packages.bib

@Manual{R-base,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2022},
  url = {https://www.R-project.org/},
}

@Manual{R-bookdown,
  title = {bookdown: Authoring Books and Technical Documents with R Markdown},
  author = {Yihui Xie},
  year = {2022},
  note = {R package version 0.30},
  url = {https://CRAN.R-project.org/package=bookdown},
}

@Manual{R-charles,
  title = {charles: Common helpers for Charles data analysis},
  author = {Charles Dolladille},
  note = {R package version 0.0.0.9008},
  year = {2022},
}

@Manual{R-data.table,
  title = {data.table: Extension of `data.frame`},
  author = {Matt Dowle and Arun Srinivasan},
  year = {2022},
  note = {R package version 1.14.4},
  url = {https://CRAN.R-project.org/package=data.table},
}

@Manual{R-dplyr,
  title = {dplyr: A Grammar of Data Manipulation},
  author = {Hadley Wickham and Romain François and Lionel Henry and Kirill Müller},
  year = {2022},
  note = {R package version 1.0.10},
  url = {https://CRAN.R-project.org/package=dplyr},
}

@Manual{R-foreign,
  title = {foreign: Read Data Stored by Minitab, S, SAS, SPSS, Stata,
Systat, Weka, dBase, ...},
  author = {{R Core Team}},
  year = {2022},
  note = {R package version 0.8-83},
  url = {https://svn.r-project.org/R-packages/trunk/foreign/},
}

@Manual{R-Formula,
  title = {Formula: Extended Model Formulas},
  author = {Achim Zeileis and Yves Croissant},
  year = {2020},
  note = {R package version 1.2-4},
  url = {https://CRAN.R-project.org/package=Formula},
}

@Manual{R-fst,
  title = {fst: Lightning Fast Serialization of Data Frames},
  author = {Mark Klik},
  year = {2022},
  note = {R package version 0.9.8},
  url = {http://www.fstpackage.org},
}

@Manual{R-ggplot2,
  title = {ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics},
  author = {Hadley Wickham and Winston Chang and Lionel Henry and Thomas Lin Pedersen and Kohske Takahashi and Claus Wilke and Kara Woo and Hiroaki Yutani and Dewey Dunnington},
  year = {2022},
  note = {R package version 3.4.0},
  url = {https://CRAN.R-project.org/package=ggplot2},
}

@Manual{R-ggpubr,
  title = {ggpubr: ggplot2 Based Publication Ready Plots},
  author = {Alboukadel Kassambara},
  year = {2022},
  note = {R package version 0.5.0},
  url = {https://rpkgs.datanovia.com/ggpubr/},
}

@Manual{R-gridExtra,
  title = {gridExtra: Miscellaneous Functions for "Grid" Graphics},
  author = {Baptiste Auguie},
  year = {2017},
  note = {R package version 2.3},
  url = {https://CRAN.R-project.org/package=gridExtra},
}

@Manual{R-Hmisc,
  title = {Hmisc: Harrell Miscellaneous},
  author = {Harrell, Jr., Frank E},
  year = {2022},
  note = {R package version 4.7-1},
  url = {https://hbiostat.org/R/Hmisc/},
}

@Manual{R-knitr,
  title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
  author = {Yihui Xie},
  year = {2022},
  note = {R package version 1.41},
  url = {https://yihui.org/knitr/},
}

@Manual{R-lattice,
  title = {lattice: Trellis Graphics for R},
  author = {Deepayan Sarkar},
  year = {2021},
  note = {R package version 0.20-45},
  url = {http://lattice.r-forge.r-project.org/},
}

@Manual{R-magrittr,
  title = {magrittr: A Forward-Pipe Operator for R},
  author = {Stefan Milton Bache and Hadley Wickham},
  year = {2022},
  note = {R package version 2.0.3},
  url = {https://CRAN.R-project.org/package=magrittr},
}

@Manual{R-openxlsx,
  title = {openxlsx: Read, Write and Edit xlsx Files},
  author = {Philipp Schauberger and Alexander Walker},
  year = {2022},
  note = {R package version 4.2.5.1},
  url = {https://CRAN.R-project.org/package=openxlsx},
}

@Manual{R-purrr,
  title = {purrr: Functional Programming Tools},
  author = {Lionel Henry and Hadley Wickham},
  year = {2022},
  note = {R package version 0.3.5},
  url = {https://CRAN.R-project.org/package=purrr},
}

@Manual{R-readstata13,
  title = {readstata13: Import Stata Data Files},
  author = {Jan Marvin Garbuszus and Sebastian Jeworutzki},
  year = {2021},
  note = {R package version 0.10.0},
  url = {https://github.com/sjewo/readstata13},
}

@Manual{R-rlang,
  title = {rlang: Functions for Base Types and Core R and Tidyverse Features},
  author = {Lionel Henry and Hadley Wickham},
  year = {2022},
  note = {R package version 1.0.6},
  url = {https://CRAN.R-project.org/package=rlang},
}

@Manual{R-rmarkdown,
  title = {rmarkdown: Dynamic Documents for R},
  author = {JJ Allaire and Yihui Xie and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang and Richard Iannone},
  year = {2022},
  note = {R package version 2.18},
  url = {https://CRAN.R-project.org/package=rmarkdown},
}

@Manual{R-rms,
  title = {rms: Regression Modeling Strategies},
  author = {Frank E. {Harrell, Jr.}},
  year = {2022},
  note = {R package version 6.3-0},
  url = {https://CRAN.R-project.org/package=rms},
}

@Manual{R-SparseM,
  title = {SparseM: Sparse Linear Algebra},
  author = {Roger Koenker},
  year = {2021},
  note = {R package version 1.81},
  url = {http://www.econ.uiuc.edu/~roger/research/sparse/sparse.html},
}

@Manual{R-survival,
  title = {survival: Survival Analysis},
  author = {Terry M Therneau},
  year = {2022},
  note = {R package version 3.4-0},
  url = {https://github.com/therneau/survival},
}

@Manual{R-survminer,
  title = {survminer: Drawing Survival Curves using ggplot2},
  author = {Alboukadel Kassambara and Marcin Kosinski and Przemyslaw Biecek},
  year = {2021},
  note = {R package version 0.4.9},
  url = {https://rpkgs.datanovia.com/survminer/index.html},
}

@Book{bookdown2016,
  title = {bookdown: Authoring Books and Technical Documents with {R} Markdown},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2016},
  note = {ISBN 978-1138700109},
  url = {https://bookdown.org/yihui/bookdown},
}

@Article{Formula2010,
  title = {Extended Model Formulas in {R}: Multiple Parts and Multiple Responses},
  author = {Achim Zeileis and Yves Croissant},
  journal = {Journal of Statistical Software},
  year = {2010},
  volume = {34},
  number = {1},
  pages = {1--13},
  doi = {10.18637/jss.v034.i01},
}

@Book{ggplot22016,
  author = {Hadley Wickham},
  title = {ggplot2: Elegant Graphics for Data Analysis},
  publisher = {Springer-Verlag New York},
  year = {2016},
  isbn = {978-3-319-24277-4},
  url = {https://ggplot2.tidyverse.org},
}

@Book{knitr2015,
  title = {Dynamic Documents with {R} and knitr},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2015},
  edition = {2nd},
  note = {ISBN 978-1498716963},
  url = {https://yihui.org/knitr/},
}

@InCollection{knitr2014,
  booktitle = {Implementing Reproducible Computational Research},
  editor = {Victoria Stodden and Friedrich Leisch and Roger D. Peng},
  title = {knitr: A Comprehensive Tool for Reproducible Research in {R}},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  year = {2014},
  note = {ISBN 978-1466561595},
  url = {http://www.crcpress.com/product/isbn/9781466561595},
}

@Book{lattice2008,
  title = {Lattice: Multivariate Data Visualization with R},
  author = {Deepayan Sarkar},
  publisher = {Springer},
  address = {New York},
  year = {2008},
  note = {ISBN 978-0-387-75968-5},
  url = {http://lmdvr.r-forge.r-project.org},
}

@Book{rmarkdown2018,
  title = {R Markdown: The Definitive Guide},
  author = {Yihui Xie and J.J. Allaire and Garrett Grolemund},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2018},
  note = {ISBN 9781138359338},
  url = {https://bookdown.org/yihui/rmarkdown},
}

@Book{rmarkdown2020,
  title = {R Markdown Cookbook},
  author = {Yihui Xie and Christophe Dervieux and Emily Riederer},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2020},
  note = {ISBN 9780367563837},
  url = {https://bookdown.org/yihui/rmarkdown-cookbook},
}

@Book{survival-book,
  title = {Modeling Survival Data: Extending the {C}ox Model},
  author = {{Terry M. Therneau} and {Patricia M. Grambsch}},
  year = {2000},
  publisher = {Springer},
  address = {New York},
  isbn = {0-387-98784-3},
}