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Update pycytominer version #53

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gwaybio opened this issue Sep 25, 2020 · 2 comments
Closed

Update pycytominer version #53

gwaybio opened this issue Sep 25, 2020 · 2 comments
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enhancement New feature or request

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@gwaybio
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gwaybio commented Sep 25, 2020

we have made substantial progress in pycytominer since version 0.1 release. We need to update the environment.yml file and update the profiling pipeline to account for this change.

@gwaybio gwaybio added the enhancement New feature or request label Sep 25, 2020
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gwaybio commented Sep 29, 2020

Let's go with git+https://github.com/cytomining/pycytominer@0205e2519dd08bde2624f50bcd05518d19cc7f32 in the new environment.yml. All necessary functionality is present in this commit.

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gwaybio commented May 21, 2021

We will eventually want to upgrade pycytominer to a more stable version.

Perhaps this happens after @michaelbornholdt 1) makes the final connections between DeepProfiler and pycytominer, and 2) processes and uploads LINCS Cell Painting feature embeddings for batch 1 and batch 2 LINCS data

(☝️ related to #2 )


This will happen after the version 1.0 data release

@gwaybio gwaybio closed this as completed Jun 18, 2021
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