From b42fcf9b506c6ef55e95ac3a6cd9d00b370cfc9a Mon Sep 17 00:00:00 2001 From: npetrill Date: Tue, 10 Dec 2024 12:39:59 -0500 Subject: [PATCH] print instead of log --- .github/workflows/test_illumina_genotyping_array.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/test_illumina_genotyping_array.yml b/.github/workflows/test_illumina_genotyping_array.yml index 87ef239d4a..9bd26e95d1 100644 --- a/.github/workflows/test_illumina_genotyping_array.yml +++ b/.github/workflows/test_illumina_genotyping_array.yml @@ -232,12 +232,12 @@ jobs: echo "Attempt $attempt: Submitting job for input file: $input_file" #echo "Submitting job for input file: $input_file" #cat "$SUBMISSION_DATA_FILE" - python3 scripts/firecloud_api/firecloud_api2.py submit_job \ + $SUBMISSION_ID=$(python3 scripts/firecloud_api/firecloud_api2.py submit_job \ --workspace-namespace "warp-pipelines" \ --workspace-name "WARP Tests" \ --sa-json-b64 "$SA_JSON_B64" \ --user "pdt-tester@warp-pipeline-dev.iam.gserviceaccount.com" \ - --submission_data_file "$SUBMISSION_DATA_FILE" + --submission_data_file "$SUBMISSION_DATA_FILE") #echo "submission id is $SUBMISSION_ID" #SUBMISSION_ID=$(firecloud_action submit_job --submission_data_file "$SUBMISSION_DATA_FILE")