diff --git a/assignments/lab/bulk_RNA-seq_part1/slides_asynchronous_or_livecoding_resources/Live_coding.R b/assignments/lab/bulk_RNA-seq_part1/slides_asynchronous_or_livecoding_resources/Live_coding.R index 694ffc4..58019a6 100644 --- a/assignments/lab/bulk_RNA-seq_part1/slides_asynchronous_or_livecoding_resources/Live_coding.R +++ b/assignments/lab/bulk_RNA-seq_part1/slides_asynchronous_or_livecoding_resources/Live_coding.R @@ -67,7 +67,7 @@ ggplot(broadPcaData, aes(PC1, PC2, color=tissue, shape=rep)) + geom_point(size=5) # Convert into a matrix -broadVstdata = as.matrix(assay(broadVstdata[sds>1,])) +broadVstdata = as.matrix(assay(broadVstdata)) # Find replicate means combined = broadVstdata[,seq(1, 9, 3)]