.45698574 0.967079215358967 DMSO 10 0.005 +LKCP001_MCF7_48H MCF7 48H A18 BRD-K96550715-001-04-2 0.045698574 0.0967079215358967 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H A19 BRD-K51747290-001-15-6 0.760547 10 DMSO 10 0.008 +LKCP001_MCF7_48H MCF7 48H A20 BRD-K51747290-001-15-6 0.0760547 1 DMSO 10 0.001 +LKCP001_MCF7_48H MCF7 48H A21 BRD-K51747290-001-15-6 0.00760547 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H A22 BRD-K52313696-001-08-1 2.692985 10 DMSO 10 0.027 +LKCP001_MCF7_48H MCF7 48H A23 BRD-K52313696-001-08-1 0.2692985 1 DMSO 10 0.003 +LKCP001_MCF7_48H MCF7 48H A24 BRD-K52313696-001-08-1 0.02692985 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H B01 NA NA NA DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H B02 NA NA NA DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H B03 NA NA NA DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H B04 BRD-K45158365-001-09-8 4.355188 10 DMSO 10 0.044 +LKCP001_MCF7_48H MCF7 48H B05 BRD-K45158365-001-09-8 0.4355188 1 DMSO 10 0.004 +LKCP001_MCF7_48H MCF7 48H B06 BRD-K45158365-001-09-8 0.04355188 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H B07 BRD-A50998626-001-01-3 4.064279 10 DMSO 10 0.041 +LKCP001_MCF7_48H MCF7 48H B08 BRD-A50998626-001-01-3 0.4064279 1 DMSO 10 0.004 +LKCP001_MCF7_48H MCF7 48H B09 BRD-A50998626-001-01-3 0.04064279 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H B10 BRD-K37687095-001-04-4 4.612268 10 DMSO 10 0.046 +LKCP001_MCF7_48H MCF7 48H B11 BRD-K37687095-001-04-4 0.4612268 1 DMSO 10 0.005 +LKCP001_MCF7_48H MCF7 48H B12 BRD-K37687095-001-04-4 0.04612268 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H B13 BRD-K98493452-001-01-6 2.6633432 10 DMSO 10 0.027 +LKCP001_MCF7_48H MCF7 48H B14 BRD-K98493452-001-01-6 0.26633432 1 DMSO 10 0.003 +LKCP001_MCF7_48H MCF7 48H B15 BRD-K98493452-001-01-6 0.026633432 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H B16 BRD-K43966364-237-03-0 3.89488 10 DMSO 10 0.039 +LKCP001_MCF7_48H MCF7 48H B17 BRD-K43966364-237-03-0 0.389488 1 DMSO 10 0.004 +LKCP001_MCF7_48H MCF7 48H B18 BRD-K43966364-237-03-0 0.0389488 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H B19 BRD-K51313569-001-10-2 4.475328 10 DMSO 10 0.045 +LKCP001_MCF7_48H MCF7 48H B20 BRD-K51313569-001-10-2 0.4475328 1 DMSO 10 0.004 +LKCP001_MCF7_48H MCF7 48H B21 BRD-K51313569-001-10-2 0.04475328 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H B22 BRD-K41895714-001-01-4 2.57268 10 DMSO 10 0.026 +LKCP001_MCF7_48H MCF7 48H B23 BRD-K41895714-001-01-4 0.257268 1 DMSO 10 0.003 +LKCP001_MCF7_48H MCF7 48H B24 BRD-K41895714-001-01-4 0.0257268 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H C01 BRD-K99964838-001-06-9 5.30446 10 DMSO 10 0.053 +LKCP001_MCF7_48H MCF7 48H C02 BRD-K99964838-001-06-9 0.530446 1 DMSO 10 0.005 +LKCP001_MCF7_48H MCF7 48H C03 BRD-K99964838-001-06-9 0.0530446 0.1 DMSO 10 0.001 +LKCP001_MCF7_48H MCF7 48H C04 BRD-K95901403-001-03-7 4.48521 10 DMSO 10 0.045 +LKCP001_MCF7_48H MCF7 48H C05 BRD-K95901403-001-03-7 0.448521 1 DMSO 10 0.004 +LKCP001_MCF7_48H MCF7 48H C06 BRD-K95901403-001-03-7 0.0448521 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H C07 BRD-K03449891-001-06-0 6.326538 10 DMSO 10 0.063 +LKCP001_MCF7_48H MCF7 48H C08 BRD-K03449891-001-06-0 0.6326538 1 DMSO 10 0.006 +LKCP001_MCF7_48H MCF7 48H C09 BRD-K03449891-001-06-0 0.06326538 0.1 DMSO 10 0.001 +LKCP001_MCF7_48H MCF7 48H C10 BRD-K93034159-001-23-3 2.85687 10 DMSO 10 0.029 +LKCP001_MCF7_48H MCF7 48H C11 BRD-K93034159-001-23-3 0.285687 1 DMSO 10 0.003 +LKCP001_MCF7_48H MCF7 48H C12 BRD-K93034159-001-23-3 0.0285687 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H C13 BRD-K05804044-001-12-8 4.515197 10 DMSO 10 0.045 +LKCP001_MCF7_48H MCF7 48H C14 BRD-K05804044-001-12-8 0.4515197 1 DMSO 10 0.005 +LKCP001_MCF7_48H MCF7 48H C15 BRD-K05804044-001-12-8 0.04515197 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H C16 BRD-K88510285-001-18-6 3.84237 10 DMSO 10 0.038 +LKCP001_MCF7_48H MCF7 48H C17 BRD-K88510285-001-18-6 0.384237 1 DMSO 10 0.004 +LKCP001_MCF7_48H MCF7 48H C18 BRD-K88510285-001-18-6 0.0384237 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H C19 BRD-A58280226-001-04-6 2.47 9.98641524080603 DMSO 10 0.025 +LKCP001_MCF7_48H MCF7 48H C20 BRD-A58280226-001-04-6 0.247 0.998641524080603 DMSO 10 0.002 +LKCP001_MCF7_48H MCF7 48H C21 BRD-A58280226-001-04-6 0.0247 0.0998641524080603 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H C22 BRD-K76205745-237-15-7 4.621 10.0019696585997 DMSO 10 0.046 +LKCP001_MCF7_48H MCF7 48H C23 BRD-K76205745-237-15-7 0.4621 1.00019696585997 DMSO 10 0.005 +LKCP001_MCF7_48H MCF7 48H C24 BRD-K76205745-237-15-7 0.04621 0.100019696585997 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H D01 BRD-K78485176-001-05-2 5.585851 10 DMSO 10 0.056 +LKCP001_MCF7_48H MCF7 48H D02 BRD-K78485176-001-05-2 0.5585851 1 DMSO 10 0.006 +LKCP001_MCF7_48H MCF7 48H D03 BRD-K78485176-001-05-2 0.05585851 0.1 DMSO 10 0.001 +LKCP001_MCF7_48H MCF7 48H D04 BRD-K72414522-001-04-2 3.71457 10 DMSO 10 0.037 +LKCP001_MCF7_48H MCF7 48H D05 BRD-K72414522-001-04-2 0.371457 1 DMSO 10 0.004 +LKCP001_MCF7_48H MCF7 48H D06 BRD-K72414522-001-04-2 0.0371457 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H D07 BRD-K52751261-001-04-6 3.99508 10 DMSO 10 0.04 +LKCP001_MCF7_48H MCF7 48H D08 BRD-K52751261-001-04-6 0.399508 1 DMSO 10 0.004 +LKCP001_MCF7_48H MCF7 48H D09 BRD-K52751261-001-04-6 0.0399508 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H D10 BRD-K92723993-001-12-5 4.936027 10 DMSO 10 0.049 +LKCP001_MCF7_48H MCF7 48H D11 BRD-K92723993-001-12-5 0.4936027 1 DMSO 10 0.005 +LKCP001_MCF7_48H MCF7 48H D12 BRD-K92723993-001-12-5 0.04936027 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H D13 BRD-K09951645-001-11-8 5.19562 10 DMSO 10 0.052 +LKCP001_MCF7_48H MCF7 48H D14 BRD-K09951645-001-11-8 0.519562 1 DMSO 10 0.005 +LKCP001_MCF7_48H MCF7 48H D15 BRD-K09951645-001-11-8 0.0519562 0.1 DMSO 10 0.001 +LKCP001_MCF7_48H MCF7 48H D16 BRD-K60866521-001-06-3 4.15423 10 DMSO 10 0.042 +LKCP001_MCF7_48H MCF7 48H D17 BRD-K60866521-001-06-3 0.415423 1 DMSO 10 0.004 +LKCP001_MCF7_48H MCF7 48H D18 BRD-K60866521-001-06-3 0.0415423 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H D19 BRD-A78723049-001-01-2 5.75619 10 DMSO 10 0.058 +LKCP001_MCF7_48H MCF7 48H D20 BRD-A78723049-001-01-2 0.575619 1 DMSO 10 0.006 +LKCP001_MCF7_48H MCF7 48H D21 BRD-A78723049-001-01-2 0.0575619 0.1 DMSO 10 0.001 +LKCP001_MCF7_48H MCF7 48H D22 BRD-K61397605-001-03-4 5.40696 10 DMSO 10 0.054 +LKCP001_MCF7_48H MCF7 48H D23 BRD-K61397605-001-03-4 0.540696 1 DMSO 10 0.005 +LKCP001_MCF7_48H MCF7 48H D24 BRD-K61397605-001-03-4 0.0540696 0.1 DMSO 10 0.001 +LKCP001_MCF7_48H MCF7 48H E01 BRD-A79768653-001-13-8 9.141719 10 DMSO 10 0.091 +LKCP001_MCF7_48H MCF7 48H E02 BRD-A79768653-001-13-8 0.9141719 1 DMSO 10 0.009 +LKCP001_MCF7_48H MCF7 48H E03 BRD-A79768653-001-13-8 0.09141719 0.1 DMSO 10 0.001 +LKCP001_MCF7_48H MCF7 48H E04 BRD-K84683831-001-01-0 4.384548 10 DMSO 10 0.044 +LKCP001_MCF7_48H MCF7 48H E05 BRD-K84683831-001-01-0 0.4384548 1 DMSO 10 0.004 +LKCP001_MCF7_48H MCF7 48H E06 BRD-K84683831-001-01-0 0.04384548 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H E07 BRD-K83837640-001-04-8 3.944701 10 DMSO 10 0.039 +LKCP001_MCF7_48H MCF7 48H E08 BRD-K83837640-001-04-8 0.3944701 1 DMSO 10 0.004 +LKCP001_MCF7_48H MCF7 48H E09 BRD-K83837640-001-04-8 0.03944701 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H E10 BRD-K17894950-001-13-5 2.622628 10 DMSO 10 0.026 +LKCP001_MCF7_48H MCF7 48H E11 BRD-K17894950-001-13-5 0.2622628 1 DMSO 10 0.003 +LKCP001_MCF7_48H MCF7 48H E12 BRD-K17894950-001-13-5 0.02622628 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H E13 BRD-K84091759-001-05-5 4.40454 10 DMSO 10 0.044 +LKCP001_MCF7_48H MCF7 48H E14 BRD-K84091759-001-05-5 0.440454 1 DMSO 10 0.004 +LKCP001_MCF7_48H MCF7 48H E15 BRD-K84091759-001-05-5 0.0440454 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H E16 BRD-K08832567-001-10-7 2.722528 10 DMSO 10 0.027 +LKCP001_MCF7_48H MCF7 48H E17 BRD-K08832567-001-10-7 0.2722528 1 DMSO 10 0.003 +LKCP001_MCF7_48H MCF7 48H E18 BRD-K08832567-001-10-7 0.02722528 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H E19 BRD-K28731095-001-01-7 2.0831825 5 DMSO 10 0.021 +LKCP001_MCF7_48H MCF7 48H E20 BRD-K28731095-001-01-7 0.20831825 0.5 DMSO 10 0.002 +LKCP001_MCF7_48H MCF7 48H E21 BRD-K28731095-001-01-7 0.020831825000000002 0.05 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H E22 BRD-K33732501-004-01-0 4.37347 10 DMSO 10 0.044 +LKCP001_MCF7_48H MCF7 48H E23 BRD-K33732501-004-01-0 0.437347 1 DMSO 10 0.004 +LKCP001_MCF7_48H MCF7 48H E24 BRD-K33732501-004-01-0 0.0437347 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H F01 BRD-K87909389-001-03-8 4.0184 10 DMSO 10 0.04 +LKCP001_MCF7_48H MCF7 48H F02 BRD-K87909389-001-03-8 0.40184 1 DMSO 10 0.004 +LKCP001_MCF7_48H MCF7 48H F03 BRD-K87909389-001-03-8 0.040184 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H F04 BRD-K85751432-001-03-3 5.72337 10 DMSO 10 0.057 +LKCP001_MCF7_48H MCF7 48H F05 BRD-K85751432-001-03-3 0.572337 1 DMSO 10 0.006 +LKCP001_MCF7_48H MCF7 48H F06 BRD-K85751432-001-03-3 0.0572337 0.1 DMSO 10 0.001 +LKCP001_MCF7_48H MCF7 48H F07 BRD-K84163249-001-02-7 4.286472 10 DMSO 10 0.043 +LKCP001_MCF7_48H MCF7 48H F08 BRD-K84163249-001-02-7 0.4286472 1 DMSO 10 0.004 +LKCP001_MCF7_48H MCF7 48H F09 BRD-K84163249-001-02-7 0.04286472 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H F10 BRD-K13390322-001-04-8 3.82244 10 DMSO 10 0.038 +LKCP001_MCF7_48H MCF7 48H F11 BRD-K13390322-001-04-8 0.382244 1 DMSO 10 0.004 +LKCP001_MCF7_48H MCF7 48H F12 BRD-K13390322-001-04-8 0.0382244 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H F13 BRD-K64800655-001-02-5 3.614817 10 DMSO 10 0.036 +LKCP001_MCF7_48H MCF7 48H F14 BRD-K64800655-001-02-5 0.3614817 1 DMSO 10 0.004 +LKCP001_MCF7_48H MCF7 48H F15 BRD-K64800655-001-02-5 0.03614817 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H F16 BRD-K49807096-003-13-0 4.6095 10 DMSO 10 0.046 +LKCP001_MCF7_48H MCF7 48H F17 BRD-K49807096-003-13-0 0.46095 1 DMSO 10 0.005 +LKCP001_MCF7_48H MCF7 48H F18 BRD-K49807096-003-13-0 0.046095 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H F19 BRD-A27376179-001-01-3 2.197313 5 DMSO 10 0.022 +LKCP001_MCF7_48H MCF7 48H F20 BRD-A27376179-001-01-3 0.2197313 0.5 DMSO 10 0.002 +LKCP001_MCF7_48H MCF7 48H F21 BRD-A27376179-001-01-3 0.02197313 0.05 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H F22 BRD-K76197012-001-01-2 4.756191 10 DMSO 10 0.048 +LKCP001_MCF7_48H MCF7 48H F23 BRD-K76197012-001-01-2 0.4756191 1 DMSO 10 0.005 +LKCP001_MCF7_48H MCF7 48H F24 BRD-K76197012-001-01-2 0.04756191 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H G01 BRD-K81528515-001-06-2 5.295158 10 DMSO 10 0.053 +LKCP001_MCF7_48H MCF7 48H G02 BRD-K81528515-001-06-2 0.5295158 1 DMSO 10 0.005 +LKCP001_MCF7_48H MCF7 48H G03 BRD-K81528515-001-06-2 0.05295158 0.1 DMSO 10 0.001 +LKCP001_MCF7_48H MCF7 48H G04 BRD-K51544265-044-03-4 6.355931 10 DMSO 10 0.064 +LKCP001_MCF7_48H MCF7 48H G05 BRD-K51544265-044-03-4 0.6355931 1 DMSO 10 0.006 +LKCP001_MCF7_48H MCF7 48H G06 BRD-K51544265-044-03-4 0.06355931 0.1 DMSO 10 0.001 +LKCP001_MCF7_48H MCF7 48H G07 BRD-K78659596-001-04-7 3.61029 10 DMSO 10 0.036 +LKCP001_MCF7_48H MCF7 48H G08 BRD-K78659596-001-04-7 0.361029 1 DMSO 10 0.004 +LKCP001_MCF7_48H MCF7 48H G09 BRD-K78659596-001-04-7 0.0361029 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H G10 BRD-K77625799-001-07-7 4.75354 10 DMSO 10 0.048 +LKCP001_MCF7_48H MCF7 48H G11 BRD-K77625799-001-07-7 0.475354 1 DMSO 10 0.005 +LKCP001_MCF7_48H MCF7 48H G12 BRD-K77625799-001-07-7 0.0475354 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H G13 NA NA NA DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H G14 NA NA NA DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H G15 NA NA NA DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H G16 NA NA NA DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H G17 NA NA NA DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H G18 NA NA NA DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H G19 BRD-K41410256-304-02-2 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H08 BRD-K07691486-001-10-6 0.3544493 1 DMSO 10 0.004 +LKCP001_MCF7_48H MCF7 48H H09 BRD-K07691486-001-10-6 0.03544493 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H H10 BRD-K73999723-001-10-5 5.146169 10 DMSO 10 0.051 +LKCP001_MCF7_48H MCF7 48H H11 BRD-K73999723-001-10-5 0.5146169 1 DMSO 10 0.005 +LKCP001_MCF7_48H MCF7 48H H12 BRD-K73999723-001-10-5 0.05146169 0.1 DMSO 10 0.001 +LKCP001_MCF7_48H MCF7 48H H13 BRD-K70511574-001-01-0 4.2447 10 DMSO 10 0.042 +LKCP001_MCF7_48H MCF7 48H H14 BRD-K70511574-001-01-0 0.42447 1 DMSO 10 0.004 +LKCP001_MCF7_48H MCF7 48H H15 BRD-K70511574-001-01-0 0.042447 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H H16 BRD-K12867552-001-04-7 3.974244 10 DMSO 10 0.04 +LKCP001_MCF7_48H MCF7 48H H17 BRD-K12867552-001-04-7 0.3974244 1 DMSO 10 0.004 +LKCP001_MCF7_48H MCF7 48H H18 BRD-K12867552-001-04-7 0.03974244 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H H19 BRD-K93754473-001-06-0 3.7151456 10 DMSO 10 0.037 +LKCP001_MCF7_48H MCF7 48H H20 BRD-K93754473-001-06-0 0.37151456 1 DMSO 10 0.004 +LKCP001_MCF7_48H MCF7 48H H21 BRD-K93754473-001-06-0 0.037151456 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H H22 BRD-K29950728-048-18-2 5.98083 10 DMSO 10 0.06 +LKCP001_MCF7_48H MCF7 48H H23 BRD-K29950728-048-18-2 0.598083 1 DMSO 10 0.006 +LKCP001_MCF7_48H MCF7 48H H24 BRD-K29950728-048-18-2 0.0598083 0.1 DMSO 10 0.001 +LKCP001_MCF7_48H MCF7 48H I01 BRD-K69726595-001-01-2 3.994139 10 DMSO 10 0.04 +LKCP001_MCF7_48H MCF7 48H I02 BRD-K69726595-001-01-2 0.3994139 1 DMSO 10 0.004 +LKCP001_MCF7_48H MCF7 48H I03 BRD-K69726595-001-01-2 0.03994139 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H I04 BRD-A78195072-001-06-2 1.11102 10 DMSO 10 0.011 +LKCP001_MCF7_48H MCF7 48H I05 BRD-A78195072-001-06-2 0.111102 1 DMSO 10 0.001 +LKCP001_MCF7_48H MCF7 48H I06 BRD-A78195072-001-06-2 0.0111102 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H I07 BRD-K66538826-001-05-6 4.4751 10 DMSO 10 0.045 +LKCP001_MCF7_48H MCF7 48H I08 BRD-K66538826-001-05-6 0.44751 1 DMSO 10 0.004 +LKCP001_MCF7_48H MCF7 48H I09 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3.123696 10 DMSO 10 0.031 +LKCP001_MCF7_48H MCF7 48H N02 BRD-K36280065-001-01-1 0.3123696 1 DMSO 10 0.003 +LKCP001_MCF7_48H MCF7 48H N03 BRD-K36280065-001-01-1 0.03123696 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H N04 BRD-K37991163-050-05-1 4.454375632 10 DMSO 10 0.045 +LKCP001_MCF7_48H MCF7 48H N05 BRD-K37991163-050-05-1 0.445437563 0.999999999551003 DMSO 10 0.004 +LKCP001_MCF7_48H MCF7 48H N06 BRD-K37991163-050-05-1 0.044543756 0.0999999992816053 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H N07 BRD-K31342827-001-10-4 4.124837 10 DMSO 10 0.041 +LKCP001_MCF7_48H MCF7 48H N08 BRD-K31342827-001-10-4 0.4124837 1 DMSO 10 0.004 +LKCP001_MCF7_48H MCF7 48H N09 BRD-K31342827-001-10-4 0.04124837 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H N10 BRD-K28456624-001-02-9 4.546844 10 DMSO 10 0.045 +LKCP001_MCF7_48H MCF7 48H N11 BRD-K28456624-001-02-9 0.4546844 1 DMSO 10 0.005 +LKCP001_MCF7_48H MCF7 48H N12 BRD-K28456624-001-02-9 0.04546844 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H N13 BRD-K17705806-003-05-1 4.47957 10 DMSO 10 0.045 +LKCP001_MCF7_48H MCF7 48H N14 BRD-K17705806-003-05-1 0.447957 1 DMSO 10 0.004 +LKCP001_MCF7_48H MCF7 48H N15 BRD-K17705806-003-05-1 0.0447957 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H N16 BRD-K17555800-001-01-9 5.13004 10 DMSO 10 0.051 +LKCP001_MCF7_48H MCF7 48H N17 BRD-K17555800-001-01-9 0.513004 1 DMSO 10 0.005 +LKCP001_MCF7_48H MCF7 48H N18 BRD-K17555800-001-01-9 0.0513004 0.1 DMSO 10 0.001 +LKCP001_MCF7_48H MCF7 48H N19 BRD-A26503646-001-14-1 3.024079 10 DMSO 10 0.03 +LKCP001_MCF7_48H MCF7 48H N20 BRD-A26503646-001-14-1 0.3024079 1 DMSO 10 0.003 +LKCP001_MCF7_48H MCF7 48H N21 BRD-A26503646-001-14-1 0.03024079 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H N22 BRD-K70301876-034-06-1 4.144268 10 DMSO 10 0.041 +LKCP001_MCF7_48H MCF7 48H N23 BRD-K70301876-034-06-1 0.4144268 1 DMSO 10 0.004 +LKCP001_MCF7_48H MCF7 48H N24 BRD-K70301876-034-06-1 0.04144268 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H O01 NA NA NA DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H O02 NA NA NA DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H O03 NA NA NA DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H O04 NA NA NA DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H O05 NA NA NA DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H O06 NA NA NA DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H O07 BRD-K97472745-001-01-8 3.084141 10 DMSO 10 0.031 +LKCP001_MCF7_48H MCF7 48H O08 BRD-K97472745-001-01-8 0.3084141 1 DMSO 10 0.003 +LKCP001_MCF7_48H MCF7 48H O09 BRD-K97472745-001-01-8 0.03084141 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H O10 BRD-K05104363-001-02-7 4.7866 10 DMSO 10 0.048 +LKCP001_MCF7_48H MCF7 48H O11 BRD-K05104363-001-02-7 0.47866 1 DMSO 10 0.005 +LKCP001_MCF7_48H MCF7 48H O12 BRD-K05104363-001-02-7 0.047866 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H O13 BRD-A73741725-001-01-0 2.964034 10 DMSO 10 0.03 +LKCP001_MCF7_48H MCF7 48H O14 BRD-A73741725-001-01-0 0.2964034 1 DMSO 10 0.003 +LKCP001_MCF7_48H MCF7 48H O15 BRD-A73741725-001-01-0 0.02964034 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H O16 BRD-A36331462-001-01-3 5.32609 10 DMSO 10 0.053 +LKCP001_MCF7_48H MCF7 48H O17 BRD-A36331462-001-01-3 0.532609 1 DMSO 10 0.005 +LKCP001_MCF7_48H MCF7 48H O18 BRD-A36331462-001-01-3 0.0532609 0.1 DMSO 10 0.001 +LKCP001_MCF7_48H MCF7 48H O19 BRD-K17075857-001-15-0 2.14048 10 DMSO 10 0.021 +LKCP001_MCF7_48H MCF7 48H O20 BRD-K17075857-001-15-0 0.214048 1 DMSO 10 0.002 +LKCP001_MCF7_48H MCF7 48H O21 BRD-K17075857-001-15-0 0.0214048 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H O22 BRD-K03390685-001-01-7 5.3131 10 DMSO 10 0.053 +LKCP001_MCF7_48H MCF7 48H O23 BRD-K03390685-001-01-7 0.53131 1 DMSO 10 0.005 +LKCP001_MCF7_48H MCF7 48H O24 BRD-K03390685-001-01-7 0.053131 0.1 DMSO 10 0.001 +LKCP001_MCF7_48H MCF7 48H P01 BRD-K16803204-001-01-6 4.25504 10 DMSO 10 0.043 +LKCP001_MCF7_48H MCF7 48H P02 BRD-K16803204-001-01-6 0.425504 1 DMSO 10 0.004 +LKCP001_MCF7_48H MCF7 48H P03 BRD-K16803204-001-01-6 0.0425504 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H P04 BRD-K04887706-001-10-7 5.516404 10 DMSO 10 0.055 +LKCP001_MCF7_48H MCF7 48H P05 BRD-K04887706-001-10-7 0.5516404 1 DMSO 10 0.006 +LKCP001_MCF7_48H MCF7 48H P06 BRD-K04887706-001-10-7 0.05516404 0.1 DMSO 10 0.001 +LKCP001_MCF7_48H MCF7 48H P07 BRD-K07572174-001-17-0 3.683799 10 DMSO 10 0.037 +LKCP001_MCF7_48H MCF7 48H P08 BRD-K07572174-001-17-0 0.3683799 1 DMSO 10 0.004 +LKCP001_MCF7_48H MCF7 48H P09 BRD-K07572174-001-17-0 0.03683799 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H P10 BRD-A92537424-001-03-9 3.374553 10 DMSO 10 0.034 +LKCP001_MCF7_48H MCF7 48H P11 BRD-A92537424-001-03-9 0.3374553 1 DMSO 10 0.003 +LKCP001_MCF7_48H MCF7 48H P12 BRD-A92537424-001-03-9 0.03374553 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H P13 BRD-A62025033-001-02-6 10.302871 10 DMSO 10 0.103 +LKCP001_MCF7_48H MCF7 48H P14 BRD-A62025033-001-02-6 1.0302871 1 DMSO 10 0.01 +LKCP001_MCF7_48H MCF7 48H P15 BRD-A62025033-001-02-6 0.10302871 0.1 DMSO 10 0.001 +LKCP001_MCF7_48H MCF7 48H P16 BRD-A30051119-315-02-2 7.8175948 10 DMSO 10 0.078 +LKCP001_MCF7_48H MCF7 48H P17 BRD-A30051119-315-02-2 0.78175948 1 DMSO 10 0.008 +LKCP001_MCF7_48H MCF7 48H P18 BRD-A30051119-315-02-2 0.078175948 0.1 DMSO 10 0.001 +LKCP001_MCF7_48H MCF7 48H P19 BRD-K16730910-001-02-4 4.82815 10 DMSO 10 0.048 +LKCP001_MCF7_48H MCF7 48H P20 BRD-K16730910-001-02-4 0.482815 1 DMSO 10 0.005 +LKCP001_MCF7_48H MCF7 48H P21 BRD-K16730910-001-02-4 0.0482815 0.1 DMSO 10 0 +LKCP001_MCF7_48H MCF7 48H P22 BRD-K49456274-001-01-9 5.41022 10 DMSO 10 0.054 +LKCP001_MCF7_48H MCF7 48H P23 BRD-K49456274-001-01-9 0.541022 1 DMSO 10 0.005 +LKCP001_MCF7_48H MCF7 48H P24 BRD-K49456274-001-01-9 0.0541022 0.1 DMSO 10 0.001 diff --git a/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP001_MCF7_6H.txt b/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP001_MCF7_6H.txt new file mode 100755 index 0000000..f4b303d --- /dev/null +++ b/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP001_MCF7_6H.txt @@ -0,0 +1,385 @@ +plate_map_name cell_line time_point well_position broad_sample mg_per_ml mmoles_per_liter solvent volume_ul amount_mg +LKCP001_MCF7_6H MCF7 6H A01 NA NA NA DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H A02 NA NA NA DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H A03 NA NA NA DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H A04 BRD-K63828191-003-28-9 5.10044 10 DMSO 10 0.051 +LKCP001_MCF7_6H MCF7 6H A05 BRD-K63828191-003-28-9 0.510044 1 DMSO 10 0.005 +LKCP001_MCF7_6H MCF7 6H A06 BRD-K63828191-003-28-9 0.0510044 0.1 DMSO 10 0.001 +LKCP001_MCF7_6H MCF7 6H A07 BRD-K27182532-001-01-5 4.6884 10 DMSO 10 0.047 +LKCP001_MCF7_6H MCF7 6H A08 BRD-K27182532-001-01-5 0.46884 1 DMSO 10 0.005 +LKCP001_MCF7_6H MCF7 6H A09 BRD-K27182532-001-01-5 0.046884 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H A10 BRD-K67102207-236-04-4 1.871908 10 DMSO 10 0.019 +LKCP001_MCF7_6H MCF7 6H A11 BRD-K67102207-236-04-4 0.1871908 1 DMSO 10 0.002 +LKCP001_MCF7_6H MCF7 6H A12 BRD-K67102207-236-04-4 0.01871908 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H A13 BRD-K99792991-001-35-6 4.06904 10 DMSO 10 0.041 +LKCP001_MCF7_6H MCF7 6H A14 BRD-K99792991-001-35-6 0.406904 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H A15 BRD-K99792991-001-35-6 0.0406904 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H A16 BRD-K96550715-001-04-2 4.569857401 9.67079215570588 DMSO 10 0.046 +LKCP001_MCF7_6H MCF7 6H A17 BRD-K96550715-001-04-2 0.45698574 0.967079215358967 DMSO 10 0.005 +LKCP001_MCF7_6H MCF7 6H A18 BRD-K96550715-001-04-2 0.045698574 0.0967079215358967 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H A19 BRD-K51747290-001-15-6 0.760547 10 DMSO 10 0.008 +LKCP001_MCF7_6H MCF7 6H A20 BRD-K51747290-001-15-6 0.0760547 1 DMSO 10 0.001 +LKCP001_MCF7_6H MCF7 6H A21 BRD-K51747290-001-15-6 0.00760547 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H A22 BRD-K52313696-001-08-1 2.692985 10 DMSO 10 0.027 +LKCP001_MCF7_6H MCF7 6H A23 BRD-K52313696-001-08-1 0.2692985 1 DMSO 10 0.003 +LKCP001_MCF7_6H MCF7 6H A24 BRD-K52313696-001-08-1 0.02692985 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H B01 NA NA NA DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H B02 NA NA NA DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H B03 NA NA NA DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H B04 BRD-K45158365-001-09-8 4.355188 10 DMSO 10 0.044 +LKCP001_MCF7_6H MCF7 6H B05 BRD-K45158365-001-09-8 0.4355188 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H B06 BRD-K45158365-001-09-8 0.04355188 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H B07 BRD-A50998626-001-01-3 4.064279 10 DMSO 10 0.041 +LKCP001_MCF7_6H MCF7 6H B08 BRD-A50998626-001-01-3 0.4064279 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H B09 BRD-A50998626-001-01-3 0.04064279 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H B10 BRD-K37687095-001-04-4 4.612268 10 DMSO 10 0.046 +LKCP001_MCF7_6H MCF7 6H B11 BRD-K37687095-001-04-4 0.4612268 1 DMSO 10 0.005 +LKCP001_MCF7_6H MCF7 6H B12 BRD-K37687095-001-04-4 0.04612268 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H B13 BRD-K98493452-001-01-6 2.6633432 10 DMSO 10 0.027 +LKCP001_MCF7_6H MCF7 6H B14 BRD-K98493452-001-01-6 0.26633432 1 DMSO 10 0.003 +LKCP001_MCF7_6H MCF7 6H B15 BRD-K98493452-001-01-6 0.026633432 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H B16 BRD-K43966364-237-03-0 3.89488 10 DMSO 10 0.039 +LKCP001_MCF7_6H MCF7 6H B17 BRD-K43966364-237-03-0 0.389488 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H B18 BRD-K43966364-237-03-0 0.0389488 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H B19 BRD-K51313569-001-10-2 4.475328 10 DMSO 10 0.045 +LKCP001_MCF7_6H MCF7 6H B20 BRD-K51313569-001-10-2 0.4475328 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H B21 BRD-K51313569-001-10-2 0.04475328 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H B22 BRD-K41895714-001-01-4 2.57268 10 DMSO 10 0.026 +LKCP001_MCF7_6H MCF7 6H B23 BRD-K41895714-001-01-4 0.257268 1 DMSO 10 0.003 +LKCP001_MCF7_6H MCF7 6H B24 BRD-K41895714-001-01-4 0.0257268 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H C01 BRD-K99964838-001-06-9 5.30446 10 DMSO 10 0.053 +LKCP001_MCF7_6H MCF7 6H C02 BRD-K99964838-001-06-9 0.530446 1 DMSO 10 0.005 +LKCP001_MCF7_6H MCF7 6H C03 BRD-K99964838-001-06-9 0.0530446 0.1 DMSO 10 0.001 +LKCP001_MCF7_6H MCF7 6H C04 BRD-K95901403-001-03-7 4.48521 10 DMSO 10 0.045 +LKCP001_MCF7_6H MCF7 6H C05 BRD-K95901403-001-03-7 0.448521 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H C06 BRD-K95901403-001-03-7 0.0448521 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H C07 BRD-K03449891-001-06-0 6.326538 10 DMSO 10 0.063 +LKCP001_MCF7_6H MCF7 6H C08 BRD-K03449891-001-06-0 0.6326538 1 DMSO 10 0.006 +LKCP001_MCF7_6H MCF7 6H C09 BRD-K03449891-001-06-0 0.06326538 0.1 DMSO 10 0.001 +LKCP001_MCF7_6H MCF7 6H C10 BRD-K93034159-001-23-3 2.85687 10 DMSO 10 0.029 +LKCP001_MCF7_6H MCF7 6H C11 BRD-K93034159-001-23-3 0.285687 1 DMSO 10 0.003 +LKCP001_MCF7_6H MCF7 6H C12 BRD-K93034159-001-23-3 0.0285687 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H C13 BRD-K05804044-001-12-8 4.515197 10 DMSO 10 0.045 +LKCP001_MCF7_6H MCF7 6H C14 BRD-K05804044-001-12-8 0.4515197 1 DMSO 10 0.005 +LKCP001_MCF7_6H MCF7 6H C15 BRD-K05804044-001-12-8 0.04515197 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H C16 BRD-K88510285-001-18-6 3.84237 10 DMSO 10 0.038 +LKCP001_MCF7_6H MCF7 6H C17 BRD-K88510285-001-18-6 0.384237 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H C18 BRD-K88510285-001-18-6 0.0384237 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H C19 BRD-A58280226-001-04-6 2.47 9.98641524080603 DMSO 10 0.025 +LKCP001_MCF7_6H MCF7 6H C20 BRD-A58280226-001-04-6 0.247 0.998641524080603 DMSO 10 0.002 +LKCP001_MCF7_6H MCF7 6H C21 BRD-A58280226-001-04-6 0.0247 0.0998641524080603 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H C22 BRD-K76205745-237-15-7 4.621 10.0019696585997 DMSO 10 0.046 +LKCP001_MCF7_6H MCF7 6H C23 BRD-K76205745-237-15-7 0.4621 1.00019696585997 DMSO 10 0.005 +LKCP001_MCF7_6H MCF7 6H C24 BRD-K76205745-237-15-7 0.04621 0.100019696585997 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H D01 BRD-K78485176-001-05-2 5.585851 10 DMSO 10 0.056 +LKCP001_MCF7_6H MCF7 6H D02 BRD-K78485176-001-05-2 0.5585851 1 DMSO 10 0.006 +LKCP001_MCF7_6H MCF7 6H D03 BRD-K78485176-001-05-2 0.05585851 0.1 DMSO 10 0.001 +LKCP001_MCF7_6H MCF7 6H D04 BRD-K72414522-001-04-2 3.71457 10 DMSO 10 0.037 +LKCP001_MCF7_6H MCF7 6H D05 BRD-K72414522-001-04-2 0.371457 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H D06 BRD-K72414522-001-04-2 0.0371457 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H D07 BRD-K52751261-001-04-6 3.99508 10 DMSO 10 0.04 +LKCP001_MCF7_6H MCF7 6H D08 BRD-K52751261-001-04-6 0.399508 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H D09 BRD-K52751261-001-04-6 0.0399508 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H D10 BRD-K92723993-001-12-5 4.936027 10 DMSO 10 0.049 +LKCP001_MCF7_6H MCF7 6H D11 BRD-K92723993-001-12-5 0.4936027 1 DMSO 10 0.005 +LKCP001_MCF7_6H MCF7 6H D12 BRD-K92723993-001-12-5 0.04936027 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H D13 BRD-K09951645-001-11-8 5.19562 10 DMSO 10 0.052 +LKCP001_MCF7_6H MCF7 6H D14 BRD-K09951645-001-11-8 0.519562 1 DMSO 10 0.005 +LKCP001_MCF7_6H MCF7 6H D15 BRD-K09951645-001-11-8 0.0519562 0.1 DMSO 10 0.001 +LKCP001_MCF7_6H MCF7 6H D16 BRD-K60866521-001-06-3 4.15423 10 DMSO 10 0.042 +LKCP001_MCF7_6H MCF7 6H D17 BRD-K60866521-001-06-3 0.415423 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H D18 BRD-K60866521-001-06-3 0.0415423 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H D19 BRD-A78723049-001-01-2 5.75619 10 DMSO 10 0.058 +LKCP001_MCF7_6H MCF7 6H D20 BRD-A78723049-001-01-2 0.575619 1 DMSO 10 0.006 +LKCP001_MCF7_6H MCF7 6H D21 BRD-A78723049-001-01-2 0.0575619 0.1 DMSO 10 0.001 +LKCP001_MCF7_6H MCF7 6H D22 BRD-K61397605-001-03-4 5.40696 10 DMSO 10 0.054 +LKCP001_MCF7_6H MCF7 6H D23 BRD-K61397605-001-03-4 0.540696 1 DMSO 10 0.005 +LKCP001_MCF7_6H MCF7 6H D24 BRD-K61397605-001-03-4 0.0540696 0.1 DMSO 10 0.001 +LKCP001_MCF7_6H MCF7 6H E01 BRD-A79768653-001-13-8 9.141719 10 DMSO 10 0.091 +LKCP001_MCF7_6H MCF7 6H E02 BRD-A79768653-001-13-8 0.9141719 1 DMSO 10 0.009 +LKCP001_MCF7_6H MCF7 6H E03 BRD-A79768653-001-13-8 0.09141719 0.1 DMSO 10 0.001 +LKCP001_MCF7_6H MCF7 6H E04 BRD-K84683831-001-01-0 4.384548 10 DMSO 10 0.044 +LKCP001_MCF7_6H MCF7 6H E05 BRD-K84683831-001-01-0 0.4384548 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H E06 BRD-K84683831-001-01-0 0.04384548 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H E07 BRD-K83837640-001-04-8 3.944701 10 DMSO 10 0.039 +LKCP001_MCF7_6H MCF7 6H E08 BRD-K83837640-001-04-8 0.3944701 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H E09 BRD-K83837640-001-04-8 0.03944701 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H E10 BRD-K17894950-001-13-5 2.622628 10 DMSO 10 0.026 +LKCP001_MCF7_6H MCF7 6H E11 BRD-K17894950-001-13-5 0.2622628 1 DMSO 10 0.003 +LKCP001_MCF7_6H MCF7 6H E12 BRD-K17894950-001-13-5 0.02622628 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H E13 BRD-K84091759-001-05-5 4.40454 10 DMSO 10 0.044 +LKCP001_MCF7_6H MCF7 6H E14 BRD-K84091759-001-05-5 0.440454 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H E15 BRD-K84091759-001-05-5 0.0440454 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H E16 BRD-K08832567-001-10-7 2.722528 10 DMSO 10 0.027 +LKCP001_MCF7_6H MCF7 6H E17 BRD-K08832567-001-10-7 0.2722528 1 DMSO 10 0.003 +LKCP001_MCF7_6H MCF7 6H E18 BRD-K08832567-001-10-7 0.02722528 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H E19 BRD-K28731095-001-01-7 2.0831825 5 DMSO 10 0.021 +LKCP001_MCF7_6H MCF7 6H E20 BRD-K28731095-001-01-7 0.20831825 0.5 DMSO 10 0.002 +LKCP001_MCF7_6H MCF7 6H E21 BRD-K28731095-001-01-7 0.020831825000000002 0.05 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H E22 BRD-K33732501-004-01-0 4.37347 10 DMSO 10 0.044 +LKCP001_MCF7_6H MCF7 6H E23 BRD-K33732501-004-01-0 0.437347 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H E24 BRD-K33732501-004-01-0 0.0437347 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H F01 BRD-K87909389-001-03-8 4.0184 10 DMSO 10 0.04 +LKCP001_MCF7_6H MCF7 6H F02 BRD-K87909389-001-03-8 0.40184 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H F03 BRD-K87909389-001-03-8 0.040184 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H F04 BRD-K85751432-001-03-3 5.72337 10 DMSO 10 0.057 +LKCP001_MCF7_6H MCF7 6H F05 BRD-K85751432-001-03-3 0.572337 1 DMSO 10 0.006 +LKCP001_MCF7_6H MCF7 6H F06 BRD-K85751432-001-03-3 0.0572337 0.1 DMSO 10 0.001 +LKCP001_MCF7_6H MCF7 6H F07 BRD-K84163249-001-02-7 4.286472 10 DMSO 10 0.043 +LKCP001_MCF7_6H MCF7 6H F08 BRD-K84163249-001-02-7 0.4286472 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H F09 BRD-K84163249-001-02-7 0.04286472 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H F10 BRD-K13390322-001-04-8 3.82244 10 DMSO 10 0.038 +LKCP001_MCF7_6H MCF7 6H F11 BRD-K13390322-001-04-8 0.382244 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H F12 BRD-K13390322-001-04-8 0.0382244 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H F13 BRD-K64800655-001-02-5 3.614817 10 DMSO 10 0.036 +LKCP001_MCF7_6H MCF7 6H F14 BRD-K64800655-001-02-5 0.3614817 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H F15 BRD-K64800655-001-02-5 0.03614817 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H F16 BRD-K49807096-003-13-0 4.6095 10 DMSO 10 0.046 +LKCP001_MCF7_6H MCF7 6H F17 BRD-K49807096-003-13-0 0.46095 1 DMSO 10 0.005 +LKCP001_MCF7_6H MCF7 6H F18 BRD-K49807096-003-13-0 0.046095 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H F19 BRD-A27376179-001-01-3 2.197313 5 DMSO 10 0.022 +LKCP001_MCF7_6H MCF7 6H F20 BRD-A27376179-001-01-3 0.2197313 0.5 DMSO 10 0.002 +LKCP001_MCF7_6H MCF7 6H F21 BRD-A27376179-001-01-3 0.02197313 0.05 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H F22 BRD-K76197012-001-01-2 4.756191 10 DMSO 10 0.048 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0 +LKCP001_MCF7_6H MCF7 6H H16 BRD-K12867552-001-04-7 3.974244 10 DMSO 10 0.04 +LKCP001_MCF7_6H MCF7 6H H17 BRD-K12867552-001-04-7 0.3974244 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H H18 BRD-K12867552-001-04-7 0.03974244 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H H19 BRD-K93754473-001-06-0 3.7151456 10 DMSO 10 0.037 +LKCP001_MCF7_6H MCF7 6H H20 BRD-K93754473-001-06-0 0.37151456 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H H21 BRD-K93754473-001-06-0 0.037151456 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H H22 BRD-K29950728-048-18-2 5.98083 10 DMSO 10 0.06 +LKCP001_MCF7_6H MCF7 6H H23 BRD-K29950728-048-18-2 0.598083 1 DMSO 10 0.006 +LKCP001_MCF7_6H MCF7 6H H24 BRD-K29950728-048-18-2 0.0598083 0.1 DMSO 10 0.001 +LKCP001_MCF7_6H MCF7 6H I01 BRD-K69726595-001-01-2 3.994139 10 DMSO 10 0.04 +LKCP001_MCF7_6H MCF7 6H I02 BRD-K69726595-001-01-2 0.3994139 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H I03 BRD-K69726595-001-01-2 0.03994139 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H I04 BRD-A78195072-001-06-2 1.11102 10 DMSO 10 0.011 +LKCP001_MCF7_6H MCF7 6H I05 BRD-A78195072-001-06-2 0.111102 1 DMSO 10 0.001 +LKCP001_MCF7_6H MCF7 6H I06 BRD-A78195072-001-06-2 0.0111102 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H I07 BRD-K66538826-001-05-6 4.4751 10 DMSO 10 0.045 +LKCP001_MCF7_6H MCF7 6H I08 BRD-K66538826-001-05-6 0.44751 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H I09 BRD-K66538826-001-05-6 0.044751 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H I10 BRD-K09078998-001-01-4 9.902061 10 DMSO 10 0.099 +LKCP001_MCF7_6H MCF7 6H I11 BRD-K09078998-001-01-4 0.9902061 1 DMSO 10 0.01 +LKCP001_MCF7_6H MCF7 6H I12 BRD-K09078998-001-01-4 0.09902061 0.1 DMSO 10 0.001 +LKCP001_MCF7_6H MCF7 6H I13 BRD-K56957086-001-05-5 3.794522 10 DMSO 10 0.038 +LKCP001_MCF7_6H MCF7 6H I14 BRD-K56957086-001-05-5 0.3794522 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H I15 BRD-K56957086-001-05-5 0.03794522 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H I16 BRD-K56343971-001-12-2 4.89922 10 DMSO 10 0.049 +LKCP001_MCF7_6H MCF7 6H I17 BRD-K56343971-001-12-2 0.489922 1 DMSO 10 0.005 +LKCP001_MCF7_6H MCF7 6H I18 BRD-K56343971-001-12-2 0.0489922 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H I19 BRD-A87130939-001-07-9 3.023649 10 DMSO 10 0.03 +LKCP001_MCF7_6H MCF7 6H I20 BRD-A87130939-001-07-9 0.3023649 1 DMSO 10 0.003 +LKCP001_MCF7_6H MCF7 6H I21 BRD-A87130939-001-07-9 0.03023649 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H I22 BRD-K48068743-001-01-6 4.26578 10 DMSO 10 0.043 +LKCP001_MCF7_6H MCF7 6H I23 BRD-K48068743-001-01-6 0.426578 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H I24 BRD-K48068743-001-01-6 0.0426578 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H J01 BRD-K68870568-066-01-5 6.58694 10 DMSO 10 0.066 +LKCP001_MCF7_6H MCF7 6H J02 BRD-K68870568-066-01-5 0.658694 1 DMSO 10 0.007 +LKCP001_MCF7_6H MCF7 6H J03 BRD-K68870568-066-01-5 0.0658694 0.1 DMSO 10 0.001 +LKCP001_MCF7_6H MCF7 6H J04 BRD-K68065987-300-02-6 4.80389 10 DMSO 10 0.048 +LKCP001_MCF7_6H MCF7 6H J05 BRD-K68065987-300-02-6 0.480389 1 DMSO 10 0.005 +LKCP001_MCF7_6H MCF7 6H J06 BRD-K68065987-300-02-6 0.0480389 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H J07 BRD-K59325863-001-03-6 4.059648761 9.82311720041135 DMSO 10 0.041 +LKCP001_MCF7_6H MCF7 6H J08 BRD-K59325863-001-03-6 0.405964876 0.982311719799165 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H J09 BRD-K59325863-001-03-6 0.040596488 0.0982311729477951 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H J10 BRD-K57080016-001-19-1 4.57681 10 DMSO 10 0.046 +LKCP001_MCF7_6H MCF7 6H J11 BRD-K57080016-001-19-1 0.457681 1 DMSO 10 0.005 +LKCP001_MCF7_6H MCF7 6H J12 BRD-K57080016-001-19-1 0.0457681 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H J13 BRD-K49865102-001-01-9 4.82193 10 DMSO 10 0.048 +LKCP001_MCF7_6H MCF7 6H J14 BRD-K49865102-001-01-9 0.482193 1 DMSO 10 0.005 +LKCP001_MCF7_6H MCF7 6H J15 BRD-K49865102-001-01-9 0.0482193 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H J16 BRD-A03249105-001-01-9 6.06771 10 DMSO 10 0.061 +LKCP001_MCF7_6H MCF7 6H J17 BRD-A03249105-001-01-9 0.606771 1 DMSO 10 0.006 +LKCP001_MCF7_6H MCF7 6H J18 BRD-A03249105-001-01-9 0.0606771 0.1 DMSO 10 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0 +LKCP001_MCF7_6H MCF7 6H K08 NA NA NA DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H K09 NA NA NA DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H K10 NA NA NA DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H K11 NA NA NA DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H K12 NA NA NA DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H K13 BRD-K13662825-001-02-6 3.96486 10 DMSO 10 0.04 +LKCP001_MCF7_6H MCF7 6H K14 BRD-K13662825-001-02-6 0.396486 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H K15 BRD-K13662825-001-02-6 0.0396486 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H K16 BRD-K45542189-048-15-5 3.914168 10 DMSO 10 0.039 +LKCP001_MCF7_6H MCF7 6H K17 BRD-K45542189-048-15-5 0.3914168 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H K18 BRD-K45542189-048-15-5 0.03914168 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H K19 BRD-K05619559-001-12-7 4.675145 10 DMSO 10 0.047 +LKCP001_MCF7_6H MCF7 6H K20 BRD-K05619559-001-12-7 0.4675145 1 DMSO 10 0.005 +LKCP001_MCF7_6H MCF7 6H K21 BRD-K05619559-001-12-7 0.04675145 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H K22 BRD-A06935312-001-03-5 5.167092 10 DMSO 10 0.052 +LKCP001_MCF7_6H MCF7 6H K23 BRD-A06935312-001-03-5 0.5167092 1 DMSO 10 0.005 +LKCP001_MCF7_6H MCF7 6H K24 BRD-A06935312-001-03-5 0.05167092 0.1 DMSO 10 0.001 +LKCP001_MCF7_6H MCF7 6H L01 BRD-K56195681-001-01-0 3.834591 10 DMSO 10 0.038 +LKCP001_MCF7_6H MCF7 6H L02 BRD-K56195681-001-01-0 0.3834591 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H L03 BRD-K56195681-001-01-0 0.03834591 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H L04 BRD-K42417338-045-01-9 4.775473 10 DMSO 10 0.048 +LKCP001_MCF7_6H MCF7 6H L05 BRD-K42417338-045-01-9 0.4775473 1 DMSO 10 0.005 +LKCP001_MCF7_6H MCF7 6H L06 BRD-K42417338-045-01-9 0.04775473 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H L07 BRD-A08545410-311-03-4 4.98911 10 DMSO 10 0.05 +LKCP001_MCF7_6H MCF7 6H L08 BRD-A08545410-311-03-4 0.498911 1 DMSO 10 0.005 +LKCP001_MCF7_6H MCF7 6H L09 BRD-A08545410-311-03-4 0.0498911 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H L10 BRD-K49328571-001-27-5 4.88006 10 DMSO 10 0.049 +LKCP001_MCF7_6H MCF7 6H L11 BRD-K49328571-001-27-5 0.488006 1 DMSO 10 0.005 +LKCP001_MCF7_6H MCF7 6H L12 BRD-K49328571-001-27-5 0.0488006 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H L13 BRD-K47554101-001-01-2 3.943974 10 DMSO 10 0.039 +LKCP001_MCF7_6H MCF7 6H L14 BRD-K47554101-001-01-2 0.3943974 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H L15 BRD-K47554101-001-01-2 0.03943974 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H L16 BRD-K44844162-001-01-6 4.605315 10 DMSO 10 0.046 +LKCP001_MCF7_6H MCF7 6H L17 BRD-K44844162-001-01-6 0.4605315 1 DMSO 10 0.005 +LKCP001_MCF7_6H MCF7 6H L18 BRD-K44844162-001-01-6 0.04605315 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H L19 BRD-A25619068-003-03-4 1.29867 5 DMSO 10 0.013 +LKCP001_MCF7_6H MCF7 6H L20 BRD-A25619068-003-03-4 0.129867 0.5 DMSO 10 0.001 +LKCP001_MCF7_6H MCF7 6H L21 BRD-A25619068-003-03-4 0.0129867 0.05 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H L22 BRD-K07857022-002-01-1 4.425479 10 DMSO 10 0.044 +LKCP001_MCF7_6H MCF7 6H L23 BRD-K07857022-002-01-1 0.4425479 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H L24 BRD-K07857022-002-01-1 0.04425479 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H M01 BRD-K35189033-001-30-3 3.124458 10 DMSO 10 0.031 +LKCP001_MCF7_6H MCF7 6H M02 BRD-K35189033-001-30-3 0.3124458 1 DMSO 10 0.003 +LKCP001_MCF7_6H MCF7 6H M03 BRD-K35189033-001-30-3 0.03124458 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H M04 BRD-K11717138-001-16-2 4.24083 10 DMSO 10 0.042 +LKCP001_MCF7_6H MCF7 6H M05 BRD-K11717138-001-16-2 0.424083 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H M06 BRD-K11717138-001-16-2 0.0424083 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H M07 BRD-K34022604-001-04-1 3.03677 10 DMSO 10 0.03 +LKCP001_MCF7_6H MCF7 6H M08 BRD-K34022604-001-04-1 0.303677 1 DMSO 10 0.003 +LKCP001_MCF7_6H MCF7 6H M09 BRD-K34022604-001-04-1 0.0303677 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H M10 BRD-K28822270-001-03-7 3.655683421 10.462596187805 DMSO 10 0.037 +LKCP001_MCF7_6H MCF7 6H M11 BRD-K28822270-001-03-7 0.365568342 1.0462596184943 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H M12 BRD-K28822270-001-03-7 0.036556834 0.104625961277028 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H M13 BRD-K17743125-001-07-6 3.18348 10 DMSO 10 0.032 +LKCP001_MCF7_6H MCF7 6H M14 BRD-K17743125-001-07-6 0.318348 1 DMSO 10 0.003 +LKCP001_MCF7_6H MCF7 6H M15 BRD-K17743125-001-07-6 0.0318348 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H M16 BRD-A31159102-003-13-0 3.457870696 10 DMSO 10 0.035 +LKCP001_MCF7_6H MCF7 6H M17 BRD-A31159102-003-13-0 0.34578707 1.00000000115678 DMSO 10 0.003 +LKCP001_MCF7_6H MCF7 6H M18 BRD-A31159102-003-13-0 0.034578707 0.100000000115678 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H M19 BRD-K77908580-001-05-4 3.764085 10 DMSO 10 0.038 +LKCP001_MCF7_6H MCF7 6H M20 BRD-K77908580-001-05-4 0.3764085 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H M21 BRD-K77908580-001-05-4 0.037640849999999997 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H M22 BRD-K74065929-001-08-0 5.294018927 10.0330648894775 DMSO 10 0.053 +LKCP001_MCF7_6H MCF7 6H M23 BRD-K74065929-001-08-0 0.529401893 1.0033064895163 DMSO 10 0.005 +LKCP001_MCF7_6H MCF7 6H M24 BRD-K74065929-001-08-0 0.052940189 0.100330648383079 DMSO 10 0.001 +LKCP001_MCF7_6H MCF7 6H N01 BRD-K36280065-001-01-1 3.123696 10 DMSO 10 0.031 +LKCP001_MCF7_6H MCF7 6H N02 BRD-K36280065-001-01-1 0.3123696 1 DMSO 10 0.003 +LKCP001_MCF7_6H MCF7 6H N03 BRD-K36280065-001-01-1 0.03123696 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H N04 BRD-K37991163-050-05-1 4.454375632 10 DMSO 10 0.045 +LKCP001_MCF7_6H MCF7 6H N05 BRD-K37991163-050-05-1 0.445437563 0.999999999551003 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H N06 BRD-K37991163-050-05-1 0.044543756 0.0999999992816053 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H N07 BRD-K31342827-001-10-4 4.124837 10 DMSO 10 0.041 +LKCP001_MCF7_6H MCF7 6H N08 BRD-K31342827-001-10-4 0.4124837 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H N09 BRD-K31342827-001-10-4 0.04124837 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H N10 BRD-K28456624-001-02-9 4.546844 10 DMSO 10 0.045 +LKCP001_MCF7_6H MCF7 6H N11 BRD-K28456624-001-02-9 0.4546844 1 DMSO 10 0.005 +LKCP001_MCF7_6H MCF7 6H N12 BRD-K28456624-001-02-9 0.04546844 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H N13 BRD-K17705806-003-05-1 4.47957 10 DMSO 10 0.045 +LKCP001_MCF7_6H MCF7 6H N14 BRD-K17705806-003-05-1 0.447957 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H N15 BRD-K17705806-003-05-1 0.0447957 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H N16 BRD-K17555800-001-01-9 5.13004 10 DMSO 10 0.051 +LKCP001_MCF7_6H MCF7 6H N17 BRD-K17555800-001-01-9 0.513004 1 DMSO 10 0.005 +LKCP001_MCF7_6H MCF7 6H N18 BRD-K17555800-001-01-9 0.0513004 0.1 DMSO 10 0.001 +LKCP001_MCF7_6H MCF7 6H N19 BRD-A26503646-001-14-1 3.024079 10 DMSO 10 0.03 +LKCP001_MCF7_6H MCF7 6H N20 BRD-A26503646-001-14-1 0.3024079 1 DMSO 10 0.003 +LKCP001_MCF7_6H MCF7 6H N21 BRD-A26503646-001-14-1 0.03024079 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H N22 BRD-K70301876-034-06-1 4.144268 10 DMSO 10 0.041 +LKCP001_MCF7_6H MCF7 6H N23 BRD-K70301876-034-06-1 0.4144268 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H N24 BRD-K70301876-034-06-1 0.04144268 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H O01 NA NA NA DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H O02 NA NA NA DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H O03 NA NA NA DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H O04 NA NA NA DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H O05 NA NA NA DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H O06 NA NA NA DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H O07 BRD-K97472745-001-01-8 3.084141 10 DMSO 10 0.031 +LKCP001_MCF7_6H MCF7 6H O08 BRD-K97472745-001-01-8 0.3084141 1 DMSO 10 0.003 +LKCP001_MCF7_6H MCF7 6H O09 BRD-K97472745-001-01-8 0.03084141 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H O10 BRD-K05104363-001-02-7 4.7866 10 DMSO 10 0.048 +LKCP001_MCF7_6H MCF7 6H O11 BRD-K05104363-001-02-7 0.47866 1 DMSO 10 0.005 +LKCP001_MCF7_6H MCF7 6H O12 BRD-K05104363-001-02-7 0.047866 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H O13 BRD-A73741725-001-01-0 2.964034 10 DMSO 10 0.03 +LKCP001_MCF7_6H MCF7 6H O14 BRD-A73741725-001-01-0 0.2964034 1 DMSO 10 0.003 +LKCP001_MCF7_6H MCF7 6H O15 BRD-A73741725-001-01-0 0.02964034 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H O16 BRD-A36331462-001-01-3 5.32609 10 DMSO 10 0.053 +LKCP001_MCF7_6H MCF7 6H O17 BRD-A36331462-001-01-3 0.532609 1 DMSO 10 0.005 +LKCP001_MCF7_6H MCF7 6H O18 BRD-A36331462-001-01-3 0.0532609 0.1 DMSO 10 0.001 +LKCP001_MCF7_6H MCF7 6H O19 BRD-K17075857-001-15-0 2.14048 10 DMSO 10 0.021 +LKCP001_MCF7_6H MCF7 6H O20 BRD-K17075857-001-15-0 0.214048 1 DMSO 10 0.002 +LKCP001_MCF7_6H MCF7 6H O21 BRD-K17075857-001-15-0 0.0214048 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H O22 BRD-K03390685-001-01-7 5.3131 10 DMSO 10 0.053 +LKCP001_MCF7_6H MCF7 6H O23 BRD-K03390685-001-01-7 0.53131 1 DMSO 10 0.005 +LKCP001_MCF7_6H MCF7 6H O24 BRD-K03390685-001-01-7 0.053131 0.1 DMSO 10 0.001 +LKCP001_MCF7_6H MCF7 6H P01 BRD-K16803204-001-01-6 4.25504 10 DMSO 10 0.043 +LKCP001_MCF7_6H MCF7 6H P02 BRD-K16803204-001-01-6 0.425504 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H P03 BRD-K16803204-001-01-6 0.0425504 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H P04 BRD-K04887706-001-10-7 5.516404 10 DMSO 10 0.055 +LKCP001_MCF7_6H MCF7 6H P05 BRD-K04887706-001-10-7 0.5516404 1 DMSO 10 0.006 +LKCP001_MCF7_6H MCF7 6H P06 BRD-K04887706-001-10-7 0.05516404 0.1 DMSO 10 0.001 +LKCP001_MCF7_6H MCF7 6H P07 BRD-K07572174-001-17-0 3.683799 10 DMSO 10 0.037 +LKCP001_MCF7_6H MCF7 6H P08 BRD-K07572174-001-17-0 0.3683799 1 DMSO 10 0.004 +LKCP001_MCF7_6H MCF7 6H P09 BRD-K07572174-001-17-0 0.03683799 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H P10 BRD-A92537424-001-03-9 3.374553 10 DMSO 10 0.034 +LKCP001_MCF7_6H MCF7 6H P11 BRD-A92537424-001-03-9 0.3374553 1 DMSO 10 0.003 +LKCP001_MCF7_6H MCF7 6H P12 BRD-A92537424-001-03-9 0.03374553 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H P13 BRD-A62025033-001-02-6 10.302871 10 DMSO 10 0.103 +LKCP001_MCF7_6H MCF7 6H P14 BRD-A62025033-001-02-6 1.0302871 1 DMSO 10 0.01 +LKCP001_MCF7_6H MCF7 6H P15 BRD-A62025033-001-02-6 0.10302871 0.1 DMSO 10 0.001 +LKCP001_MCF7_6H MCF7 6H P16 BRD-A30051119-315-02-2 7.8175948 10 DMSO 10 0.078 +LKCP001_MCF7_6H MCF7 6H P17 BRD-A30051119-315-02-2 0.78175948 1 DMSO 10 0.008 +LKCP001_MCF7_6H MCF7 6H P18 BRD-A30051119-315-02-2 0.078175948 0.1 DMSO 10 0.001 +LKCP001_MCF7_6H MCF7 6H P19 BRD-K16730910-001-02-4 4.82815 10 DMSO 10 0.048 +LKCP001_MCF7_6H MCF7 6H P20 BRD-K16730910-001-02-4 0.482815 1 DMSO 10 0.005 +LKCP001_MCF7_6H MCF7 6H P21 BRD-K16730910-001-02-4 0.0482815 0.1 DMSO 10 0 +LKCP001_MCF7_6H MCF7 6H P22 BRD-K49456274-001-01-9 5.41022 10 DMSO 10 0.054 +LKCP001_MCF7_6H MCF7 6H P23 BRD-K49456274-001-01-9 0.541022 1 DMSO 10 0.005 +LKCP001_MCF7_6H MCF7 6H P24 BRD-K49456274-001-01-9 0.0541022 0.1 DMSO 10 0.001 diff --git a/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP001_U2OS_24H.txt b/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP001_U2OS_24H.txt new file mode 100755 index 0000000..45ee225 --- /dev/null +++ b/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP001_U2OS_24H.txt @@ -0,0 +1,385 @@ +plate_map_name cell_line time_point well_position broad_sample mg_per_ml mmoles_per_liter solvent volume_ul amount_mg +LKCP001_U2OS_24H U2OS 24H A01 NA NA NA DMSO 10 0 +LKCP001_U2OS_24H U2OS 24H A02 NA NA NA DMSO 10 0 +LKCP001_U2OS_24H U2OS 24H A03 NA NA NA DMSO 10 0 +LKCP001_U2OS_24H U2OS 24H A04 BRD-K63828191-003-28-9 5.10044 10 DMSO 10 0.051 +LKCP001_U2OS_24H U2OS 24H A05 BRD-K63828191-003-28-9 0.510044 1 DMSO 10 0.005 +LKCP001_U2OS_24H U2OS 24H A06 BRD-K63828191-003-28-9 0.0510044 0.1 DMSO 10 0.001 +LKCP001_U2OS_24H U2OS 24H A07 BRD-K27182532-001-01-5 4.6884 10 DMSO 10 0.047 +LKCP001_U2OS_24H U2OS 24H A08 BRD-K27182532-001-01-5 0.46884 1 DMSO 10 0.005 +LKCP001_U2OS_24H U2OS 24H A09 BRD-K27182532-001-01-5 0.046884 0.1 DMSO 10 0 +LKCP001_U2OS_24H U2OS 24H A10 BRD-K67102207-236-04-4 1.871908 10 DMSO 10 0.019 +LKCP001_U2OS_24H U2OS 24H A11 BRD-K67102207-236-04-4 0.1871908 1 DMSO 10 0.002 +LKCP001_U2OS_24H U2OS 24H A12 BRD-K67102207-236-04-4 0.01871908 0.1 DMSO 10 0 +LKCP001_U2OS_24H U2OS 24H A13 BRD-K99792991-001-35-6 4.06904 10 DMSO 10 0.041 +LKCP001_U2OS_24H U2OS 24H A14 BRD-K99792991-001-35-6 0.406904 1 DMSO 10 0.004 +LKCP001_U2OS_24H U2OS 24H A15 BRD-K99792991-001-35-6 0.0406904 0.1 DMSO 10 0 +LKCP001_U2OS_24H U2OS 24H A16 BRD-K96550715-001-04-2 4.569857401 9.67079215570588 DMSO 10 0.046 +LKCP001_U2OS_24H U2OS 24H A17 BRD-K96550715-001-04-2 0.45698574 0.967079215358967 DMSO 10 0.005 +LKCP001_U2OS_24H U2OS 24H A18 BRD-K96550715-001-04-2 0.045698574 0.0967079215358967 DMSO 10 0 +LKCP001_U2OS_24H U2OS 24H A19 BRD-K51747290-001-15-6 0.760547 10 DMSO 10 0.008 +LKCP001_U2OS_24H U2OS 24H A20 BRD-K51747290-001-15-6 0.0760547 1 DMSO 10 0.001 +LKCP001_U2OS_24H U2OS 24H A21 BRD-K51747290-001-15-6 0.00760547 0.1 DMSO 10 0 +LKCP001_U2OS_24H U2OS 24H A22 BRD-K52313696-001-08-1 2.692985 10 DMSO 10 0.027 +LKCP001_U2OS_24H U2OS 24H A23 BRD-K52313696-001-08-1 0.2692985 1 DMSO 10 0.003 +LKCP001_U2OS_24H U2OS 24H A24 BRD-K52313696-001-08-1 0.02692985 0.1 DMSO 10 0 +LKCP001_U2OS_24H U2OS 24H B01 NA NA NA DMSO 10 0 +LKCP001_U2OS_24H U2OS 24H B02 NA NA NA DMSO 10 0 +LKCP001_U2OS_24H U2OS 24H B03 NA NA NA DMSO 10 0 +LKCP001_U2OS_24H U2OS 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P21 BRD-K16730910-001-02-4 0.0482815 0.1 DMSO 10 0 +LKCP001_U2OS_24H U2OS 24H P22 BRD-K49456274-001-01-9 5.41022 10 DMSO 10 0.054 +LKCP001_U2OS_24H U2OS 24H P23 BRD-K49456274-001-01-9 0.541022 1 DMSO 10 0.005 +LKCP001_U2OS_24H U2OS 24H P24 BRD-K49456274-001-01-9 0.0541022 0.1 DMSO 10 0.001 diff --git a/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP001_U2OS_48H.txt b/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP001_U2OS_48H.txt new file mode 100755 index 0000000..358cd5f --- /dev/null +++ b/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP001_U2OS_48H.txt @@ -0,0 +1,385 @@ +plate_map_name cell_line time_point well_position broad_sample mg_per_ml mmoles_per_liter solvent volume_ul amount_mg +LKCP001_U2OS_48H U2OS 48H A01 NA NA NA DMSO 10 0 +LKCP001_U2OS_48H U2OS 48H A02 NA NA NA DMSO 10 0 +LKCP001_U2OS_48H U2OS 48H A03 NA NA NA DMSO 10 0 +LKCP001_U2OS_48H U2OS 48H A04 BRD-K63828191-003-28-9 5.10044 10 DMSO 10 0.051 +LKCP001_U2OS_48H U2OS 48H A05 BRD-K63828191-003-28-9 0.510044 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0.0541022 0.1 DMSO 10 0.001 diff --git a/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP001_U2OS_6H.txt b/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP001_U2OS_6H.txt new file mode 100755 index 0000000..87630ce --- /dev/null +++ b/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP001_U2OS_6H.txt @@ -0,0 +1,385 @@ +plate_map_name cell_line time_point well_position broad_sample mg_per_ml mmoles_per_liter solvent volume_ul amount_mg +LKCP001_U2OS_6H U2OS 6H A01 NA NA NA DMSO 10 0 +LKCP001_U2OS_6H U2OS 6H A02 NA NA NA DMSO 10 0 +LKCP001_U2OS_6H U2OS 6H A03 NA NA NA DMSO 10 0 +LKCP001_U2OS_6H U2OS 6H A04 BRD-K63828191-003-28-9 5.10044 10 DMSO 10 0.051 +LKCP001_U2OS_6H U2OS 6H A05 BRD-K63828191-003-28-9 0.510044 1 DMSO 10 0.005 +LKCP001_U2OS_6H U2OS 6H A06 BRD-K63828191-003-28-9 0.0510044 0.1 DMSO 10 0.001 +LKCP001_U2OS_6H U2OS 6H A07 BRD-K27182532-001-01-5 4.6884 10 DMSO 10 0.047 +LKCP001_U2OS_6H U2OS 6H A08 BRD-K27182532-001-01-5 0.46884 1 DMSO 10 0.005 +LKCP001_U2OS_6H U2OS 6H A09 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a/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP002_A549_24H.txt b/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP002_A549_24H.txt new file mode 100755 index 0000000..570905b --- /dev/null +++ b/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP002_A549_24H.txt @@ -0,0 +1,385 @@ +plate_map_name cell_line time_point well_position broad_sample mg_per_ml mmoles_per_liter solvent volume_ul amount_mg +LKCP002_A549_24H A549 24H A01 NA NA NA DMSO 10 0 +LKCP002_A549_24H A549 24H A02 NA NA NA DMSO 10 0 +LKCP002_A549_24H A549 24H A03 NA NA NA DMSO 10 0 +LKCP002_A549_24H A549 24H A04 BRD-K94441233-001-15-5 1.95004916 4.99355632371872 DMSO 10 0.02 +LKCP002_A549_24H A549 24H A05 BRD-K94441233-001-15-5 0.195004916 0.499355632371872 DMSO 10 0.002 +LKCP002_A549_24H A549 24H A06 BRD-K94441233-001-15-5 0.019500492 0.0499355642614806 DMSO 10 0 +LKCP002_A549_24H A549 24H A07 BRD-K12184916-001-01-4 4.6953652 10 DMSO 10 0.047 +LKCP002_A549_24H A549 24H A08 BRD-K12184916-001-01-4 0.46953652 1 DMSO 10 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+LKCP002_A549_6H A549 6H P24 BRD-K87909389-001-03-8 0.040184 0.1 DMSO 10 0 diff --git a/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP002_MCF7_24H.txt b/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP002_MCF7_24H.txt new file mode 100755 index 0000000..266fc72 --- /dev/null +++ b/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP002_MCF7_24H.txt @@ -0,0 +1,385 @@ +plate_map_name cell_line time_point well_position broad_sample mg_per_ml mmoles_per_liter solvent volume_ul amount_mg +LKCP002_MCF7_24H MCF7 24H A01 NA NA NA DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H A02 NA NA NA DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H A03 NA NA NA DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H A04 BRD-K94441233-001-15-5 1.95004916 4.99355632371872 DMSO 10 0.02 +LKCP002_MCF7_24H MCF7 24H A05 BRD-K94441233-001-15-5 0.195004916 0.499355632371872 DMSO 10 0.002 +LKCP002_MCF7_24H MCF7 24H A06 BRD-K94441233-001-15-5 0.019500492 0.0499355642614806 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H A07 BRD-K12184916-001-01-4 4.6953652 10 DMSO 10 0.047 +LKCP002_MCF7_24H MCF7 24H A08 BRD-K12184916-001-01-4 0.46953652 1 DMSO 10 0.005 +LKCP002_MCF7_24H MCF7 24H A09 BRD-K12184916-001-01-4 0.046953652 0.1 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H A10 BRD-K07691486-001-10-6 3.544493 10 DMSO 10 0.035 +LKCP002_MCF7_24H MCF7 24H A11 BRD-K07691486-001-10-6 0.3544493 1 DMSO 10 0.004 +LKCP002_MCF7_24H MCF7 24H A12 BRD-K07691486-001-10-6 0.03544493 0.1 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H A13 BRD-K90382497-001-05-7 4.77456 10 DMSO 10 0.048 +LKCP002_MCF7_24H MCF7 24H A14 BRD-K90382497-001-05-7 0.477456 1 DMSO 10 0.005 +LKCP002_MCF7_24H MCF7 24H A15 BRD-K90382497-001-05-7 0.0477456 0.1 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H A16 BRD-K65781196-001-02-2 4.83951 10 DMSO 10 0.048 +LKCP002_MCF7_24H MCF7 24H A17 BRD-K65781196-001-02-2 0.483951 1 DMSO 10 0.005 +LKCP002_MCF7_24H MCF7 24H A18 BRD-K65781196-001-02-2 0.0483951 0.1 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H A19 BRD-K81709173-001-09-5 4.54959 10 DMSO 10 0.045 +LKCP002_MCF7_24H MCF7 24H A20 BRD-K81709173-001-09-5 0.454959 1 DMSO 10 0.005 +LKCP002_MCF7_24H MCF7 24H A21 BRD-K81709173-001-09-5 0.0454959 0.1 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H A22 BRD-K24593301-001-02-3 4.569857401 10.1790349906893 DMSO 10 0.046 +LKCP002_MCF7_24H MCF7 24H A23 BRD-K24593301-001-02-3 0.45698574 1.01790349884619 DMSO 10 0.005 +LKCP002_MCF7_24H MCF7 24H A24 BRD-K24593301-001-02-3 0.045698574 0.101790349884619 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H B01 NA NA NA DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H B02 NA NA NA DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H B03 NA NA NA DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H B04 BRD-K38985961-001-09-1 3.243737 10 DMSO 10 0.032 +LKCP002_MCF7_24H MCF7 24H B05 BRD-K38985961-001-09-1 0.3243737 1 DMSO 10 0.003 +LKCP002_MCF7_24H MCF7 24H B06 BRD-K38985961-001-09-1 0.03243737 0.1 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H B07 BRD-K82746043-001-03-7 9.746127096 9.99999999999999 DMSO 10 0.097 +LKCP002_MCF7_24H MCF7 24H B08 BRD-K82746043-001-03-7 0.97461271 1.00000000041042 DMSO 10 0.01 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MCF7 24H B21 BRD-K15567136-003-03-3 0.037584598 0.1 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H B22 BRD-A22380646-236-05-8 4.08375 10.0495865734816 DMSO 10 0.041 +LKCP002_MCF7_24H MCF7 24H B23 BRD-A22380646-236-05-8 0.408375 1.00495865734816 DMSO 10 0.004 +LKCP002_MCF7_24H MCF7 24H B24 BRD-A22380646-236-05-8 0.0408375 0.100495865734816 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H C01 BRD-K35483542-001-04-9 3.004351 10 DMSO 10 0.03 +LKCP002_MCF7_24H MCF7 24H C02 BRD-K35483542-001-04-9 0.3004351 1 DMSO 10 0.003 +LKCP002_MCF7_24H MCF7 24H C03 BRD-K35483542-001-04-9 0.03004351 0.1 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H C04 BRD-K70446295-001-01-7 3.834474037 10.0000835506183 DMSO 10 0.038 +LKCP002_MCF7_24H MCF7 24H C05 BRD-K70446295-001-01-7 0.383447404 1.00000835584421 DMSO 10 0.004 +LKCP002_MCF7_24H MCF7 24H C06 BRD-K70446295-001-01-7 0.03834474 0.100000834541245 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H C07 BRD-K79254416-001-13-5 2.282053 10 DMSO 10 0.023 +LKCP002_MCF7_24H MCF7 24H C08 BRD-K79254416-001-13-5 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BRD-K15574380-001-01-0 0.03593501 0.1 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H D22 BRD-K51318897-001-13-8 2.99348 10 DMSO 10 0.03 +LKCP002_MCF7_24H MCF7 24H D23 BRD-K51318897-001-13-8 0.299348 1 DMSO 10 0.003 +LKCP002_MCF7_24H MCF7 24H D24 BRD-K51318897-001-13-8 0.0299348 0.1 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H E01 BRD-K33586289-003-02-8 4.790529069 9.99995630773084 DMSO 10 0.048 +LKCP002_MCF7_24H MCF7 24H E02 BRD-K33586289-003-02-8 0.47905290699999997 0.999995630981829 DMSO 10 0.005 +LKCP002_MCF7_24H MCF7 24H E03 BRD-K33586289-003-02-8 0.047905291 0.0999995637244158 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H E04 BRD-K89839824-001-04-6 4.58488 10 DMSO 10 0.046 +LKCP002_MCF7_24H MCF7 24H E05 BRD-K89839824-001-04-6 0.458488 1 DMSO 10 0.005 +LKCP002_MCF7_24H MCF7 24H E06 BRD-K89839824-001-04-6 0.0458488 0.1 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H E07 BRD-K45192137-001-01-1 3.924611 10 DMSO 10 0.039 +LKCP002_MCF7_24H MCF7 24H E08 BRD-K45192137-001-01-1 0.3924611 1 DMSO 10 0.004 +LKCP002_MCF7_24H MCF7 24H E09 BRD-K45192137-001-01-1 0.03924611 0.1 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H E10 BRD-A02367930-001-02-9 2.9640336 10 DMSO 10 0.03 +LKCP002_MCF7_24H MCF7 24H E11 BRD-A02367930-001-02-9 0.29640336 1 DMSO 10 0.003 +LKCP002_MCF7_24H MCF7 24H E12 BRD-A02367930-001-02-9 0.029640336 0.1 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H E13 BRD-K62014504-001-02-8 5.796887 10 DMSO 10 0.058 +LKCP002_MCF7_24H MCF7 24H E14 BRD-K62014504-001-02-8 0.5796887 1 DMSO 10 0.006 +LKCP002_MCF7_24H MCF7 24H E15 BRD-K62014504-001-02-8 0.05796887 0.1 DMSO 10 0.001 +LKCP002_MCF7_24H MCF7 24H E16 BRD-K33551950-001-01-6 3.64777 10 DMSO 10 0.036 +LKCP002_MCF7_24H MCF7 24H E17 BRD-K33551950-001-01-6 0.364777 1 DMSO 10 0.004 +LKCP002_MCF7_24H MCF7 24H E18 BRD-K33551950-001-01-6 0.0364777 0.1 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H E19 BRD-K92042497-001-01-4 3.104299 10 DMSO 10 0.031 +LKCP002_MCF7_24H MCF7 24H E20 BRD-K92042497-001-01-4 0.3104299 1 DMSO 10 0.003 +LKCP002_MCF7_24H MCF7 24H E21 BRD-K92042497-001-01-4 0.03104299 0.1 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H E22 BRD-A94993966-001-05-1 3.186852306 10.5038222105325 DMSO 10 0.032 +LKCP002_MCF7_24H MCF7 24H E23 BRD-A94993966-001-05-1 0.318685231 1.05038222237164 DMSO 10 0.003 +LKCP002_MCF7_24H MCF7 24H E24 BRD-A94993966-001-05-1 0.031868523 0.105038221907565 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H F01 BRD-A44780397-001-01-1 4.295937 10 DMSO 10 0.043 +LKCP002_MCF7_24H MCF7 24H F02 BRD-A44780397-001-01-1 0.4295937 1 DMSO 10 0.004 +LKCP002_MCF7_24H MCF7 24H F03 BRD-A44780397-001-01-1 0.04295937 0.1 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H F04 BRD-K77987382-001-06-6 2.9529272 10 DMSO 10 0.03 +LKCP002_MCF7_24H MCF7 24H F05 BRD-K77987382-001-06-6 0.29529272 1 DMSO 10 0.003 +LKCP002_MCF7_24H MCF7 24H F06 BRD-K77987382-001-06-6 0.029529272 0.1 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H F07 BRD-K99383816-001-01-9 2.001671 10 DMSO 10 0.02 +LKCP002_MCF7_24H MCF7 24H F08 BRD-K99383816-001-01-9 0.2001671 1 DMSO 10 0.002 +LKCP002_MCF7_24H MCF7 24H F09 BRD-K99383816-001-01-9 0.02001671 0.1 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H F10 BRD-A84465106-001-04-6 3.884144 10 DMSO 10 0.039 +LKCP002_MCF7_24H MCF7 24H F11 BRD-A84465106-001-04-6 0.3884144 1 DMSO 10 0.004 +LKCP002_MCF7_24H MCF7 24H F12 BRD-A84465106-001-04-6 0.03884144 0.1 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H F13 BRD-K74514084-001-02-1 4.37518 10 DMSO 10 0.044 +LKCP002_MCF7_24H MCF7 24H F14 BRD-K74514084-001-02-1 0.437518 1 DMSO 10 0.004 +LKCP002_MCF7_24H MCF7 24H F15 BRD-K74514084-001-02-1 0.0437518 0.1 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H F16 BRD-K64034691-001-01-9 4.655031329 9.99992766803471 DMSO 10 0.047 +LKCP002_MCF7_24H MCF7 24H F17 BRD-K64034691-001-01-9 0.465503133 0.999992767018291 DMSO 10 0.005 +LKCP002_MCF7_24H MCF7 24H F18 BRD-K64034691-001-01-9 0.046550313 0.0999992760573698 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H F19 BRD-K25630527-001-02-0 4.69942 10 DMSO 10 0.047 +LKCP002_MCF7_24H MCF7 24H F20 BRD-K25630527-001-02-0 0.469942 1 DMSO 10 0.005 +LKCP002_MCF7_24H MCF7 24H F21 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BRD-K19034817-001-04-8 0.047258346 0.100001007239641 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H G10 BRD-K62581435-001-02-0 4.194763 10 DMSO 10 0.042 +LKCP002_MCF7_24H MCF7 24H G11 BRD-K62581435-001-02-0 0.4194763 1 DMSO 10 0.004 +LKCP002_MCF7_24H MCF7 24H G12 BRD-K62581435-001-02-0 0.04194763 0.1 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H G13 NA NA NA DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H G14 NA NA NA DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H G15 NA NA NA DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H G16 NA NA NA DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H G17 NA NA NA DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H G18 NA NA NA DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H G19 BRD-K62734952-001-01-0 2.463016 10 DMSO 10 0.025 +LKCP002_MCF7_24H MCF7 24H G20 BRD-K62734952-001-01-0 0.2463016 1 DMSO 10 0.002 +LKCP002_MCF7_24H MCF7 24H G21 BRD-K62734952-001-01-0 0.02463016 0.1 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H G22 BRD-K29905972-001-10-5 3.8647 10 DMSO 10 0.039 +LKCP002_MCF7_24H MCF7 24H G23 BRD-K29905972-001-10-5 0.38647 1 DMSO 10 0.004 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10 0 +LKCP002_MCF7_24H MCF7 24H O19 BRD-K00521308-019-03-5 7.11668 10 DMSO 10 0.071 +LKCP002_MCF7_24H MCF7 24H O20 BRD-K00521308-019-03-5 0.711668 1 DMSO 10 0.007 +LKCP002_MCF7_24H MCF7 24H O21 BRD-K00521308-019-03-5 0.0711668 0.1 DMSO 10 0.001 +LKCP002_MCF7_24H MCF7 24H O22 BRD-K17513304-001-01-9 4.995032 10 DMSO 10 0.05 +LKCP002_MCF7_24H MCF7 24H O23 BRD-K17513304-001-01-9 0.4995032 1 DMSO 10 0.005 +LKCP002_MCF7_24H MCF7 24H O24 BRD-K17513304-001-01-9 0.04995032 0.1 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H P01 BRD-K71480163-001-01-4 4.57996 10 DMSO 10 0.046 +LKCP002_MCF7_24H MCF7 24H P02 BRD-K71480163-001-01-4 0.457996 1 DMSO 10 0.005 +LKCP002_MCF7_24H MCF7 24H P03 BRD-K71480163-001-01-4 0.0457996 0.1 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H P04 BRD-K15236393-001-01-1 2.703661 10 DMSO 10 0.027 +LKCP002_MCF7_24H MCF7 24H P05 BRD-K15236393-001-01-1 0.2703661 1 DMSO 10 0.003 +LKCP002_MCF7_24H MCF7 24H P06 BRD-K15236393-001-01-1 0.02703661 0.1 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H P07 BRD-K43586850-001-02-9 4.555433 10 DMSO 10 0.046 +LKCP002_MCF7_24H MCF7 24H P08 BRD-K43586850-001-02-9 0.4555433 1 DMSO 10 0.005 +LKCP002_MCF7_24H MCF7 24H P09 BRD-K43586850-001-02-9 0.04555433 0.1 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H P10 BRD-K60633875-001-01-0 2.72382 10 DMSO 10 0.027 +LKCP002_MCF7_24H MCF7 24H P11 BRD-K60633875-001-01-0 0.272382 1 DMSO 10 0.003 +LKCP002_MCF7_24H MCF7 24H P12 BRD-K60633875-001-01-0 0.0272382 0.1 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H P13 BRD-K35240538-001-25-4 3.744706 10 DMSO 10 0.037 +LKCP002_MCF7_24H MCF7 24H P14 BRD-K35240538-001-25-4 0.3744706 1 DMSO 10 0.004 +LKCP002_MCF7_24H MCF7 24H P15 BRD-K35240538-001-25-4 0.03744706 0.1 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H P16 BRD-K91966436-003-02-3 5.63981 10 DMSO 10 0.056 +LKCP002_MCF7_24H MCF7 24H P17 BRD-K91966436-003-02-3 0.563981 1 DMSO 10 0.006 +LKCP002_MCF7_24H MCF7 24H P18 BRD-K91966436-003-02-3 0.0563981 0.1 DMSO 10 0.001 +LKCP002_MCF7_24H MCF7 24H P19 BRD-K99749624-001-05-4 3.753989 10 DMSO 10 0.038 +LKCP002_MCF7_24H MCF7 24H P20 BRD-K99749624-001-05-4 0.3753989 1 DMSO 10 0.004 +LKCP002_MCF7_24H MCF7 24H P21 BRD-K99749624-001-05-4 0.03753989 0.1 DMSO 10 0 +LKCP002_MCF7_24H MCF7 24H P22 BRD-K87909389-001-03-8 4.0184 10 DMSO 10 0.04 +LKCP002_MCF7_24H MCF7 24H P23 BRD-K87909389-001-03-8 0.40184 1 DMSO 10 0.004 +LKCP002_MCF7_24H MCF7 24H P24 BRD-K87909389-001-03-8 0.040184 0.1 DMSO 10 0 diff --git a/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP002_MCF7_48H.txt b/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP002_MCF7_48H.txt new file mode 100755 index 0000000..7f93145 --- /dev/null +++ b/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP002_MCF7_48H.txt @@ -0,0 +1,385 @@ +plate_map_name cell_line time_point well_position broad_sample mg_per_ml mmoles_per_liter solvent volume_ul amount_mg +LKCP002_MCF7_48H MCF7 48H A01 NA NA NA DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H A02 NA NA NA DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H A03 NA NA NA DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H A04 BRD-K94441233-001-15-5 1.95004916 4.99355632371872 DMSO 10 0.02 +LKCP002_MCF7_48H MCF7 48H A05 BRD-K94441233-001-15-5 0.195004916 0.499355632371872 DMSO 10 0.002 +LKCP002_MCF7_48H MCF7 48H A06 BRD-K94441233-001-15-5 0.019500492 0.0499355642614806 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H A07 BRD-K12184916-001-01-4 4.6953652 10 DMSO 10 0.047 +LKCP002_MCF7_48H MCF7 48H A08 BRD-K12184916-001-01-4 0.46953652 1 DMSO 10 0.005 +LKCP002_MCF7_48H MCF7 48H A09 BRD-K12184916-001-01-4 0.046953652 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H A10 BRD-K07691486-001-10-6 3.544493 10 DMSO 10 0.035 +LKCP002_MCF7_48H MCF7 48H A11 BRD-K07691486-001-10-6 0.3544493 1 DMSO 10 0.004 +LKCP002_MCF7_48H MCF7 48H A12 BRD-K07691486-001-10-6 0.03544493 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H A13 BRD-K90382497-001-05-7 4.77456 10 DMSO 10 0.048 +LKCP002_MCF7_48H MCF7 48H A14 BRD-K90382497-001-05-7 0.477456 1 DMSO 10 0.005 +LKCP002_MCF7_48H MCF7 48H A15 BRD-K90382497-001-05-7 0.0477456 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H A16 BRD-K65781196-001-02-2 4.83951 10 DMSO 10 0.048 +LKCP002_MCF7_48H MCF7 48H A17 BRD-K65781196-001-02-2 0.483951 1 DMSO 10 0.005 +LKCP002_MCF7_48H MCF7 48H A18 BRD-K65781196-001-02-2 0.0483951 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H A19 BRD-K81709173-001-09-5 4.54959 10 DMSO 10 0.045 +LKCP002_MCF7_48H MCF7 48H A20 BRD-K81709173-001-09-5 0.454959 1 DMSO 10 0.005 +LKCP002_MCF7_48H MCF7 48H A21 BRD-K81709173-001-09-5 0.0454959 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H A22 BRD-K24593301-001-02-3 4.569857401 10.1790349906893 DMSO 10 0.046 +LKCP002_MCF7_48H MCF7 48H A23 BRD-K24593301-001-02-3 0.45698574 1.01790349884619 DMSO 10 0.005 +LKCP002_MCF7_48H MCF7 48H A24 BRD-K24593301-001-02-3 0.045698574 0.101790349884619 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H B01 NA NA NA DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H B02 NA NA NA DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H B03 NA NA NA DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H B04 BRD-K38985961-001-09-1 3.243737 10 DMSO 10 0.032 +LKCP002_MCF7_48H MCF7 48H B05 BRD-K38985961-001-09-1 0.3243737 1 DMSO 10 0.003 +LKCP002_MCF7_48H MCF7 48H B06 BRD-K38985961-001-09-1 0.03243737 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H B07 BRD-K82746043-001-03-7 9.746127096 9.99999999999999 DMSO 10 0.097 +LKCP002_MCF7_48H MCF7 48H B08 BRD-K82746043-001-03-7 0.97461271 1.00000000041042 DMSO 10 0.01 +LKCP002_MCF7_48H MCF7 48H B09 BRD-K82746043-001-03-7 0.097461271 0.100000000041042 DMSO 10 0.001 +LKCP002_MCF7_48H MCF7 48H B10 BRD-K63195589-001-02-2 4.89396 10 DMSO 10 0.049 +LKCP002_MCF7_48H MCF7 48H B11 BRD-K63195589-001-02-2 0.489396 1 DMSO 10 0.005 +LKCP002_MCF7_48H MCF7 48H B12 BRD-K63195589-001-02-2 0.0489396 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H B13 BRD-K95142244-001-01-5 1.9017545 5 DMSO 10 0.019 +LKCP002_MCF7_48H MCF7 48H B14 BRD-K95142244-001-01-5 0.19017545 0.5 DMSO 10 0.002 +LKCP002_MCF7_48H MCF7 48H B15 BRD-K95142244-001-01-5 0.019017545 0.05 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H B16 BRD-K83003151-001-01-4 3.393916 10 DMSO 10 0.034 +LKCP002_MCF7_48H MCF7 48H B17 BRD-K83003151-001-01-4 0.3393916 1 DMSO 10 0.003 +LKCP002_MCF7_48H MCF7 48H B18 BRD-K83003151-001-01-4 0.03393916 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H B19 BRD-K15567136-003-03-3 3.7584598 10 DMSO 10 0.038 +LKCP002_MCF7_48H MCF7 48H B20 BRD-K15567136-003-03-3 0.37584598 1 DMSO 10 0.004 +LKCP002_MCF7_48H MCF7 48H B21 BRD-K15567136-003-03-3 0.037584598 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H B22 BRD-A22380646-236-05-8 4.08375 10.0495865734816 DMSO 10 0.041 +LKCP002_MCF7_48H MCF7 48H B23 BRD-A22380646-236-05-8 0.408375 1.00495865734816 DMSO 10 0.004 +LKCP002_MCF7_48H MCF7 48H B24 BRD-A22380646-236-05-8 0.0408375 0.100495865734816 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H C01 BRD-K35483542-001-04-9 3.004351 10 DMSO 10 0.03 +LKCP002_MCF7_48H MCF7 48H C02 BRD-K35483542-001-04-9 0.3004351 1 DMSO 10 0.003 +LKCP002_MCF7_48H MCF7 48H C03 BRD-K35483542-001-04-9 0.03004351 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H C04 BRD-K70446295-001-01-7 3.834474037 10.0000835506183 DMSO 10 0.038 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C17 BRD-A13964793-001-02-6 0.2973666 1 DMSO 10 0.003 +LKCP002_MCF7_48H MCF7 48H C18 BRD-A13964793-001-02-6 0.02973666 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H C19 BRD-K92428232-001-08-0 5.434 9.99624726823202 DMSO 10 0.054 +LKCP002_MCF7_48H MCF7 48H C20 BRD-K92428232-001-08-0 0.5434 0.999624726823202 DMSO 10 0.005 +LKCP002_MCF7_48H MCF7 48H C21 BRD-K92428232-001-08-0 0.05434 0.0999624726823202 DMSO 10 0.001 +LKCP002_MCF7_48H MCF7 48H C22 BRD-K51544265-044-03-4 6.357 10.0016818936518 DMSO 10 0.064 +LKCP002_MCF7_48H MCF7 48H C23 BRD-K51544265-044-03-4 0.6357 1.00016818936518 DMSO 10 0.006 +LKCP002_MCF7_48H MCF7 48H C24 BRD-K51544265-044-03-4 0.06357 0.100016818936518 DMSO 10 0.001 +LKCP002_MCF7_48H MCF7 48H D01 BRD-K99741577-001-01-7 3.73494 10 DMSO 10 0.037 +LKCP002_MCF7_48H MCF7 48H D02 BRD-K99741577-001-01-7 0.373494 1 DMSO 10 0.004 +LKCP002_MCF7_48H MCF7 48H D03 BRD-K99741577-001-01-7 0.0373494 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H D04 BRD-K50498985-001-03-3 5.12502 10 DMSO 10 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BRD-A30655177-001-14-0 0.360001 1 DMSO 10 0.004 +LKCP002_MCF7_48H MCF7 48H D18 BRD-A30655177-001-14-0 0.0360001 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H D19 BRD-K15574380-001-01-0 3.593501 10 DMSO 10 0.036 +LKCP002_MCF7_48H MCF7 48H D20 BRD-K15574380-001-01-0 0.3593501 1 DMSO 10 0.004 +LKCP002_MCF7_48H MCF7 48H D21 BRD-K15574380-001-01-0 0.03593501 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H D22 BRD-K51318897-001-13-8 2.99348 10 DMSO 10 0.03 +LKCP002_MCF7_48H MCF7 48H D23 BRD-K51318897-001-13-8 0.299348 1 DMSO 10 0.003 +LKCP002_MCF7_48H MCF7 48H D24 BRD-K51318897-001-13-8 0.0299348 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H E01 BRD-K33586289-003-02-8 4.790529069 9.99995630773084 DMSO 10 0.048 +LKCP002_MCF7_48H MCF7 48H E02 BRD-K33586289-003-02-8 0.47905290699999997 0.999995630981829 DMSO 10 0.005 +LKCP002_MCF7_48H MCF7 48H E03 BRD-K33586289-003-02-8 0.047905291 0.0999995637244158 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H E04 BRD-K89839824-001-04-6 4.58488 10 DMSO 10 0.046 +LKCP002_MCF7_48H MCF7 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0.01300772 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H I22 BRD-K61468417-003-01-1 5.7998 10 DMSO 10 0.058 +LKCP002_MCF7_48H MCF7 48H I23 BRD-K61468417-003-01-1 0.57998 1 DMSO 10 0.006 +LKCP002_MCF7_48H MCF7 48H I24 BRD-K61468417-003-01-1 0.057998 0.1 DMSO 10 0.001 +LKCP002_MCF7_48H MCF7 48H J01 BRD-K95412502-003-01-5 3.96951 10 DMSO 10 0.04 +LKCP002_MCF7_48H MCF7 48H J02 BRD-K95412502-003-01-5 0.396951 1 DMSO 10 0.004 +LKCP002_MCF7_48H MCF7 48H J03 BRD-K95412502-003-01-5 0.0396951 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H J04 BRD-K33245965-001-03-4 4.735712514 10.0000623225837 DMSO 10 0.047 +LKCP002_MCF7_48H MCF7 48H J05 BRD-K33245965-001-03-4 0.473571251 1.00000623141372 DMSO 10 0.005 +LKCP002_MCF7_48H MCF7 48H J06 BRD-K33245965-001-03-4 0.047357125 0.100000622930209 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H J07 BRD-K88025533-003-01-7 3.43932 10 DMSO 10 0.034 +LKCP002_MCF7_48H MCF7 48H J08 BRD-K88025533-003-01-7 0.343932 1 DMSO 10 0.003 +LKCP002_MCF7_48H MCF7 48H J09 BRD-K88025533-003-01-7 0.0343932 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H J10 BRD-K53414658-001-08-2 4.54863 10 DMSO 10 0.045 +LKCP002_MCF7_48H MCF7 48H J11 BRD-K53414658-001-08-2 0.454863 1 DMSO 10 0.005 +LKCP002_MCF7_48H MCF7 48H J12 BRD-K53414658-001-08-2 0.0454863 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H J13 BRD-K87782578-001-01-4 4.234402 10 DMSO 10 0.042 +LKCP002_MCF7_48H MCF7 48H J14 BRD-K87782578-001-01-4 0.4234402 1 DMSO 10 0.004 +LKCP002_MCF7_48H MCF7 48H J15 BRD-K87782578-001-01-4 0.04234402 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H J16 BRD-K79131256-001-08-8 2.65331 10 DMSO 10 0.027 +LKCP002_MCF7_48H MCF7 48H J17 BRD-K79131256-001-08-8 0.265331 1 DMSO 10 0.003 +LKCP002_MCF7_48H MCF7 48H J18 BRD-K79131256-001-08-8 0.0265331 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H J19 BRD-K03243820-001-22-0 2.961999 10 DMSO 10 0.03 +LKCP002_MCF7_48H MCF7 48H J20 BRD-K03243820-001-22-0 0.2961999 1 DMSO 10 0.003 +LKCP002_MCF7_48H MCF7 48H J21 BRD-K03243820-001-22-0 0.02961999 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H 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BRD-K82941592-238-02-9 5.21616 10 DMSO 10 0.052 +LKCP002_MCF7_48H MCF7 48H L02 BRD-K82941592-238-02-9 0.521616 1 DMSO 10 0.005 +LKCP002_MCF7_48H MCF7 48H L03 BRD-K82941592-238-02-9 0.0521616 0.1 DMSO 10 0.001 +LKCP002_MCF7_48H MCF7 48H L04 BRD-K19796430-001-09-8 5.294018927 10.904304109532 DMSO 10 0.053 +LKCP002_MCF7_48H MCF7 48H L05 BRD-K19796430-001-09-8 0.529401893 1.09043041157113 DMSO 10 0.005 +LKCP002_MCF7_48H MCF7 48H L06 BRD-K19796430-001-09-8 0.052940189 0.109043040539191 DMSO 10 0.001 +LKCP002_MCF7_48H MCF7 48H L07 BRD-K20505391-001-01-4 2.873999 10 DMSO 10 0.029 +LKCP002_MCF7_48H MCF7 48H L08 BRD-K20505391-001-01-4 0.2873999 1 DMSO 10 0.003 +LKCP002_MCF7_48H MCF7 48H L09 BRD-K20505391-001-01-4 0.02873999 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H L10 BRD-K66296774-236-11-3 4.569857401 10.5185808380463 DMSO 10 0.046 +LKCP002_MCF7_48H MCF7 48H L11 BRD-K66296774-236-11-3 0.45698574 1.05185808357446 DMSO 10 0.005 +LKCP002_MCF7_48H MCF7 48H L12 BRD-K66296774-236-11-3 0.045698574 0.105185808357446 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H L13 BRD-K72827473-001-01-0 5.80121 10 DMSO 10 0.058 +LKCP002_MCF7_48H MCF7 48H L14 BRD-K72827473-001-01-0 0.580121 1 DMSO 10 0.006 +LKCP002_MCF7_48H MCF7 48H L15 BRD-K72827473-001-01-0 0.0580121 0.1 DMSO 10 0.001 +LKCP002_MCF7_48H MCF7 48H L16 BRD-K38003476-001-03-4 2 4.04021514443004 DMSO 10 0.02 +LKCP002_MCF7_48H MCF7 48H L17 BRD-K38003476-001-03-4 0.2 0.404021514443004 DMSO 10 0.002 +LKCP002_MCF7_48H MCF7 48H L18 BRD-K38003476-001-03-4 0.02 0.0404021514443004 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H L19 BRD-A64808605-003-01-9 3.7490428 10 DMSO 10 0.037 +LKCP002_MCF7_48H MCF7 48H L20 BRD-A64808605-003-01-9 0.37490428 1 DMSO 10 0.004 +LKCP002_MCF7_48H MCF7 48H L21 BRD-A64808605-003-01-9 0.037490428 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H L22 BRD-K59875992-001-01-8 2.653098 10 DMSO 10 0.027 +LKCP002_MCF7_48H MCF7 48H L23 BRD-K59875992-001-01-8 0.2653098 1 DMSO 10 0.003 +LKCP002_MCF7_48H MCF7 48H L24 BRD-K59875992-001-01-8 0.02653098 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H M01 BRD-K19295594-015-11-9 5.786064 10 DMSO 10 0.058 +LKCP002_MCF7_48H MCF7 48H M02 BRD-K19295594-015-11-9 0.5786064 1 DMSO 10 0.006 +LKCP002_MCF7_48H MCF7 48H M03 BRD-K19295594-015-11-9 0.05786064 0.1 DMSO 10 0.001 +LKCP002_MCF7_48H MCF7 48H M04 BRD-K63504947-001-16-2 2.382845 10 DMSO 10 0.024 +LKCP002_MCF7_48H MCF7 48H M05 BRD-K63504947-001-16-2 0.2382845 1 DMSO 10 0.002 +LKCP002_MCF7_48H MCF7 48H M06 BRD-K63504947-001-16-2 0.02382845 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H M07 BRD-K50168500-001-05-3 4.85938 10 DMSO 10 0.049 +LKCP002_MCF7_48H MCF7 48H M08 BRD-K50168500-001-05-3 0.485938 1 DMSO 10 0.005 +LKCP002_MCF7_48H MCF7 48H M09 BRD-K50168500-001-05-3 0.0485938 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H M10 BRD-K56032964-001-02-1 2.64507 5 DMSO 10 0.026 +LKCP002_MCF7_48H MCF7 48H M11 BRD-K56032964-001-02-1 0.264507 0.5 DMSO 10 0.003 +LKCP002_MCF7_48H MCF7 48H M12 BRD-K56032964-001-02-1 0.0264507 0.05 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H M13 BRD-K21152241-001-07-3 2.491218139 10.0330572128183 DMSO 10 0.025 +LKCP002_MCF7_48H MCF7 48H M14 BRD-K21152241-001-07-3 0.249121814 1.00330572168457 DMSO 10 0.002 +LKCP002_MCF7_48H MCF7 48H M15 BRD-K21152241-001-07-3 0.024912181 0.100330570557509 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H M16 BRD-K32842773-434-01-8 5.994971 10 DMSO 10 0.06 +LKCP002_MCF7_48H MCF7 48H M17 BRD-K32842773-434-01-8 0.5994971 1 DMSO 10 0.006 +LKCP002_MCF7_48H MCF7 48H M18 BRD-K32842773-434-01-8 0.05994971 0.1 DMSO 10 0.001 +LKCP002_MCF7_48H MCF7 48H M19 BRD-A94523291-304-01-9 4.864035 10 DMSO 10 0.049 +LKCP002_MCF7_48H MCF7 48H M20 BRD-A94523291-304-01-9 0.4864035 1 DMSO 10 0.005 +LKCP002_MCF7_48H MCF7 48H M21 BRD-A94523291-304-01-9 0.04864035 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H M22 BRD-A68281735-001-02-0 3.354394 10 DMSO 10 0.034 +LKCP002_MCF7_48H MCF7 48H M23 BRD-A68281735-001-02-0 0.3354394 1 DMSO 10 0.003 +LKCP002_MCF7_48H MCF7 48H M24 BRD-A68281735-001-02-0 0.03354394 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H N01 BRD-K07881437-001-04-6 4.569857401 9.62977805935163 DMSO 10 0.046 +LKCP002_MCF7_48H MCF7 48H N02 BRD-K07881437-001-04-6 0.45698574 0.962977805724439 DMSO 10 0.005 +LKCP002_MCF7_48H MCF7 48H N03 BRD-K07881437-001-04-6 0.045698574 0.0962977805724439 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H N04 BRD-K31447894-236-01-0 4.475175 10 DMSO 10 0.045 +LKCP002_MCF7_48H MCF7 48H N05 BRD-K31447894-236-01-0 0.4475175 1 DMSO 10 0.004 +LKCP002_MCF7_48H MCF7 48H N06 BRD-K31447894-236-01-0 0.04475175 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H N07 BRD-K86930074-001-05-0 4.505053 10 DMSO 10 0.045 +LKCP002_MCF7_48H MCF7 48H N08 BRD-K86930074-001-05-0 0.4505053 1 DMSO 10 0.005 +LKCP002_MCF7_48H MCF7 48H N09 BRD-K86930074-001-05-0 0.04505053 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H N10 BRD-K13646352-001-03-8 5.706371 10 DMSO 10 0.057 +LKCP002_MCF7_48H MCF7 48H N11 BRD-K13646352-001-03-8 0.5706371 1 DMSO 10 0.006 +LKCP002_MCF7_48H MCF7 48H N12 BRD-K13646352-001-03-8 0.05706371 0.1 DMSO 10 0.001 +LKCP002_MCF7_48H MCF7 48H N13 BRD-K57080016-001-19-1 4.57681 10 DMSO 10 0.046 +LKCP002_MCF7_48H MCF7 48H N14 BRD-K57080016-001-19-1 0.457681 1 DMSO 10 0.005 +LKCP002_MCF7_48H MCF7 48H N15 BRD-K57080016-001-19-1 0.0457681 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H N16 BRD-K12906202-001-06-2 1.911867 10 DMSO 10 0.019 +LKCP002_MCF7_48H MCF7 48H N17 BRD-K12906202-001-06-2 0.1911867 1 DMSO 10 0.002 +LKCP002_MCF7_48H MCF7 48H N18 BRD-K12906202-001-06-2 0.01911867 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H N19 BRD-K28731095-001-01-7 2.0831825 5 DMSO 10 0.021 +LKCP002_MCF7_48H MCF7 48H N20 BRD-K28731095-001-01-7 0.20831825 0.5 DMSO 10 0.002 +LKCP002_MCF7_48H MCF7 48H N21 BRD-K28731095-001-01-7 0.020831825000000002 0.05 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H N22 BRD-K08273968-001-16-6 3.52766 10 DMSO 10 0.035 +LKCP002_MCF7_48H MCF7 48H N23 BRD-K08273968-001-16-6 0.352766 1 DMSO 10 0.004 +LKCP002_MCF7_48H MCF7 48H N24 BRD-K08273968-001-16-6 0.0352766 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H O01 NA NA NA DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H O02 NA NA NA DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H O03 NA NA NA DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H O04 NA NA NA DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H O05 NA NA NA DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H O06 NA NA NA DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H O07 BRD-K33277808-001-01-2 5.846525 10 DMSO 10 0.058 +LKCP002_MCF7_48H MCF7 48H O08 BRD-K33277808-001-01-2 0.5846525 1 DMSO 10 0.006 +LKCP002_MCF7_48H MCF7 48H O09 BRD-K33277808-001-01-2 0.05846525 0.1 DMSO 10 0.001 +LKCP002_MCF7_48H MCF7 48H O10 BRD-K55026842-001-01-4 2.442047 10 DMSO 10 0.024 +LKCP002_MCF7_48H MCF7 48H O11 BRD-K55026842-001-01-4 0.2442047 1 DMSO 10 0.002 +LKCP002_MCF7_48H MCF7 48H O12 BRD-K55026842-001-01-4 0.02442047 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H O13 BRD-K76617868-003-14-3 0.65566 2 DMSO 10 0.007 +LKCP002_MCF7_48H MCF7 48H O14 BRD-K76617868-003-14-3 0.065566 0.2 DMSO 10 0.001 +LKCP002_MCF7_48H MCF7 48H O15 BRD-K76617868-003-14-3 0.0065566 0.02 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H O16 BRD-K94830213-001-01-3 4.03106118 10.5400226642346 DMSO 10 0.04 +LKCP002_MCF7_48H MCF7 48H O17 BRD-K94830213-001-01-3 0.403106118 1.05400226642346 DMSO 10 0.004 +LKCP002_MCF7_48H MCF7 48H O18 BRD-K94830213-001-01-3 0.040310612 0.105400227165287 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H O19 BRD-K00521308-019-03-5 7.11668 10 DMSO 10 0.071 +LKCP002_MCF7_48H MCF7 48H O20 BRD-K00521308-019-03-5 0.711668 1 DMSO 10 0.007 +LKCP002_MCF7_48H MCF7 48H O21 BRD-K00521308-019-03-5 0.0711668 0.1 DMSO 10 0.001 +LKCP002_MCF7_48H MCF7 48H O22 BRD-K17513304-001-01-9 4.995032 10 DMSO 10 0.05 +LKCP002_MCF7_48H MCF7 48H O23 BRD-K17513304-001-01-9 0.4995032 1 DMSO 10 0.005 +LKCP002_MCF7_48H MCF7 48H O24 BRD-K17513304-001-01-9 0.04995032 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H P01 BRD-K71480163-001-01-4 4.57996 10 DMSO 10 0.046 +LKCP002_MCF7_48H MCF7 48H P02 BRD-K71480163-001-01-4 0.457996 1 DMSO 10 0.005 +LKCP002_MCF7_48H MCF7 48H P03 BRD-K71480163-001-01-4 0.0457996 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H P04 BRD-K15236393-001-01-1 2.703661 10 DMSO 10 0.027 +LKCP002_MCF7_48H MCF7 48H P05 BRD-K15236393-001-01-1 0.2703661 1 DMSO 10 0.003 +LKCP002_MCF7_48H MCF7 48H P06 BRD-K15236393-001-01-1 0.02703661 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H P07 BRD-K43586850-001-02-9 4.555433 10 DMSO 10 0.046 +LKCP002_MCF7_48H MCF7 48H P08 BRD-K43586850-001-02-9 0.4555433 1 DMSO 10 0.005 +LKCP002_MCF7_48H MCF7 48H P09 BRD-K43586850-001-02-9 0.04555433 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H P10 BRD-K60633875-001-01-0 2.72382 10 DMSO 10 0.027 +LKCP002_MCF7_48H MCF7 48H P11 BRD-K60633875-001-01-0 0.272382 1 DMSO 10 0.003 +LKCP002_MCF7_48H MCF7 48H P12 BRD-K60633875-001-01-0 0.0272382 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H P13 BRD-K35240538-001-25-4 3.744706 10 DMSO 10 0.037 +LKCP002_MCF7_48H MCF7 48H P14 BRD-K35240538-001-25-4 0.3744706 1 DMSO 10 0.004 +LKCP002_MCF7_48H MCF7 48H P15 BRD-K35240538-001-25-4 0.03744706 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H P16 BRD-K91966436-003-02-3 5.63981 10 DMSO 10 0.056 +LKCP002_MCF7_48H MCF7 48H P17 BRD-K91966436-003-02-3 0.563981 1 DMSO 10 0.006 +LKCP002_MCF7_48H MCF7 48H P18 BRD-K91966436-003-02-3 0.0563981 0.1 DMSO 10 0.001 +LKCP002_MCF7_48H MCF7 48H P19 BRD-K99749624-001-05-4 3.753989 10 DMSO 10 0.038 +LKCP002_MCF7_48H MCF7 48H P20 BRD-K99749624-001-05-4 0.3753989 1 DMSO 10 0.004 +LKCP002_MCF7_48H MCF7 48H P21 BRD-K99749624-001-05-4 0.03753989 0.1 DMSO 10 0 +LKCP002_MCF7_48H MCF7 48H P22 BRD-K87909389-001-03-8 4.0184 10 DMSO 10 0.04 +LKCP002_MCF7_48H MCF7 48H P23 BRD-K87909389-001-03-8 0.40184 1 DMSO 10 0.004 +LKCP002_MCF7_48H MCF7 48H P24 BRD-K87909389-001-03-8 0.040184 0.1 DMSO 10 0 diff --git a/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP002_MCF7_6H.txt b/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP002_MCF7_6H.txt new file mode 100755 index 0000000..19885c5 --- /dev/null +++ b/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP002_MCF7_6H.txt @@ -0,0 +1,385 @@ +plate_map_name cell_line time_point well_position broad_sample mg_per_ml mmoles_per_liter solvent volume_ul amount_mg +LKCP002_MCF7_6H MCF7 6H A01 NA NA NA DMSO 10 0 +LKCP002_MCF7_6H MCF7 6H A02 NA NA NA DMSO 10 0 +LKCP002_MCF7_6H MCF7 6H A03 NA NA NA DMSO 10 0 +LKCP002_MCF7_6H MCF7 6H A04 BRD-K94441233-001-15-5 1.95004916 4.99355632371872 DMSO 10 0.02 +LKCP002_MCF7_6H MCF7 6H A05 BRD-K94441233-001-15-5 0.195004916 0.499355632371872 DMSO 10 0.002 +LKCP002_MCF7_6H MCF7 6H A06 BRD-K94441233-001-15-5 0.019500492 0.0499355642614806 DMSO 10 0 +LKCP002_MCF7_6H MCF7 6H A07 BRD-K12184916-001-01-4 4.6953652 10 DMSO 10 0.047 +LKCP002_MCF7_6H MCF7 6H A08 BRD-K12184916-001-01-4 0.46953652 1 DMSO 10 0.005 +LKCP002_MCF7_6H MCF7 6H A09 BRD-K12184916-001-01-4 0.046953652 0.1 DMSO 10 0 +LKCP002_MCF7_6H MCF7 6H A10 BRD-K07691486-001-10-6 3.544493 10 DMSO 10 0.035 +LKCP002_MCF7_6H MCF7 6H A11 BRD-K07691486-001-10-6 0.3544493 1 DMSO 10 0.004 +LKCP002_MCF7_6H MCF7 6H A12 BRD-K07691486-001-10-6 0.03544493 0.1 DMSO 10 0 +LKCP002_MCF7_6H MCF7 6H A13 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MCF7 6H I23 BRD-K61468417-003-01-1 0.57998 1 DMSO 10 0.006 +LKCP002_MCF7_6H MCF7 6H I24 BRD-K61468417-003-01-1 0.057998 0.1 DMSO 10 0.001 +LKCP002_MCF7_6H MCF7 6H J01 BRD-K95412502-003-01-5 3.96951 10 DMSO 10 0.04 +LKCP002_MCF7_6H MCF7 6H J02 BRD-K95412502-003-01-5 0.396951 1 DMSO 10 0.004 +LKCP002_MCF7_6H MCF7 6H J03 BRD-K95412502-003-01-5 0.0396951 0.1 DMSO 10 0 +LKCP002_MCF7_6H MCF7 6H J04 BRD-K33245965-001-03-4 4.735712514 10.0000623225837 DMSO 10 0.047 +LKCP002_MCF7_6H MCF7 6H J05 BRD-K33245965-001-03-4 0.473571251 1.00000623141372 DMSO 10 0.005 +LKCP002_MCF7_6H MCF7 6H J06 BRD-K33245965-001-03-4 0.047357125 0.100000622930209 DMSO 10 0 +LKCP002_MCF7_6H MCF7 6H J07 BRD-K88025533-003-01-7 3.43932 10 DMSO 10 0.034 +LKCP002_MCF7_6H MCF7 6H J08 BRD-K88025533-003-01-7 0.343932 1 DMSO 10 0.003 +LKCP002_MCF7_6H MCF7 6H J09 BRD-K88025533-003-01-7 0.0343932 0.1 DMSO 10 0 +LKCP002_MCF7_6H MCF7 6H J10 BRD-K53414658-001-08-2 4.54863 10 DMSO 10 0.045 +LKCP002_MCF7_6H MCF7 6H J11 BRD-K53414658-001-08-2 0.454863 1 DMSO 10 0.005 +LKCP002_MCF7_6H MCF7 6H J12 BRD-K53414658-001-08-2 0.0454863 0.1 DMSO 10 0 +LKCP002_MCF7_6H MCF7 6H J13 BRD-K87782578-001-01-4 4.234402 10 DMSO 10 0.042 +LKCP002_MCF7_6H MCF7 6H J14 BRD-K87782578-001-01-4 0.4234402 1 DMSO 10 0.004 +LKCP002_MCF7_6H MCF7 6H J15 BRD-K87782578-001-01-4 0.04234402 0.1 DMSO 10 0 +LKCP002_MCF7_6H MCF7 6H J16 BRD-K79131256-001-08-8 2.65331 10 DMSO 10 0.027 +LKCP002_MCF7_6H MCF7 6H J17 BRD-K79131256-001-08-8 0.265331 1 DMSO 10 0.003 +LKCP002_MCF7_6H MCF7 6H J18 BRD-K79131256-001-08-8 0.0265331 0.1 DMSO 10 0 +LKCP002_MCF7_6H MCF7 6H J19 BRD-K03243820-001-22-0 2.961999 10 DMSO 10 0.03 +LKCP002_MCF7_6H MCF7 6H J20 BRD-K03243820-001-22-0 0.2961999 1 DMSO 10 0.003 +LKCP002_MCF7_6H MCF7 6H J21 BRD-K03243820-001-22-0 0.02961999 0.1 DMSO 10 0 +LKCP002_MCF7_6H MCF7 6H J22 BRD-A02006392-001-16-4 3.603612 10 DMSO 10 0.036 +LKCP002_MCF7_6H MCF7 6H J23 BRD-A02006392-001-16-4 0.3603612 1 DMSO 10 0.004 +LKCP002_MCF7_6H MCF7 6H J24 BRD-A02006392-001-16-4 0.03603612 0.1 DMSO 10 0 +LKCP002_MCF7_6H MCF7 6H K01 BRD-A20527803-001-01-2 5.1028573 10 DMSO 10 0.051 +LKCP002_MCF7_6H MCF7 6H K02 BRD-A20527803-001-01-2 0.51028573 1 DMSO 10 0.005 +LKCP002_MCF7_6H MCF7 6H K03 BRD-A20527803-001-01-2 0.051028573 0.1 DMSO 10 0.001 +LKCP002_MCF7_6H MCF7 6H K04 BRD-K24576554-001-02-2 3.814316 10 DMSO 10 0.038 +LKCP002_MCF7_6H MCF7 6H K05 BRD-K24576554-001-02-2 0.3814316 1 DMSO 10 0.004 +LKCP002_MCF7_6H MCF7 6H K06 BRD-K24576554-001-02-2 0.03814316 0.1 DMSO 10 0 +LKCP002_MCF7_6H MCF7 6H K07 NA NA NA DMSO 10 0 +LKCP002_MCF7_6H MCF7 6H K08 NA NA NA DMSO 10 0 +LKCP002_MCF7_6H MCF7 6H K09 NA NA NA DMSO 10 0 +LKCP002_MCF7_6H MCF7 6H K10 NA NA NA DMSO 10 0 +LKCP002_MCF7_6H MCF7 6H K11 NA NA NA DMSO 10 0 +LKCP002_MCF7_6H MCF7 6H K12 NA NA NA DMSO 10 0 +LKCP002_MCF7_6H MCF7 6H K13 BRD-K18834913-001-01-1 5.55465 10 DMSO 10 0.056 +LKCP002_MCF7_6H MCF7 6H K14 BRD-K18834913-001-01-1 0.555465 1 DMSO 10 0.006 +LKCP002_MCF7_6H MCF7 6H K15 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100755 index 0000000..a3a8c5f --- /dev/null +++ b/metadata/platemaps/2017_12_05_Batch2/platemap/LKCP002_U2OS_6H.txt @@ -0,0 +1,385 @@ +plate_map_name cell_line time_point well_position broad_sample mg_per_ml mmoles_per_liter solvent volume_ul amount_mg +LKCP002_U2OS_6H U2OS 6H A01 NA NA NA DMSO 10 0 +LKCP002_U2OS_6H U2OS 6H A02 NA NA NA DMSO 10 0 +LKCP002_U2OS_6H U2OS 6H A03 NA NA NA DMSO 10 0 +LKCP002_U2OS_6H U2OS 6H A04 BRD-K94441233-001-15-5 1.95004916 4.99355632371872 DMSO 10 0.02 +LKCP002_U2OS_6H U2OS 6H A05 BRD-K94441233-001-15-5 0.195004916 0.499355632371872 DMSO 10 0.002 +LKCP002_U2OS_6H U2OS 6H A06 BRD-K94441233-001-15-5 0.019500492 0.0499355642614806 DMSO 10 0 +LKCP002_U2OS_6H U2OS 6H A07 BRD-K12184916-001-01-4 4.6953652 10 DMSO 10 0.047 +LKCP002_U2OS_6H U2OS 6H A08 BRD-K12184916-001-01-4 0.46953652 1 DMSO 10 0.005 +LKCP002_U2OS_6H U2OS 6H A09 BRD-K12184916-001-01-4 0.046953652 0.1 DMSO 10 0 +LKCP002_U2OS_6H U2OS 6H A10 BRD-K07691486-001-10-6 3.544493 10 DMSO 10 0.035 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0000000..6c12026 --- /dev/null +++ b/metadata/platemaps/2017_12_05_Batch2/platemap/MOA002_A549_6H.txt @@ -0,0 +1,385 @@ +plate_map_name cell_line time_point well_position broad_sample mg_per_ml mmoles_per_liter solvent volume_ul amount_mg +MOA002_A549_6H A549 6H A01 NA NA NA NA 0 0 +MOA002_A549_6H A549 6H A02 NA NA NA DMSO 8 0 +MOA002_A549_6H A549 6H A03 BRD-K15318909-001-02-2 1.852203 10 DMSO 8 0.015 +MOA002_A549_6H A549 6H A04 BRD-K15318909-001-02-2 0.617401 3.33333333333333 DMSO 8 0.005 +MOA002_A549_6H A549 6H A05 BRD-K78599730-001-02-6 1.37660655 2.5 DMSO 8 0.011 +MOA002_A549_6H A549 6H A06 BRD-K78599730-001-02-6 0.45886885 0.833333333333333 DMSO 8 0.004 +MOA002_A549_6H A549 6H A07 BRD-K71781559-001-03-3 3.173413 10 DMSO 8 0.025 +MOA002_A549_6H A549 6H A08 BRD-K71781559-001-03-3 1.057804333 3.33333333228294 DMSO 8 0.008 +MOA002_A549_6H A549 6H A09 BRD-M72045552-001-02-9 1.602157 10 DMSO 8 0.013 +MOA002_A549_6H A549 6H A10 BRD-M72045552-001-02-9 0.534052333 3.3333333312528 DMSO 8 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+MOA002_MCF7_24H MCF7 24H P15 BRD-K36055864-001-07-7 1.407 5.00093478738385 DMSO 8 0.011 +MOA002_MCF7_24H MCF7 24H P16 BRD-K36055864-001-07-7 1.407 5.00093478738385 DMSO 8 0.011 +MOA002_MCF7_24H MCF7 24H P17 NA NA NA DMSO 8 0 +MOA002_MCF7_24H MCF7 24H P18 NA NA NA DMSO 8 0 +MOA002_MCF7_24H MCF7 24H P19 NA NA NA DMSO 8 0 +MOA002_MCF7_24H MCF7 24H P20 NA NA NA DMSO 8 0 +MOA002_MCF7_24H MCF7 24H P21 NA NA NA DMSO 8 0 +MOA002_MCF7_24H MCF7 24H P22 NA NA NA DMSO 8 0 +MOA002_MCF7_24H MCF7 24H P23 NA NA NA NA 0 0 +MOA002_MCF7_24H MCF7 24H P24 NA NA NA DMSO 8 0 diff --git a/metadata/platemaps/2017_12_05_Batch2/platemap/MOA002_MCF7_48H.txt b/metadata/platemaps/2017_12_05_Batch2/platemap/MOA002_MCF7_48H.txt new file mode 100755 index 0000000..1d9dce0 --- /dev/null +++ b/metadata/platemaps/2017_12_05_Batch2/platemap/MOA002_MCF7_48H.txt @@ -0,0 +1,385 @@ +plate_map_name cell_line time_point well_position broad_sample mg_per_ml mmoles_per_liter solvent volume_ul amount_mg +MOA002_MCF7_48H MCF7 48H A01 NA NA NA NA 0 0 +MOA002_MCF7_48H MCF7 48H A02 NA NA NA DMSO 8 0 +MOA002_MCF7_48H MCF7 48H A03 BRD-K15318909-001-02-2 1.852203 10 DMSO 8 0.015 +MOA002_MCF7_48H MCF7 48H A04 BRD-K15318909-001-02-2 0.617401 3.33333333333333 DMSO 8 0.005 +MOA002_MCF7_48H MCF7 48H A05 BRD-K78599730-001-02-6 1.37660655 2.5 DMSO 8 0.011 +MOA002_MCF7_48H MCF7 48H A06 BRD-K78599730-001-02-6 0.45886885 0.833333333333333 DMSO 8 0.004 +MOA002_MCF7_48H MCF7 48H A07 BRD-K71781559-001-03-3 3.173413 10 DMSO 8 0.025 +MOA002_MCF7_48H MCF7 48H A08 BRD-K71781559-001-03-3 1.057804333 3.33333333228294 DMSO 8 0.008 +MOA002_MCF7_48H MCF7 48H A09 BRD-M72045552-001-02-9 1.602157 10 DMSO 8 0.013 +MOA002_MCF7_48H MCF7 48H A10 BRD-M72045552-001-02-9 0.534052333 3.3333333312528 DMSO 8 0.004 +MOA002_MCF7_48H MCF7 48H A11 BRD-K56411643-001-02-6 4.40876 10 DMSO 8 0.035 +MOA002_MCF7_48H MCF7 48H A12 BRD-K56411643-001-02-6 1.469586667 3.3333333340894 DMSO 8 0.012 +MOA002_MCF7_48H MCF7 48H A13 BRD-K97006656-001-01-1 3.333838 10 DMSO 8 0.027 +MOA002_MCF7_48H MCF7 48H A14 BRD-K97006656-001-01-1 1.111279333 3.33333333233348 DMSO 8 0.009 +MOA002_MCF7_48H MCF7 48H A15 BRD-K19875720-001-01-6 3.103041 10 DMSO 8 0.025 +MOA002_MCF7_48H MCF7 48H A16 BRD-K19875720-001-01-6 1.034347 3.33333333333333 DMSO 8 0.008 +MOA002_MCF7_48H MCF7 48H A17 BRD-K74995143-001-01-3 3.083312 10 DMSO 8 0.025 +MOA002_MCF7_48H MCF7 48H A18 BRD-K74995143-001-01-3 1.027770667 3.33333333441442 DMSO 8 0.008 +MOA002_MCF7_48H MCF7 48H A19 BRD-A52518985-001-01-2 3.584363 10 DMSO 8 0.029 +MOA002_MCF7_48H MCF7 48H A20 BRD-A52518985-001-01-2 1.194787667 3.3333333342633 DMSO 8 0.01 +MOA002_MCF7_48H MCF7 48H A21 BRD-K89475669-001-02-1 5.52617 10 DMSO 8 0.044 +MOA002_MCF7_48H MCF7 48H A22 BRD-K89475669-001-02-1 1.842056667 3.33333333393652 DMSO 8 0.015 +MOA002_MCF7_48H MCF7 48H A23 NA NA NA NA 0 0 +MOA002_MCF7_48H MCF7 48H A24 NA NA NA DMSO 8 0 +MOA002_MCF7_48H MCF7 48H B01 NA NA NA NA 0 0 +MOA002_MCF7_48H MCF7 48H B02 NA NA NA DMSO 8 0 +MOA002_MCF7_48H MCF7 48H B03 BRD-K15318909-001-02-2 0.205800333 1.11111110931145 DMSO 8 0.002 +MOA002_MCF7_48H MCF7 48H B04 BRD-K15318909-001-02-2 0.068600111 0.370370369770484 DMSO 8 0.001 +MOA002_MCF7_48H MCF7 48H B05 BRD-K78599730-001-02-6 0.152956283 0.277777777172425 DMSO 8 0.001 +MOA002_MCF7_48H MCF7 48H B06 BRD-K78599730-001-02-6 0.050985428 0.0925925929961615 DMSO 8 0 +MOA002_MCF7_48H MCF7 48H B07 BRD-K71781559-001-03-3 0.352601444 1.11111110971059 DMSO 8 0.003 +MOA002_MCF7_48H MCF7 48H B08 BRD-K71781559-001-03-3 0.117533815 0.370370370953923 DMSO 8 0.001 +MOA002_MCF7_48H MCF7 48H B09 BRD-M72045552-001-02-9 0.178017444 1.11111110833707 DMSO 8 0.001 +MOA002_MCF7_48H MCF7 48H B10 BRD-M72045552-001-02-9 0.059339148 0.370370369445691 DMSO 8 0 +MOA002_MCF7_48H MCF7 48H B11 BRD-K56411643-001-02-6 0.489862222 1.11111111060706 DMSO 8 0.004 +MOA002_MCF7_48H MCF7 48H B12 BRD-K56411643-001-02-6 0.163287407 0.370370369446284 DMSO 8 0.001 +MOA002_MCF7_48H MCF7 48H B13 BRD-K97006656-001-01-1 0.370426444 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DMSO 8 0 +MOA002_MCF7_48H MCF7 48H O01 NA NA NA NA 0 0 +MOA002_MCF7_48H MCF7 48H O02 NA NA NA DMSO 8 0 +MOA002_MCF7_48H MCF7 48H O03 BRD-K05649647-001-02-9 4.2747 10 DMSO 8 0.034 +MOA002_MCF7_48H MCF7 48H O04 BRD-K05649647-001-02-9 1.4249 3.33333333333333 DMSO 8 0.011 +MOA002_MCF7_48H MCF7 48H O05 BRD-K60230970-001-10-0 4.756208 10 DMSO 8 0.038 +MOA002_MCF7_48H MCF7 48H O06 BRD-K60230970-001-10-0 1.585402667 3.33333333403417 DMSO 8 0.013 +MOA002_MCF7_48H MCF7 48H O07 BRD-K38921908-001-01-9 5.987384 10 DMSO 8 0.048 +MOA002_MCF7_48H MCF7 48H O08 BRD-K38921908-001-01-9 1.995794667 3.33333333389006 DMSO 8 0.016 +MOA002_MCF7_48H MCF7 48H O09 BRD-K29965657-001-07-7 4.10893 10 DMSO 8 0.033 +MOA002_MCF7_48H MCF7 48H O10 BRD-K29965657-001-07-7 1.369643333 3.33333333252209 DMSO 8 0.011 +MOA002_MCF7_48H MCF7 48H O11 BRD-K79602928-003-10-8 1.65625 10 DMSO 8 0.013 +MOA002_MCF7_48H MCF7 48H O12 BRD-K79602928-003-10-8 0.552083333 3.33333333132075 DMSO 8 0.004 +MOA002_MCF7_48H MCF7 48H O13 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b/metadata/platemaps/2017_12_05_Batch2/platemap/MOA002_MCF7_6H.txt @@ -0,0 +1,385 @@ +plate_map_name cell_line time_point well_position broad_sample mg_per_ml mmoles_per_liter solvent volume_ul amount_mg +MOA002_MCF7_6H MCF7 6H A01 NA NA NA NA 0 0 +MOA002_MCF7_6H MCF7 6H A02 NA NA NA DMSO 8 0 +MOA002_MCF7_6H MCF7 6H A03 BRD-K15318909-001-02-2 1.852203 10 DMSO 8 0.015 +MOA002_MCF7_6H MCF7 6H A04 BRD-K15318909-001-02-2 0.617401 3.33333333333333 DMSO 8 0.005 +MOA002_MCF7_6H MCF7 6H A05 BRD-K78599730-001-02-6 1.37660655 2.5 DMSO 8 0.011 +MOA002_MCF7_6H MCF7 6H A06 BRD-K78599730-001-02-6 0.45886885 0.833333333333333 DMSO 8 0.004 +MOA002_MCF7_6H MCF7 6H A07 BRD-K71781559-001-03-3 3.173413 10 DMSO 8 0.025 +MOA002_MCF7_6H MCF7 6H A08 BRD-K71781559-001-03-3 1.057804333 3.33333333228294 DMSO 8 0.008 +MOA002_MCF7_6H MCF7 6H A09 BRD-M72045552-001-02-9 1.602157 10 DMSO 8 0.013 +MOA002_MCF7_6H MCF7 6H A10 BRD-M72045552-001-02-9 0.534052333 3.3333333312528 DMSO 8 0.004 +MOA002_MCF7_6H MCF7 6H A11 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b/metadata/platemaps/2017_12_05_Batch2/platemap/MOA002_U2OS_6H.txt @@ -0,0 +1,385 @@ +plate_map_name cell_line time_point well_position broad_sample mg_per_ml mmoles_per_liter solvent volume_ul amount_mg +MOA002_U2OS_6H U2OS 6H A01 NA NA NA NA 0 0 +MOA002_U2OS_6H U2OS 6H A02 NA NA NA DMSO 8 0 +MOA002_U2OS_6H U2OS 6H A03 BRD-K15318909-001-02-2 1.852203 10 DMSO 8 0.015 +MOA002_U2OS_6H U2OS 6H A04 BRD-K15318909-001-02-2 0.617401 3.33333333333333 DMSO 8 0.005 +MOA002_U2OS_6H U2OS 6H A05 BRD-K78599730-001-02-6 1.37660655 2.5 DMSO 8 0.011 +MOA002_U2OS_6H U2OS 6H A06 BRD-K78599730-001-02-6 0.45886885 0.833333333333333 DMSO 8 0.004 +MOA002_U2OS_6H U2OS 6H A07 BRD-K71781559-001-03-3 3.173413 10 DMSO 8 0.025 +MOA002_U2OS_6H U2OS 6H A08 BRD-K71781559-001-03-3 1.057804333 3.33333333228294 DMSO 8 0.008 +MOA002_U2OS_6H U2OS 6H A09 BRD-M72045552-001-02-9 1.602157 10 DMSO 8 0.013 +MOA002_U2OS_6H U2OS 6H A10 BRD-M72045552-001-02-9 0.534052333 3.3333333312528 DMSO 8 0.004 +MOA002_U2OS_6H U2OS 6H A11 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image-based readouts into more manageable data matrices for downstream analyses ([Caicedo et al. 2017](https://doi.org/10.1038/nmeth.4397)). -Typically, the image-based readouts are derived from CellProfiler ([McQuin et al. 2018](https://doi.org/10.1371/journal.pbio.2005970)) and represent single cell morphology measurements. -In this folder, we process the CellProfiler derived morphology features using [pycytominer](https://github.com/cytomining/pycytominer) - a tool enabling reproducible image-based profiling. +Typically, you derive image-based readouts using software, like CellProfiler ([McQuin et al. 2018](https://doi.org/10.1371/journal.pbio.2005970)), that segment cells and extract so-called hand-engineered single cell morphology measurements. +In this folder, we process the CellProfiler derived morphology features for the LINCS Cell Painting dataset using [pycytominer](https://github.com/cytomining/pycytominer) - a tool enabling reproducible image-based profiling. + Specifically, we include: 1. Data processing scripts to perform the full unified, image-based profiling pipeline @@ -11,34 +12,52 @@ Specifically, we include: ## Workflow -![Cytominer Workflow](media/cytominer_workflow.png) +![Cytominer workflow](media/cytominer_workflow.png) Note here that we do not include the intermediate step of generating `.sqlite` files per plate using a tool called [cytominer-database](https://github.com/cytomining/cytominer-database). This repository and workflow begins after we applied cytominer-database. ## Data Levels -### CellProfilier-derived Profiles +We include two batches of Cell Painting data in this repository: `2016_04_01_a549_48hr_batch1` and `2017_12_05_Batch2`. + +### CellProfilier-derived profiles -| Data Level | Description | File Format | Included in this Repo | +For each batch, we include: + +| Data level | Description | File format | Included in this repo? | | :--------- | :---------- | :---------- | :-------------------- | -| Level 1 | Cell Images | `.tif` | No^ | -| Level 2 | Single Cell Profiles | `.sqlite` | No^ | -| Level 3 | Aggregated Profiles with Metadata | `.csv.gz` | Yes | -| Level 4a | Normalized Profiles with Metadata | `.csv.gz` | Yes | -| Level 4b | Normalized and Feature Selected Profiles with Metadata | `.csv.gz` | Yes | -| Level 5 | Consensus Perturbation Profiles | `.csv.gz` | Yes | +| Level 1 | Cell images | `.tif` | No^ | +| Level 2 | Single cell profiles | `.sqlite` | No^ | +| Level 3 | Aggregated profiles with metadata | `.csv.gz` | Yes | +| Level 4a | Normalized profiles with metadata | `.csv.gz` | Yes | +| Level 4b | Normalized and feature selected profiles with metadata | `.csv.gz` | Yes | +| Level 5 | Consensus perturbation profiles | `.csv.gz` | Yes | Importantly, we include files for _two_ different types of normalization: Whole-plate normalization, and DMSO-specific normalization. -See [`profile.py`](profile.py) for more details. +See [`profile_cells.py`](profile_cells.py) for more details. + +#### Batch corrected profiles -^ Note that these files are being prepared +We use a spherize (a.k.a. whiten) transform to adjust for plate position effects. +The spherize transform adjusts for plate position effects by transforming the profile data such that the DMSO profiles are left with an identity covariance matrix. +See [`spherize-batch-effects.ipynb`](spherized_profiles/spherize-batch-effects.ipynb) for implementation details. -### DeepProfiler-derived Profiles +For each batch we include four different spherized profiles. +These data include all level 4b profiles for every batch. + +| Batch | Input data | Spherized output file | +| :---: | :--------: | :-------------------: | +| 2016_04_01_a549_48hr_batch1 | DMSO normalized | 2016_04_01_a549_48hr_batch1_dmso_spherized_profiles_with_input_normalized_by_dmso.csv.gz | +| 2016_04_01_a549_48hr_batch1 | Whole plate normalized | 2017_12_05_Batch2_dmso_spherized_profiles_with_input_normalized_by_whole_plate.csv.gz | +| 2017_12_05_Batch2 | DMSO normalized | 2017_12_05_Batch2_dmso_spherized_profiles_with_input_normalized_by_dmso.csv.gz | +| 2017_12_05_Batch2 | Whole plate normalized | 2017_12_05_Batch2_dmso_spherized_profiles_with_input_normalized_by_whole_plate.csv.gz | + +### DeepProfiler-derived profiles TBD -## Reproduce Pipeline +## Reproduce pipeline The pipeline can be reproduced by simply executing the following: @@ -48,9 +67,12 @@ conda activate lincs # Reproduce the entire image-based profiling pipeline for CellProfiler derived features python profiling_pipeline.py + +# Apply the same profiling pipeline to process batch 2 data +python profiling_pipeline.py --batch "2017_12_05_Batch2" --plate_prefix "BR" --well_col "Metadata_Well" --plate_col "Metadata_Plate" --extract_cell_line ``` -## Critical Details +## Critical details There are several critical details that are important for understanding data generation and processing. -See [`profile.py`](profile.py) for more details about the specific processing steps and decisions. +See [`profile_cells.py`](profile_cells.py) for more details about the specific processing steps and decisions. diff --git a/profiles/cell_count/2017_12_05_Batch2/BR00092655/BR00092655_cell_count.csv b/profiles/cell_count/2017_12_05_Batch2/BR00092655/BR00092655_cell_count.csv new file mode 100644 index 0000000..022e241 --- /dev/null +++ b/profiles/cell_count/2017_12_05_Batch2/BR00092655/BR00092655_cell_count.csv @@ -0,0 +1,385 @@ 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+BR00092789,P04,227 +BR00092789,P05,206 +BR00092789,P06,224 +BR00092789,P07,521 +BR00092789,P08,627 +BR00092789,P09,649 +BR00092789,P10,35 +BR00092789,P11,24 +BR00092789,P12,47 +BR00092789,P13,10 +BR00092789,P14,206 +BR00092789,P15,532 +BR00092789,P16,817 +BR00092789,P17,737 +BR00092789,P18,698 +BR00092789,P19,540 +BR00092789,P20,694 +BR00092789,P21,817 +BR00092789,P22,578 +BR00092789,P23,679 +BR00092789,P24,704 diff --git a/profiles/profile.py b/profiles/profile_cells.py similarity index 83% rename from profiles/profile.py rename to profiles/profile_cells.py index 42927af..13f5d82 100644 --- a/profiles/profile.py +++ b/profiles/profile_cells.py @@ -27,17 +27,20 @@ barcode_platemap_file = args.barcode_platemap_file moa_file = args.moa_file cell_count_dir = args.cell_count_dir +cell_id = args.cell_id output_dir = args.output_dir +plate_col = args.plate_col # Default is "Image_Metadata_Plate" +well_col = args.well_col # Default is "Image_Metadata_Well" # Initialize profile processing os.makedirs(output_dir, exist_ok=True) os.makedirs(cell_count_dir, exist_ok=True) -cell_id = "A549" + aggregate_method = "median" norm_method = "mad_robustize" compression = "gzip" float_format = "%.5g" -strata = ["Image_Metadata_Plate", "Image_Metadata_Well"] +strata = [plate_col, well_col] feature_select_ops = [ "drop_na_columns", "variance_threshold", @@ -70,7 +73,7 @@ anno_df = annotate( profiles=out_file, platemap=platemap_file, - join_on=["Metadata_well_position", "Image_Metadata_Well"], + join_on=["Metadata_well_position", well_col], cell_id=cell_id, format_broad_cmap=True, perturbation_mode="chemical", @@ -86,12 +89,18 @@ ) # Add barcode platemap info -anno_df = anno_df.assign( - Metadata_Assay_Plate_Barcode=barcode_platemap_df.Assay_Plate_Barcode.values[0], - Metadata_Plate_Map_Name=barcode_platemap_df.Plate_Map_Name.values[0], - Metadata_Batch_Number=barcode_platemap_df.Batch_Number.values[0], - Metadata_Batch_Date=barcode_platemap_df.Batch_Date.values[0], -) +try: + anno_df = anno_df.assign( + Metadata_Assay_Plate_Barcode=barcode_platemap_df.Assay_Plate_Barcode.values[0], + Metadata_Plate_Map_Name=barcode_platemap_df.Plate_Map_Name.values[0], + Metadata_Batch_Number=barcode_platemap_df.Batch_Number.values[0], + Metadata_Batch_Date=barcode_platemap_df.Batch_Date.values[0], + ) +except AttributeError: + anno_df = anno_df.assign( + Metadata_Assay_Plate_Barcode=barcode_platemap_df.Assay_Plate_Barcode.values[0], + Metadata_Plate_Map_Name=barcode_platemap_df.Plate_Map_Name.values[0], + ) # Reoroder columns metadata_cols = cyto_utils.infer_cp_features(anno_df, metadata=True) diff --git a/profiles/profile_utils.py b/profiles/profile_utils.py index 537aeaf..75811d3 100644 --- a/profiles/profile_utils.py +++ b/profiles/profile_utils.py @@ -12,7 +12,22 @@ def get_args(): parser.add_argument("-a", "--barcode_platemap_file", help="path of plate info") parser.add_argument("-m", "--moa_file", help="path of moa/target data storing") parser.add_argument("-o", "--output_dir", help="the directory to output the files") + parser.add_argument( + "-i", "--cell_id", default="A549", help="the profiled cell line" + ) parser.add_argument("-c", "--cell_count_dir", help="directory to save cell counts") + parser.add_argument( + "-w", + "--well_col", + default="Image_Metadata_Well", + help="which column to represent wells", + ) + parser.add_argument( + "-l", + "--plate_col", + default="Image_Metadata_Plate", + help="which column to represent plate", + ) args = parser.parse_args() return args @@ -26,6 +41,33 @@ def get_pipeline_args(): action="store_true", help="reprocess and overwrite all data", ) + parser.add_argument( + "-b", + "--batch", + default="2016_04_01_a549_48hr_batch1", + help="string indicating the batch name", + ) + parser.add_argument( + "-p", "--plate_prefix", default="SQ", help="Prefix to identify plates" + ) + parser.add_argument( + "-w", + "--well_col", + default="Image_Metadata_Well", + help="which column to represent wells", + ) + parser.add_argument( + "-l", + "--plate_col", + default="Image_Metadata_Plate", + help="which column to represent plate", + ) + parser.add_argument( + "-e", + "--extract_cell_line", + action="store_true", + help="Add flag to extract cell line from platemap id", + ) args = parser.parse_args() return args diff --git a/profiles/profiling_pipeline.py b/profiles/profiling_pipeline.py index b42298b..d305009 100644 --- a/profiles/profiling_pipeline.py +++ b/profiles/profiling_pipeline.py @@ -11,10 +11,14 @@ # Load Command Line Arguments args = get_pipeline_args() overwrite = args.overwrite # The default is False +batch = args.batch # The default is 2016_04_01_a549_48hr_batch1 +plate_prefix = args.plate_prefix # The default is "SQ" +well_col = args.well_col # The default is "Image_Metadata_Well" +plate_col = args.plate_col # The default is "Image_Metadata_Plate" +extract_cell_line = args.extract_cell_line # The default is False # Load constants project = "2015_10_05_DrugRepurposing_AravindSubramanian_GolubLab_Broad" -batch = "2016_04_01_a549_48hr_batch1" profile_dir = pathlib.PurePath( "/home/ubuntu/bucket/projects/", project, "workspace/backend" ) @@ -31,7 +35,7 @@ # Load plate information plate_dir = pathlib.PurePath(profile_dir, batch) -plates = [x for x in os.listdir(plate_dir) if x.startswith("SQ")] +plates = [x for x in os.listdir(plate_dir) if x.startswith(plate_prefix)] if not overwrite: # Only process plates that are not already completely processed @@ -60,13 +64,18 @@ "Assay_Plate_Barcode == @plate" ).Plate_Map_Name.values[0] + if extract_cell_line: + cell_id = platemap_id.split("_")[1] + else: + cell_id = "A549" + platemap_file = pathlib.PurePath(platemap_dir, f"{platemap_id}.txt") sql_base = pathlib.PurePath(profile_dir, batch, plate, f"{plate}.sqlite") sql_file = f"sqlite:////{sql_base}" cmd = [ "python", - "profile.py", + "profile_cells.py", "--sql_file", sql_file, "--batch", @@ -81,7 +90,13 @@ moa_file, "--output_dir", output_dir, + "--cell_id", + cell_id, "--cell_count_dir", cell_count_dir, + "--well_col", + well_col, + "--plate_col", + plate_col, ] subprocess.call(cmd) diff --git a/spherized_profiles/profiles/2016_04_01_a549_48hr_batch1_dmso_spherized_profiles_with_input_normalized_by_dmso.csv.gz b/spherized_profiles/profiles/2016_04_01_a549_48hr_batch1_dmso_spherized_profiles_with_input_normalized_by_dmso.csv.gz new file mode 100644 index 0000000..10ada2b --- /dev/null +++ b/spherized_profiles/profiles/2016_04_01_a549_48hr_batch1_dmso_spherized_profiles_with_input_normalized_by_dmso.csv.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c1c20fe49259c4e91454b1e063223edcb18fec8e409298eef2387cd1479a27cb +size 290341784 diff --git a/spherized_profiles/profiles/2016_04_01_a549_48hr_batch1_dmso_spherized_profiles_with_input_normalized_by_whole_plate.csv.gz b/spherized_profiles/profiles/2016_04_01_a549_48hr_batch1_dmso_spherized_profiles_with_input_normalized_by_whole_plate.csv.gz new file mode 100644 index 0000000..ffd2ca2 --- /dev/null +++ b/spherized_profiles/profiles/2016_04_01_a549_48hr_batch1_dmso_spherized_profiles_with_input_normalized_by_whole_plate.csv.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b2ef2163c6f9d0a5fb573a261c482257420f682a99ed07e66c1c1a411bc99e32 +size 327458899 diff --git a/spherized_profiles/profiles/2017_12_05_Batch2_dmso_spherized_profiles_with_input_normalized_by_dmso.csv.gz b/spherized_profiles/profiles/2017_12_05_Batch2_dmso_spherized_profiles_with_input_normalized_by_dmso.csv.gz new file mode 100644 index 0000000..374f044 --- /dev/null +++ b/spherized_profiles/profiles/2017_12_05_Batch2_dmso_spherized_profiles_with_input_normalized_by_dmso.csv.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:dd78159dcf8c88a453240025e6ecb19a2c0fe26989a5491d24ebbffb7bd794b8 +size 103902586 diff --git a/spherized_profiles/profiles/2017_12_05_Batch2_dmso_spherized_profiles_with_input_normalized_by_whole_plate.csv.gz b/spherized_profiles/profiles/2017_12_05_Batch2_dmso_spherized_profiles_with_input_normalized_by_whole_plate.csv.gz new file mode 100644 index 0000000..63fe128 --- /dev/null +++ b/spherized_profiles/profiles/2017_12_05_Batch2_dmso_spherized_profiles_with_input_normalized_by_whole_plate.csv.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:dbe636236325e325743735786c45fc627d3d9a833f512066d795847b7b576eeb +size 268978977 diff --git a/spherized_profiles/scripts/nbconverted/spherize-batch-effects.py b/spherized_profiles/scripts/nbconverted/spherize-batch-effects.py new file mode 100644 index 0000000..7fcbb86 --- /dev/null +++ b/spherized_profiles/scripts/nbconverted/spherize-batch-effects.py @@ -0,0 +1,100 @@ +#!/usr/bin/env python +# coding: utf-8 + +# ## Adjust batch effects with a spherize transform +# +# Here, we load in all normalized profiles (level 4a) data across all plates and apply a spherize transform using the DMSO profiles as the background distribution. +# +# We've previously observed that sphering (aka whitening) the data successfully adjusts for technical artifacts induced by batch to batch variation and plate position effects. + +# In[1]: + + +import os +import pathlib +import subprocess +import pandas as pd + +from pycytominer import normalize, feature_select +from pycytominer.cyto_utils import output, infer_cp_features + + +# In[2]: + + +input_dir = pathlib.Path("../profiles/") +batches = ["2016_04_01_a549_48hr_batch1", "2017_12_05_Batch2"] + +suffixes = { + "whole_plate": "_normalized.csv.gz", + "dmso": "_normalized_dmso.csv.gz" +} + +plates = { + batch: [x.name for x in pathlib.Path(f"{input_dir}/{batch}").iterdir() if ".DS_Store" not in x.name] + for batch in batches +} + +files = { + batch: { + suffix: [pathlib.Path(f"{input_dir}/{batch}/{x}/{x}{suffixes[suffix]}") for x in plates[batch]] + for suffix in suffixes + } + for batch in batches +} + +feature_select_ops = [ + "variance_threshold", + "correlation_threshold", + "drop_na_columns", + "blacklist", + "drop_outliers" +] + +na_cut = 0 +corr_threshold = 0.95 +outlier_cutoff = 60 + +output_dir = "profiles" + + +# In[3]: + + +for batch in batches: + for suffix in suffixes: + output_file = pathlib.Path( + f"{output_dir}/{batch}_dmso_spherized_profiles_with_input_normalized_by_{suffix}.csv.gz" + ) + print(f"Now processing {output_file}...") + + profile_df = pd.concat([pd.read_csv(x) for x in files[batch][suffix]]).reset_index(drop=True) + + # Perform feature selection + profile_df = feature_select( + profiles=profile_df, + operation=feature_select_ops, + na_cutoff=0, + corr_threshold=corr_threshold, + outlier_cutoff=outlier_cutoff + ) + + print(profile_df.shape) + profile_df.head() + + spherize_df = normalize( + profiles=profile_df, + features="infer", + meta_features="infer", + samples="Metadata_broad_sample == 'DMSO'", + method="whiten", + ) + + print(spherize_df.shape) + spherize_df.head() + + output( + df=spherize_df, + output_filename=output_file + ) + diff --git a/spherized_profiles/spherize-batch-effects.ipynb b/spherized_profiles/spherize-batch-effects.ipynb new file mode 100644 index 0000000..4ccc929 --- /dev/null +++ b/spherized_profiles/spherize-batch-effects.ipynb @@ -0,0 +1,156 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Adjust batch effects with a spherize transform\n", + "\n", + "Here, we load in all normalized profiles (level 4a) data across all plates and apply a spherize transform using the DMSO profiles as the background distribution.\n", + "\n", + "We've previously observed that sphering (aka whitening) the data successfully adjusts for technical artifacts induced by batch to batch variation and plate position effects." + ] + }, + { + "cell_type": "code", + "execution_count": 1, + "metadata": {}, + "outputs": [], + "source": [ + "import os\n", + "import pathlib\n", + "import subprocess\n", + "import pandas as pd\n", + "\n", + "from pycytominer import normalize, feature_select\n", + "from pycytominer.cyto_utils import output, infer_cp_features" + ] + }, + { + "cell_type": "code", + "execution_count": 2, + "metadata": {}, + "outputs": [], + "source": [ + "input_dir = pathlib.Path(\"../profiles/\")\n", + "batches = [\"2016_04_01_a549_48hr_batch1\", \"2017_12_05_Batch2\"]\n", + "\n", + "suffixes = {\n", + " \"whole_plate\": \"_normalized.csv.gz\",\n", + " \"dmso\": \"_normalized_dmso.csv.gz\"\n", + "}\n", + "\n", + "plates = {\n", + " batch: [x.name for x in pathlib.Path(f\"{input_dir}/{batch}\").iterdir() if \".DS_Store\" not in x.name]\n", + " for batch in batches\n", + "}\n", + "\n", + "files = {\n", + " batch: {\n", + " suffix: [pathlib.Path(f\"{input_dir}/{batch}/{x}/{x}{suffixes[suffix]}\") for x in plates[batch]]\n", + " for suffix in suffixes\n", + " }\n", + " for batch in batches\n", + "}\n", + "\n", + "feature_select_ops = [\n", + " \"variance_threshold\",\n", + " \"correlation_threshold\",\n", + " \"drop_na_columns\",\n", + " \"blacklist\",\n", + " \"drop_outliers\"\n", + "]\n", + "\n", + "na_cut = 0\n", + "corr_threshold = 0.95\n", + "outlier_cutoff = 60\n", + "\n", + "output_dir = \"profiles\"" + ] + }, + { + "cell_type": "code", + "execution_count": 3, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Now processing profiles/2016_04_01_a549_48hr_batch1_dmso_spherized_profiles_with_input_normalized_by_whole_plate.csv.gz...\n", + "(52223, 711)\n", + "(52223, 711)\n", + "Now processing profiles/2016_04_01_a549_48hr_batch1_dmso_spherized_profiles_with_input_normalized_by_dmso.csv.gz...\n", + "(52223, 632)\n", + "(52223, 632)\n", + "Now processing profiles/2017_12_05_Batch2_dmso_spherized_profiles_with_input_normalized_by_whole_plate.csv.gz...\n", + "(51447, 600)\n", + "(51447, 600)\n", + "Now processing profiles/2017_12_05_Batch2_dmso_spherized_profiles_with_input_normalized_by_dmso.csv.gz...\n", + "(51447, 247)\n", + "(51447, 247)\n" + ] + } + ], + "source": [ + "for batch in batches:\n", + " for suffix in suffixes:\n", + " output_file = pathlib.Path(\n", + " f\"{output_dir}/{batch}_dmso_spherized_profiles_with_input_normalized_by_{suffix}.csv.gz\"\n", + " )\n", + " print(f\"Now processing {output_file}...\")\n", + "\n", + " profile_df = pd.concat([pd.read_csv(x) for x in files[batch][suffix]]).reset_index(drop=True)\n", + "\n", + " # Perform feature selection\n", + " profile_df = feature_select(\n", + " profiles=profile_df,\n", + " operation=feature_select_ops,\n", + " na_cutoff=0,\n", + " corr_threshold=corr_threshold,\n", + " outlier_cutoff=outlier_cutoff\n", + " )\n", + "\n", + " print(profile_df.shape)\n", + " profile_df.head()\n", + "\n", + " spherize_df = normalize(\n", + " profiles=profile_df,\n", + " features=\"infer\",\n", + " meta_features=\"infer\",\n", + " samples=\"Metadata_broad_sample == 'DMSO'\",\n", + " method=\"whiten\",\n", + " )\n", + "\n", + " print(spherize_df.shape)\n", + " spherize_df.head()\n", + "\n", + " output(\n", + " df=spherize_df,\n", + " output_filename=output_file\n", + " )" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.7.10" + } + }, + "nbformat": 4, + "nbformat_minor": 4 +}