PD-2757: Add Optimus as first task to the Slidetag WDL #1440

aawdeh · 2024-12-02T15:44:28Z

Checklist

If you can answer "yes" to the following items, please add a checkmark next to the appropriate checklist item(s) and notify our WARP team by tagging @broadinstitute/warp-admins in a comment on this PR.

Did you add inputs, outputs, or tasks to a workflow?
Did you modify, delete or move: file paths, file names, input names, output names, or task names?
If you made a changelog update, did you update the pipeline version number?

github-actions · 2024-12-02T15:44:43Z

Remember to squash merge!

github-actions · 2024-12-02T15:44:52Z

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

github-actions · 2024-12-02T15:44:55Z

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Multiome.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
Optimus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

github-actions · 2024-12-02T16:03:36Z

Remember to squash merge!

github-actions · 2024-12-02T16:03:48Z

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Multiome.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
Optimus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

github-actions · 2024-12-02T16:03:48Z

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

github-actions · 2024-12-02T16:58:13Z

Remember to squash merge!

github-actions · 2024-12-02T16:58:26Z

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

github-actions · 2024-12-02T16:58:27Z

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Multiome.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
Optimus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

github-actions · 2024-12-02T17:00:01Z

Remember to squash merge!

github-actions · 2024-12-02T17:00:13Z

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

github-actions · 2024-12-02T17:00:14Z

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Multiome.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
Optimus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

github-actions · 2024-12-02T17:04:54Z

Remember to squash merge!

github-actions · 2024-12-02T17:05:04Z

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Multiome.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
Optimus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

github-actions · 2024-12-02T17:05:04Z

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

github-actions · 2024-12-02T17:11:33Z

Remember to squash merge!

github-actions · 2024-12-02T17:11:45Z

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Multiome.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
Optimus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

github-actions · 2024-12-02T17:11:46Z

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

github-actions · 2024-12-02T18:43:48Z

Remember to squash merge!

github-actions · 2024-12-02T18:44:00Z

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

github-actions · 2024-12-02T18:44:01Z

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Multiome.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
Optimus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

github-actions · 2024-12-02T19:16:32Z

Remember to squash merge!

github-actions · 2024-12-02T19:16:44Z

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Multiome.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
Optimus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

github-actions · 2024-12-02T19:16:44Z

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

github-actions · 2024-12-03T13:25:12Z

Remember to squash merge!

github-actions · 2024-12-03T13:25:22Z

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Multiome.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
Optimus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

github-actions · 2024-12-03T13:25:24Z

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

github-actions · 2024-12-03T13:32:30Z

Remember to squash merge!

github-actions · 2024-12-03T13:32:40Z

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Multiome.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
Optimus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

github-actions · 2024-12-03T13:32:42Z

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

github-actions · 2024-12-12T18:48:15Z

Remember to squash merge!

github-actions · 2024-12-12T18:48:25Z

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Multiome.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
Optimus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

github-actions · 2024-12-12T18:48:25Z

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
MultiSampleSmartSeq2SingleNucleus.wdl has not been changed and needs updating
SlideSeq.wdl has not been changed and needs updating
Some WDLs or changelog files need updating. See output for details.
validation_failed

github-actions · 2024-12-12T18:53:02Z

Remember to squash merge!

github-actions · 2024-12-12T18:53:13Z

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Multiome.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

github-actions · 2024-12-12T18:53:15Z

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

…te/warp into aa-optimus-slidetag

github-actions · 2024-12-12T18:58:39Z

Remember to squash merge!

github-actions · 2024-12-12T18:58:51Z

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

github-actions · 2024-12-12T18:58:53Z

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Multiome.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

Add optimus

ee8358a

Add optimus

1111580

Add optimus

9a4ad65

Add optimus

8f898ef

Add optimus

c4342f7

Add optimus

312554e

Add optimus

70840c4

Add optimus

b23615f

Add optimus

7b3a0da

Add optimus

6ffaefc

aawdeh added 3 commits December 9, 2024 10:38

test

afec37d

add boolean for disk

f9014db

Merge branch 'develop' into aa-optimus-slidetag

e4d6aee

updated version numbers

7c78925

Updated pipeline_versions.txt with all pipeline version information

c2883ca

aawdeh added 2 commits December 12, 2024 13:58

fixed disk

24ea763

Merge branch 'aa-optimus-slidetag' of https://github.com/broadinstitu…

69cd439

…te/warp into aa-optimus-slidetag

PD-2757: Add Optimus as first task to the Slidetag WDL #1440

Are you sure you want to change the base?

PD-2757: Add Optimus as first task to the Slidetag WDL #1440

Conversation

aawdeh commented Dec 2, 2024

Checklist

github-actions bot commented Dec 2, 2024

github-actions bot commented Dec 2, 2024

🔍Version Validation Results:

github-actions bot commented Dec 2, 2024

🔍Changelog Validation Results:

github-actions bot commented Dec 2, 2024

github-actions bot commented Dec 2, 2024

🔍Changelog Validation Results:

github-actions bot commented Dec 2, 2024

🔍Version Validation Results:

github-actions bot commented Dec 2, 2024

github-actions bot commented Dec 2, 2024

🔍Version Validation Results:

github-actions bot commented Dec 2, 2024

🔍Changelog Validation Results:

github-actions bot commented Dec 2, 2024

github-actions bot commented Dec 2, 2024

🔍Version Validation Results:

github-actions bot commented Dec 2, 2024

🔍Changelog Validation Results:

github-actions bot commented Dec 2, 2024

github-actions bot commented Dec 2, 2024

🔍Changelog Validation Results:

github-actions bot commented Dec 2, 2024

🔍Version Validation Results:

github-actions bot commented Dec 2, 2024

github-actions bot commented Dec 2, 2024

🔍Changelog Validation Results:

github-actions bot commented Dec 2, 2024

🔍Version Validation Results:

github-actions bot commented Dec 2, 2024

github-actions bot commented Dec 2, 2024

🔍Version Validation Results:

github-actions bot commented Dec 2, 2024

🔍Changelog Validation Results:

github-actions bot commented Dec 2, 2024

github-actions bot commented Dec 2, 2024

🔍Changelog Validation Results:

github-actions bot commented Dec 2, 2024

🔍Version Validation Results:

github-actions bot commented Dec 3, 2024

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🔍Changelog Validation Results:

github-actions bot commented Dec 3, 2024

🔍Version Validation Results:

github-actions bot commented Dec 3, 2024

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🔍Changelog Validation Results:

github-actions bot commented Dec 3, 2024

🔍Version Validation Results:

github-actions bot commented Dec 12, 2024

github-actions bot commented Dec 12, 2024

🔍Changelog Validation Results:

github-actions bot commented Dec 12, 2024

🔍Version Validation Results:

github-actions bot commented Dec 12, 2024

github-actions bot commented Dec 12, 2024

🔍Changelog Validation Results:

github-actions bot commented Dec 12, 2024

🔍Version Validation Results:

github-actions bot commented Dec 12, 2024

github-actions bot commented Dec 12, 2024

🔍Version Validation Results:

github-actions bot commented Dec 12, 2024

🔍Changelog Validation Results: