DESCRIPTION

Package: GeneNMF
Type: Package
Title: Non-Negative Matrix Factorization for Single-Cell Omics
Version: 0.6.2
Authors@R: c(
  person('Massimo', 'Andreatta',
    email = 'massimo.andreatta@unil.ch',
    role = c('aut','cre'),
    comment = c(ORCID = '0000-0002-8036-2647')),
  person('Santiago', 'Carmona',
    email = 'santiago.carmona@unil.ch',
    role = c('aut'),
    comment = c(ORCID = '0000-0002-2495-0671')) 
  )
Description: A collection of methods to extract gene programs from single-cell gene expression data using non-negative matrix factorization (NMF). 'GeneNMF' contains functions to directly interact with the 'Seurat' toolkit and derive interpretable gene program signatures.
biocViews:
Depends: R (>= 4.3.0)
Imports: RcppML,
    Matrix,
    stats,
    methods,
    utils,
    Seurat (>= 4.3.0),
    cluster,
    lsa,
    irlba,
    pheatmap,
    dendextend,
    viridis
Suggests: knitr,
    rmarkdown,
    fgsea,
    msigdbr
VignetteBuilder: knitr
URL: https://github.com/carmonalab/GeneNMF
BugReports: https://github.com/carmonalab/GeneNMF/issues
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.2