Num_features is 0 for PROTEINS dataset

[zhang677]

Hi all, I followed the installation process and can run the 1-2-3-qm9.py. However, I met the dataset problem when I ran the 1-2-3-proteins.py. I print the dataset.data:

Data(edge_index=[2, 156166], x=[41859, 0], y=[1109], edge_index_2=[2, 11326562], assignment_index_2=[2, 3116620], iso_type_2=[1558310, 12], edge_index_3=[2, 531644], assignment_index_3=[2, 540045], iso_type_3=[180015, 20])

It seems that the input x's shape is not correct, which causes the dataset.num_features to be 0. The code also printed that it downloaded the dataset from https://www.chrsmrrs.com/graphkerneldatasets/PROTEINS.zip. Is there any solution for this problem? Thank you!

[rusty1s]

Can you upgrade to PyG 2.2 and remove the pre-processed PROTEINS dataset? This should have been fixed already.

[zhang677]

Can you upgrade to PyG 2.2 and remove the pre-processed PROTEINS dataset? This should have been fixed already.

Thanks a lot! It correctly runs now :)