From 87cffeb5baba4a313b7ef9fa5c701e143c522f65 Mon Sep 17 00:00:00 2001 From: Pierre Foucault <94112613+PierreFoucault@users.noreply.github.com> Date: Fri, 12 Aug 2022 15:59:53 +0200 Subject: [PATCH] Update README.md --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 1d04055..a971ebd 100755 --- a/README.md +++ b/README.md @@ -61,8 +61,8 @@ mamba install --only-deps -c ursky metawrap-mg # `conda install --only-deps -c ursky metawrap-mg` also works, but much slower # OR -mamba install biopython blas=2.5 blast=2.6.0 bmtagger bowtie2 bwa checkm-genome fastqc kraken=1.1 kraken=2.0 krona=2.7 matplotlib maxbin2 megahit metabat2 pandas prokka quast r-ggplot2 r-recommended salmon samtools=1.9 seaborn spades trim-galore -# Note: this last solution is more universal, but you may need to manually install concoct=1.0 and pplacer. +mamba install biopython blas=2.5 blast=2.12 bmtagger bowtie2 bwa checkm-genome fastqc kraken=1.1 kraken=2.0 krona=2.7 matplotlib maxbin2 megahit metabat2 pandas prokka quast r-ggplot2 r-recommended salmon samtools=1.9 seaborn spades trim-galore +# Note: this last solution is more universal, but you may need to manually install concoct=1.0 (mamba install -c bioconda/label/cf201901 concoct) and pplacer (mamba install pplacer). ``` #### Express Conda/Mamba installation (the quickest but least configurable):