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DESCRIPTION
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Package: scooter
Title: Exploratory data analysis for single-cell RNA-seq data at the sample level
Version: 1.0.0
Authors@R: c(
person(given = 'Christian', family = 'Halter',
email = '[email protected]', role = c('aut'),
comment = c(ORCID = '0009-0009-5479-2246')),
person(given = 'Josep', family = 'Garnica',
email = '[email protected]',
role = c('aut', 'cre'),
comment = c(ORCID = '0000-0001-9493-1321')),
person(given = 'Massimo', family = 'Andreatta',
email = '[email protected]',
role = c('aut'),
comment = c(ORCID = '0000-0002-8036-2647')),
person(given = 'Santiago', family = 'Carmona',
email = '[email protected]',
role = c('aut'),
comment = c(ORCID = '0000-0002-2495-0671'))
)
Description: scooter enables exploratory data analysis for single-cell RNA-seq data at the sample level.
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
VignetteBuilder: knitr
URL: https://github.com/carmonalab/scooter
BugReports: https://github.com/carmonalab/scooter/issues
License: GNU
LazyData: true
biocViews:
Depends: R (>= 4.4.0)
Imports:
Seurat (>= 5.0.0),
SeuratObject (>= 5.0.0),
BiocParallel (>= 1.34.2),
DESeq2 (>= 1.40.2),
SummarizedExperiment (>= 1.30.2),
Hotelling (>= 1.0-8),
MatrixGenerics (>= 1.12.3),
parallelly (>= 1.36.0),
stats(>= 4.4.0),
dplyr (>= 1.1.4),
ggplot2 (>= 3.4.4),
stringr (>= 1.5.1),
data.table (>= 1.14.8),
methods (>= 4.3.1),
tibble (>= 3.2.1),
rrapply (>= 1.2.6),
scran(>= 1.30.2),
igraph(>= 2.0.2),
BiocGenerics(>= 0.48.1),
factoextra(>= 1.0.7),
ggpubr(>= 0.6.0),
tidyr(>= 1.3.1),
ggraph (>= 2.1.0),
RColorBrewer (>= 1.1-3),
gridExtra (>= 2.3),
pheatmap (>= 1.0.12),
metap (>= 1.9),
multtest (>= 2.58.0),
purrr (>= 1.0.2),
ggplotify (>= 0.1.2),
patchwork (>= 1.2.0),
cluster (>= 2.1.6),
cccd (>= 1.6),
fastcluster (>= 1.2.6),
mclust (>= 6.1.1),
ComplexHeatmap(>= 2.20.0)
Suggests:
knitr,
rmarkdown,
testthat (>= 3.0.0)
Config/testthat/edition: 3