From dac4de4520a7e7f6659fde79bc5a9b98e40db7df Mon Sep 17 00:00:00 2001
From: ekiernan <ekiernan@broadinstitute.org>
Date: Mon, 23 Sep 2024 11:42:03 -0400
Subject: [PATCH] nhash_id optional

---
 pipelines/skylab/multiome/Multiome.wdl | 2 +-
 pipelines/skylab/optimus/Optimus.wdl   | 2 +-
 tasks/skylab/H5adUtils.wdl             | 4 ++--
 3 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/pipelines/skylab/multiome/Multiome.wdl b/pipelines/skylab/multiome/Multiome.wdl
index 418721f704..3979a4fa7d 100644
--- a/pipelines/skylab/multiome/Multiome.wdl
+++ b/pipelines/skylab/multiome/Multiome.wdl
@@ -16,7 +16,7 @@ workflow Multiome {
         String cloud_provider
         String input_id
         # Additional library aliquot ID
-        String? nhash_id = ""
+        String? nhash_id
 
         # Optimus Inputs
         String counting_mode = "sn_rna"
diff --git a/pipelines/skylab/optimus/Optimus.wdl b/pipelines/skylab/optimus/Optimus.wdl
index 1a2b74757f..058195b561 100644
--- a/pipelines/skylab/optimus/Optimus.wdl
+++ b/pipelines/skylab/optimus/Optimus.wdl
@@ -26,7 +26,7 @@ workflow Optimus {
     Array[File]? i1_fastq
     String input_id
     # String for additional library aliquot ID
-    String? gex_nhash_id = ""
+    String? gex_nhash_id
     String output_bam_basename = input_id
     String? input_name
     String? input_id_metadata_field
diff --git a/tasks/skylab/H5adUtils.wdl b/tasks/skylab/H5adUtils.wdl
index cea3eab463..11e2eca4de 100644
--- a/tasks/skylab/H5adUtils.wdl
+++ b/tasks/skylab/H5adUtils.wdl
@@ -9,7 +9,7 @@ task OptimusH5adGeneration {
     String warp_tools_docker_path
     # name of the sample
     String input_id
-    String gex_nhash_id = ""
+    String? gex_nhash_id
     # user provided id
     String? counting_mode
     Int expected_cells = 3000
@@ -119,7 +119,7 @@ task SingleNucleusOptimusH5adOutput {
         # name of the sample
         String input_id
         # additional aliquot id
-        String gex_nhash_id = ""
+        String? gex_nhash_id
         # user provided id
         String? counting_mode
         Int expected_cells = 3000