config.yaml

#------------------------------------------------------------
# Values for this lesson.
#------------------------------------------------------------

# Which carpentry is this (swc, dc, lc, or cp)?
# swc: Software Carpentry
# dc: Data Carpentry
# lc: Library Carpentry
# cp: Carpentries (to use for instructor training for instance)
# incubator: The Carpentries Incubator
carpentry: 'incubator'

# Overall title for pages.
title: 'Orchestrating Large-Scale Single-Cell Analysis with Bioconductor'

# Date the lesson was created (YYYY-MM-DD, this is empty by default)
created: 2024-01-10

# Comma-separated list of keywords for the lesson
keywords: 'single-cell RNA-seq, The Carpentries, lesson, genomics, bioconductor' # FIXME

# Life cycle stage of the lesson
# possible values: pre-alpha, alpha, beta, stable
life_cycle: 'pre-alpha' # FIXME

# License of the lesson
license: 'CC-BY 4.0'

# Link to the source repository for this lesson
source: 'https://github.com/ccb-hms/osca-carpentries'

# Default branch of your lesson
branch: 'main'

# Who to contact if there are any issues
contact: 'christopher_magnano@hms.harvard.edu' # TODO probably change to Ludwig

# Navigation ------------------------------------------------
#
# Use the following menu items to specify the order of
# individual pages in each dropdown section. Leave blank to
# include all pages in the folder.
#
# Example -------------
#
# episodes:
# - introduction.md
# - first-steps.md
#
# learners:
# - setup.md
#
# instructors:
# - instructor-notes.md
#
# profiles:
# - one-learner.md
# - another-learner.md

# Order of episodes in your lesson
episodes:
- intro-sce.Rmd
- eda_qc.Rmd
- cell_type_annotation.Rmd
- multi-sample.Rmd
- large_data.Rmd
- hca.Rmd

# Information for Learners
learners:

# Information for Instructors
instructors:

# Learner Profiles
profiles:

# Customisation ---------------------------------------------
#
# This space below is where custom yaml items (e.g. pinning
# sandpaper and varnish versions) should live