- Fixed the bug: when no
-gs
is supplied, tools exits with "File not not found" error.
- Fixed so that plots aren't generated when not enough data
- added version tag in write_results def to avoids tests failing
- Signture input can be directory or archive file, modified to handle dockstore json input
- Signature names now automatically constructed based on file names
- Added explicit file handler close to avoid empty files in the results archive
- Updated version tag in setup.py
- Moved tar generation step at the end to include result.html summary file in the archive
- Added utf-8 default encoding to read json, fixes text encoding issue in docker build
- renamed test file to avoid ignored by gitignore file
- remove exit statement in BAGEL
- added additional tests for bagel
- Added parallel version of BAGEL
- Added MAGeCK
- Html results summary and links to download data
- GPL3 LICENSE added
- Additional plotly figures
- updated appropriate types [int, str etc.,] for commandline inputs
- Added segmentation module in setup.py
- added requirements.txt file
- Corrected broken links in README
- Additional output formats for normalised and corrected counts
- segmentation is now optional
- Updated Readme
- First working python release of CRISPRclearR : https://github.com/francescojm/CRISPRcleanR
- Supports parallel data analysis
- produce interactive plotly graphs for QC analysis