GitHub - bxlab/esperr: Code for ESPERR (Evolutionary and Sequence Pattern Extraction through Reduced Representation)

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Code for ESPERR (Evolutionary and Sequence Pattern Extraction through Reduced Representation)

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Name		Name	Last commit message	Last commit date
Latest commit History 24 Commits
rp		rp
test_data		test_data
third_party/gill_pst		third_party/gill_pst
.hgignore		.hgignore
Makefile		Makefile
README		README
ancestral_dists.py		ancestral_dists.py
atom_mapping_to_complete.py		atom_mapping_to_complete.py
cv_precomputed_scores.py		cv_precomputed_scores.py
distribute_setup.py		distribute_setup.py
entropy_agglomeration.py		entropy_agglomeration.py
genome_windows.py		genome_windows.py
maf_to_ints.py		maf_to_ints.py
make_mapping_from_clusters.py		make_mapping_from_clusters.py
random_alphabet.py		random_alphabet.py
rp_adapt.py		rp_adapt.py
rp_adapt_mc_mpi.py		rp_adapt_mc_mpi.py
rp_adapt_mc_ts.py		rp_adapt_mc_ts.py
rp_adapt_mpi.py		rp_adapt_mpi.py
rp_combine_mappings.py		rp_combine_mappings.py
rp_cv.py		rp_cv.py
rp_cv_multiclass.py		rp_cv_multiclass.py
rp_cv_ts.py		rp_cv_ts.py
rp_dump_tree.py		rp_dump_tree.py
rp_make_mapping.py		rp_make_mapping.py
rp_prob_classify.py		rp_prob_classify.py
rp_score.py		rp_score.py
rp_score_bed_ints.py		rp_score_bed_ints.py
rp_score_maf.py		rp_score_maf.py
rp_score_maf_BUGGED.py		rp_score_maf_BUGGED.py
rp_score_words.py		rp_score_words.py
rp_train.py		rp_train.py
rp_train_probs.py		rp_train_probs.py
setup.py		setup.py
test_standard_model.py		test_standard_model.py

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Implementation of the ESPERR method for training classification  models 
on multiple alignments and creating scores (e.g. Regulatory Potential)

Code for ESPERR (Evolutionary and Sequence Pattern Extraction through Reduced Representation)

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