dev -> staging #1444
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dev -> staging #1444
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Bumps [http-proxy-middleware](https://github.com/chimurai/http-proxy-middleware) from 2.0.6 to 2.0.7. - [Release notes](https://github.com/chimurai/http-proxy-middleware/releases) - [Changelog](https://github.com/chimurai/http-proxy-middleware/blob/v2.0.7/CHANGELOG.md) - [Commits](chimurai/http-proxy-middleware@v2.0.6...v2.0.7) --- updated-dependencies: - dependency-name: http-proxy-middleware dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Jessica Way <[email protected]>
Bumps [express](https://github.com/expressjs/express) from 4.18.2 to 4.21.1. - [Release notes](https://github.com/expressjs/express/releases) - [Changelog](https://github.com/expressjs/express/blob/4.21.1/History.md) - [Commits](expressjs/express@4.18.2...4.21.1) --- updated-dependencies: - dependency-name: express dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Jessica Way <[email protected]>
Bumps [webpack](https://github.com/webpack/webpack) from 5.88.1 to 5.96.1. - [Release notes](https://github.com/webpack/webpack/releases) - [Commits](webpack/webpack@v5.88.1...v5.96.1) --- updated-dependencies: - dependency-name: webpack dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Nikelle Petrillo <[email protected]>
…1426) Bumps [jinja2](https://github.com/pallets/jinja) from 3.1.3 to 3.1.4. - [Release notes](https://github.com/pallets/jinja/releases) - [Changelog](https://github.com/pallets/jinja/blob/main/CHANGES.rst) - [Commits](pallets/jinja@3.1.3...3.1.4) --- updated-dependencies: - dependency-name: jinja2 dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Nikelle Petrillo <[email protected]>
* use a fake file * more checks * more checks * more checks * use quickcheck * use quickcheck * missing quote * cleaning up * remove fake file * changelogs * Updated pipeline_versions.txt with all pipeline version information --------- Co-authored-by: GitHub Action <[email protected]>
…bly (#1431) Updated docker for h5ad creation in Optimus allowing for more flexible gene_id handling
* add pipeline metadata txt to BuildIndices.wdl * more disk space * more disk space * more disk space * more disk space * more disk space * more disk space * more disk space * more disk space * more disk space * more disk space * more disk space * more disk space * need all as files * need all as files * need all as files * need all as files * grab the full paths * changelogs * Updated pipeline_versions.txt with all pipeline version information --------- Co-authored-by: GitHub Action <[email protected]>
* debugging * remove ls "$SoloDirectory"/*. * clean up commented out code * changelogs * Updated pipeline_versions.txt with all pipeline version information * Updated pipeline_versions.txt with all pipeline version information * Update tasks/skylab/StarAlign.wdl --------- Co-authored-by: GitHub Action <[email protected]>
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DO NOT SQUASH MERGE!!! |
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ekiernan
approved these changes
Dec 5, 2024
khajoue2
approved these changes
Dec 5, 2024
* update optimus methods * add atac methods * add snm3c methods * update snm3c methods * atac snm3c and docsite * rewrite snm3c * Update website/docs/Pipelines/ATAC/atac.methods.md Co-authored-by: Elizabeth Kiernan <[email protected]> * Update website/docs/Pipelines/Optimus_Pipeline/optimus.methods.md Co-authored-by: Elizabeth Kiernan <[email protected]> * Update website/docs/Pipelines/Optimus_Pipeline/optimus.methods.md Co-authored-by: Elizabeth Kiernan <[email protected]> * Update website/docs/Pipelines/Optimus_Pipeline/optimus.methods.md Co-authored-by: Elizabeth Kiernan <[email protected]> * Update website/docs/Pipelines/Optimus_Pipeline/optimus.methods.md Co-authored-by: Elizabeth Kiernan <[email protected]> --------- Co-authored-by: Elizabeth Kiernan <[email protected]>
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DO NOT SQUASH MERGE!!! |
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