- Re-coding of all the internal structure of the cohorts using tibbles and in general the tidy data paradigm;
- New interface to access the data, based on ad hoc getter functions;
- All plotting functions have been re-implemented using ggplot to gain more flexibility, and remove the PDF jamming routines;
- Clone trees from CCF data have been extracted and included in a new dedicated package caravagn.github.io/ctree;
- Added a
NEWS.md
file to track changes to the package.
- Bugs fixing, and removal of the actual code taken from CloneEvol to increase clarity and improve performance.
- jamPDF is now associated to an option (default = FALSE) to increase compatibility with MS Windows systems.
- Released the first version of the tool, together with the paper PMID: 30171232.