PairedTag_develop

1.9.0

2024-12-05 (Date of Last Commit)

• Added an optional task to the Optimus.wdl that will run CellBender on the Optimus output h5ad file

Optimus_develop

7.9.0

2024-12-05 (Date of Last Commit)

• Added an optional task to the Optimus.wdl that will run CellBender on the Optimus output h5ad file

Multiome_develop

5.9.4

2024-12-05 (Date of Last Commit)

• Moved the optional CellBender task to the Optimus.wdl

SlideSeq_develop

3.4.7

2024-12-3 (Date of Last Commit)

• Fixed a bug in the StarSoloFastq task that caused the pipeline to not output a UniqueAndMult-Uniform.mtx when --soloMultiMappers Uniform was passed to STAR; this does not affect the outputs of the pipeline

MultiSampleSmartSeq2SingleNucleus_develop

2.0.6

2024-11-15 (Date of Last Commit)

• Fixed a bug in the StarSoloFastq task that caused the pipeline to not output a UniqueAndMult-Uniform.mtx when --soloMultiMappers Uniform was passed to STAR; this does not affect the outputs of the pipeline

BuildIndices_develop

3.1.0

2024-11-26 (Date of Last Commit)

• Added metadata.txt file as an output to the pipeline

atac_develop

2.5.3

2024-11-22 (Date of Last Commit)

• Updated the warp-tools docker; this update changes the way gene_names are identified when creating gene expression h5ad files; does not impact ATAC workflow

ImputationBeagle_development_v0.0.2

add set -e -o pipefail to all relevant imputation tasks (#1434)

Co-authored-by: Jose Soto <[email protected]>

atac_v2.5.2

2.5.2

2024-11-12 (Date of Last Commit)

• Added memory and disk updates to Multiome JoinBarcodes; this does not impact the ATAC workflow

SlideSeq_v3.4.5

3.4.5

2024-11-12 (Date of Last Commit)

• Added memory and disk updates to Multiome JoinBarcodes; this does not impact the SlideSeq workflow