From 3af24151b6f11b14c851269928f3789679cb713a Mon Sep 17 00:00:00 2001
From: Jeremy Arbesfeld <jarbesfeld@gmail.com>
Date: Fri, 24 Jan 2025 16:30:49 -0500
Subject: [PATCH] Remove fusion caller model tests

---
 tests/test_fusion_caller_models.py | 93 ------------------------------
 1 file changed, 93 deletions(-)
 delete mode 100644 tests/test_fusion_caller_models.py

diff --git a/tests/test_fusion_caller_models.py b/tests/test_fusion_caller_models.py
deleted file mode 100644
index 4f46470..0000000
--- a/tests/test_fusion_caller_models.py
+++ /dev/null
@@ -1,93 +0,0 @@
-"""Module for testing fusion caller classes"""
-
-from pathlib import Path
-
-import pytest
-
-from fusor.fusion_caller_models import (
-    Arriba,
-    Cicero,
-    EnFusion,
-    FusionCatcher,
-    Genie,
-    STARFusion,
-)
-from fusor.harvester import JAFFAHarvester
-
-
-def test_get_jaffa_records(fixture_data_dir):
-    """Test that get_jaffa_records works correctly"""
-    path = Path(fixture_data_dir / "jaffa_results.csv")
-    # records = JAFFA.load_records(path)
-    records = JAFFAHarvester.load_records(path)
-    assert len(records) == 491
-
-    path = Path(fixture_data_dir / "jaffa_resultss.csv")
-    with pytest.raises(ValueError, match=f"{path} does not exist"):
-        assert JAFFAHarvester.load_records(path)
-
-
-def test_get_star_fusion_records(fixture_data_dir):
-    """Test that get_star_fusion_records works correctly"""
-    path = Path(fixture_data_dir / "star-fusion.fusion_predictions.abridged.tsv")
-    records = STARFusion.load_records(path)
-    assert len(records) == 37
-
-    path = Path(fixture_data_dir / "star-fusion.fusion_predictions.abridged.tsvs")
-    with pytest.raises(ValueError, match=f"{path} does not exist"):
-        assert STARFusion.load_records(path)
-
-
-def test_get_fusion_catcher_records(fixture_data_dir):
-    """Test that get_fusion_catcher_records works correctly"""
-    path = Path(fixture_data_dir / "final-list_candidate-fusion-genes.txt")
-    fusions_list = FusionCatcher.load_records(path)
-    assert len(fusions_list) == 355
-
-    path = Path(fixture_data_dir / "final-list_candidate-fusion-genes.txts")
-    with pytest.raises(ValueError, match=f"{path} does not exist"):
-        assert FusionCatcher.load_records(path)
-
-
-def test_get_arriba_records(fixture_data_dir):
-    """Test that get_arriba_records works correctly"""
-    path = Path(fixture_data_dir / "fusions_arriba_test.tsv")
-    fusions_list = Arriba.load_records(path)
-    assert len(fusions_list) == 1
-
-    path = Path(fixture_data_dir / "fusionsd_arriba_test.tsv")
-    with pytest.raises(ValueError, match=f"{path} does not exist"):
-        assert Arriba.load_records(path)
-
-
-def test_get_cicero_records(fixture_data_dir):
-    """Test that get_cicero_records works correctly"""
-    path = Path(fixture_data_dir / "annotated.fusion.txt")
-    fusions_list = Cicero.load_records(path)
-    assert len(fusions_list) == 1
-
-    path = Path(fixture_data_dir / "annnotated.fusion.txt")
-    with pytest.raises(ValueError, match=f"{path} does not exist"):
-        assert Cicero.load_records(path)
-
-
-def test_get_enfusion_records(fixture_data_dir):
-    """Test that get_enfusion_records works correctly"""
-    path = Path(fixture_data_dir / "enfusion_test.csv")
-    fusions_list = EnFusion.load_records(path)
-    assert len(fusions_list) == 1
-
-    path = Path(fixture_data_dir / "enfusions_test.csv")
-    with pytest.raises(ValueError, match=f"{path} does not exist"):
-        assert EnFusion.load_records(path)
-
-
-def test_get_genie_records(fixture_data_dir):
-    """Test that get_genie_records works correctly"""
-    path = Path(fixture_data_dir / "genie_test.txt")
-    fusions_list = Genie.load_records(path)
-    assert len(fusions_list) == 1
-
-    path = Path(fixture_data_dir / "genie_tests.txt")
-    with pytest.raises(ValueError, match=f"{path} does not exist"):
-        assert Genie.load_records(path)