Fix errors reported by the ruff flake8-comprehensions (C4) plugin #107
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| name: Deploy | |
| on: [push, pull_request] | |
| concurrency: | |
| group: deploy-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build_wheels: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - os: ubuntu-latest | |
| archs: auto | |
| - os: macos-latest | |
| archs: x86_64 arm64 | |
| - os: ubuntu-latest | |
| archs: aarch64 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.x' | |
| - name: Set up QEMU to build non-native architectures | |
| if: ${{ matrix.archs == 'aarch64' }} | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Install required Python packages | |
| run: | | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install 'cibuildwheel>=2.2.0' twine | |
| - name: Build wheels | |
| run: python -m cibuildwheel --output-dir dist | |
| env: | |
| CIBW_ARCHS: ${{ matrix.archs }} | |
| # Skip building musllinux wheels for the CPython versions for which the | |
| # numpy version we build against doesn't have musllinux wheels on PyPI. | |
| # Skip building for PyPy 3.8, which is deprecated upstream. | |
| # Skip building for PyPy on i686 since NumPy 2.0 fails to build on it. | |
| CIBW_SKIP: "cp38-musllinux_* pp38-* pp*-manylinux_i686" | |
| - name: Check packages | |
| run: twine check dist/* | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: "packages-${{ matrix.os }}-${{ matrix.archs }}" | |
| path: dist/ | |
| build_sdist: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.x' | |
| - name: Install required Python packages | |
| run: | | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install build twine | |
| - name: Build sdist | |
| run: | | |
| python -m build --sdist | |
| python -m venv test_venv | |
| . test_venv/bin/activate | |
| python -m pip install dist/*.tar.gz | |
| # Test with the same command specified for cibuildwheel in pyproject.toml | |
| python -c 'import bx, bx.align, bx.align.sitemask, bx.align.tools, bx.arrays, bx.bbi, bx.cookbook, bx.intervals, bx.intervals.operations, bx.intseq, bx.misc, bx.motif, bx.motif.io, bx.motif.logo, bx.phylo, bx.pwm, bx.seq, bx.tabular, bx_extras' | |
| - name: Check packages | |
| run: twine check dist/* | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: packages-sdist | |
| path: dist/ | |
| upload_pypi: | |
| needs: [build_wheels, build_sdist] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| merge-multiple: true | |
| path: dist | |
| pattern: packages-* | |
| - name: Display structure of downloaded files | |
| run: ls -R dist/ | |
| - name: Publish to PyPI | |
| if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/') && github.repository_owner == 'bxlab' | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.PYPI_API_TOKEN }} |