try to hit dockstore

.github/workflows/test_illumina_genotyping_array.yml

@@ -95,7 +95,7 @@ jobs:
 
       - name: Fetch Dockstore Workflow ID
         run: |
-          python scripts/dockstore_api/fetch_dockstore_id.py $DOCKSTORE_TOKEN github.com%2Fbroadinstitute%2Fwarp%2FIlluminaGenotypingArray BIOWORKFLOW np_jw_test_illumina_genotyping_arrays
+          python scripts/dockstore_api/fetch_dockstore_commit.py $DOCKSTORE_TOKEN github.com%2Fbroadinstitute%2Fwarp%2FIlluminaGenotypingArray BIOWORKFLOW np_jw_test_illumina_genotyping_arrays
         env:
           ##TODO NEED TO ADD DOCKSTORE_TOKEN FOR SERVICE ACCOUNT##
           DOCKSTORE_TOKEN: ${{ secrets.DOCKSTORE_TOKEN }}

scripts/dockstore_api/fetch_dockstore_commit.py

@@ -0,0 +1,62 @@
+import requests
+import sys
+
+def fetch_workflow_and_version_ids(token, repository, subclass, version_name):
+    url = f"https://dockstore.org/api/workflows/path/workflow/{repository}/published"
+    headers = {
+        "Authorization": f"Bearer {token}",
+        "Accept": "application/json",
+    }
+
+    response = requests.get(url, headers=headers)
+    response.raise_for_status()
+    data = response.json()
+
+    # Extract workflow and version IDs
+    workflow_id = data.get("id")
+    version_id = next(
+        (version["id"] for version in data.get("workflowVersions", [])
+         if version["name"] == version_name),
+        None
+    )
+
+    if not workflow_id or not version_id:
+        raise ValueError("Workflow ID or Version ID could not be found.")
+
+    return workflow_id, version_id
+
+def fetch_commit_id(token, workflow_id, version_id):
+    url = f"https://dockstore.org/api/workflows/{workflow_id}/workflowVersions/{version_id}"
+    headers = {
+        "Authorization": f"Bearer {token}",
+        "Accept": "application/json",
+    }
+
+    response = requests.get(url, headers=headers)
+    response.raise_for_status()
+    data = response.json()
+
+    # Extract commit ID
+    commit_id = data.get("commitID")
+    if not commit_id:
+        raise ValueError("Commit ID could not be found.")
+
+    return commit_id
+
+if __name__ == "__main__":
+    if len(sys.argv) != 5:
+        print("Usage: python fetch_dockstore_commit.py <token> <repository> <subclass> <version_name>")
+        sys.exit(1)
+
+    _, token, repository, subclass, version_name = sys.argv
+
+    try:
+        workflow_id, version_id = fetch_workflow_and_version_ids(token, repository, subclass, version_name)
+        print(f"Workflow ID: {workflow_id}")
+        print(f"Version ID: {version_id}")
+
+        commit_id = fetch_commit_id(token, workflow_id, version_id)
+        print(f"Commit ID: {commit_id}")
+
+    except Exception as e:
+        print(f"Error: {e}")