add cellbender to optimus #679
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| # This is a github action that will update a file named “pipeline_versions.txt” (or create if it doesn’t exist) with the following content: | |
| # tab-delimited with columns “pipeline name”, “version”, “date of last commit”. | |
| name: Update Pipeline Versions | |
| on: | |
| pull_request: | |
| # This workflow will run on PR to develop and will update the pipeline_versions.txt file on the source branch (ie. the branch that triggered the PR) | |
| branches: | |
| - develop | |
| workflow_dispatch: | |
| jobs: | |
| update_versions: | |
| runs-on: ubuntu-latest | |
| steps: | |
| # This step checks out the code - explicitly fetch the history and checkout the branch to enable us to push files back to the repo | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| with: | |
| ref: ${{ github.head_ref }} # This fetches the branch name that triggered the workflow | |
| fetch-depth: 0 # This fetches all history for all branches and tags | |
| # This step sets up Python environment | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.x | |
| # This step updates a a file called "pipeline_versions.txt" with the names, versions, and last commit dates of all the pipelines found in the | |
| # "warp/pipelines" directory by parsing the contents of the "*.changelog.md" files. | |
| - name: Update Pipeline Versions | |
| run: | | |
| echo "Current directory: " | |
| pwd | |
| ls -lht | |
| echo -e "Pipeline Name\tVersion\tDate of Last Commit" > pipeline_versions.txt | |
| find pipelines -name "*.changelog.md" -type f | while read -r file; do | |
| pipeline_name=$(basename "$file" .changelog.md) | |
| version=$(head -n 1 "$file" | sed 's/#//') | |
| last_commit_date=$(sed -n '2p' "$file" | sed 's/([^)]*)//g') | |
| echo -e "$pipeline_name\t$version\t$last_commit_date" >> pipeline_versions.txt | |
| done | |
| # This step commits and pushes the changes to the repository | |
| - name: Commit and push changes | |
| run: | | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "GitHub Action" | |
| git add pipeline_versions.txt | |
| if git diff-index --quiet HEAD --; then | |
| echo "No changes to commit" | |
| else | |
| git commit -m "Updated pipeline_versions.txt with all pipeline version information" | |
| git push | |
| fi | |