diff --git a/pipes/WDL/tasks/tasks_read_utils.wdl b/pipes/WDL/tasks/tasks_read_utils.wdl index b23861bba..eb87d3b44 100644 --- a/pipes/WDL/tasks/tasks_read_utils.wdl +++ b/pipes/WDL/tasks/tasks_read_utils.wdl @@ -367,9 +367,11 @@ task FastqToUBAM { String? sequencing_center String? additional_picard_options + Int cpus = 2 + Int mem_gb = 3 + Int disk_size = 375 String docker = "quay.io/broadinstitute/viral-core:2.4.1" } - Int disk_size = 375 parameter_meta { fastq_1: { description: "Unaligned read1 file in fastq format", patterns: ["*.fastq", "*.fastq.gz", "*.fq", "*.fq.gz"] } fastq_2: { description: "Unaligned read2 file in fastq format. This should be empty for single-end read conversion and required for paired-end reads. If provided, it must match fastq_1 in length and order.", patterns: ["*.fastq", "*.fastq.gz", "*.fq", "*.fq.gz"] } @@ -401,8 +403,8 @@ task FastqToUBAM { } runtime { docker: docker - cpu: 2 - memory: "3 GB" + cpu: cpus + memory: mem_gb + " GB" disks: "local-disk " + disk_size + " LOCAL" disk: disk_size + " GB" # TES dx_instance_type: "mem1_ssd1_v2_x2"