From 1f381835e42e670fc056075cde7462a0acfe7832 Mon Sep 17 00:00:00 2001
From: Megan Shand <mshand@broadinstitute.org>
Date: Wed, 17 Jul 2024 14:26:59 -0400
Subject: [PATCH] cleaning up VerifyNA12878 outputs

---
 verification/VerifyNA12878.wdl | 6 ++----
 1 file changed, 2 insertions(+), 4 deletions(-)

diff --git a/verification/VerifyNA12878.wdl b/verification/VerifyNA12878.wdl
index 188fca6654..b7ecfe1dbe 100644
--- a/verification/VerifyNA12878.wdl
+++ b/verification/VerifyNA12878.wdl
@@ -81,10 +81,8 @@ task RunValidation {
 
     output {
         Array[File] concordance_tables = glob("./*.summary.tsv")
-        Array[File] tpfn = glob("./*.tpfn.vcf.gz")
-        Array[File] tpfn_index = glob("./*.tpfn.vcf.gz.tbi")
-        Array[File] tpfp = glob("./*.tpfp.vcf.gz")
-        Array[File] tpfp_index = glob("./*.tpfp.vcf.gz.tbi")
+        Array[File] tpfn = glob("./*.tpfn.vcf.gz*")
+        Array[File] tpfp = glob("./*.tpfp.vcf.gz*")
     }
 
     runtime {