citations.bib

@inproceedings{Graefe1990,
 author = {Graefe, Goetz},
 title = {Encapsulation of Parallelism in the Volcano Query Processing System},
 booktitle = {Proceedings of the 1990 ACM SIGMOD International Conference on Management of Data},
 series = {SIGMOD '90},
 year = {1990},
 isbn = {0-89791-365-5},
 location = {Atlantic City, New Jersey, USA},
 pages = {102--111},
 numpages = {10},
 url = {http://doi.acm.org/10.1145/93597.98720},
 doi = {10.1145/93597.98720},
 acmid = {98720},
 publisher = {ACM},
 address = {New York, NY, USA},
} 
@inproceedings{shi2014towards,
  title={Towards unified ad-hoc data processing},
  author={Shi, Xiaogang and Cui, Bin and Dobbie, Gillian and Ooi, Beng Chin},
  booktitle={Proceedings of the 2014 ACM SIGMOD International Conference on Management of Data},
  pages={1263--1274},
  year={2014},
  organization={ACM}
}
@inproceedings{viglas2014just,
  title={Just-in-time compilation for SQL query processing},
  author={Viglas, Stratis D},
  booktitle={Data Engineering (ICDE), 2014 IEEE 30th International Conference on},
  pages={1298--1301},
  year={2014},
  organization={IEEE}
}
@article{guha2012large,
  title={Large complex data: divide and recombine (d\&r) with rhipe},
  author={Guha, Saptarshi and Hafen, Ryan and Rounds, Jeremiah and Xia, Jin and Li, Jianfu and Xi, Bowei and Cleveland, William S},
  journal={Stat},
  volume={1},
  number={1},
  pages={53--67},
  year={2012},
  publisher={Wiley Online Library}
}
@article{dean2008mapreduce,
  title={MapReduce: simplified data processing on large clusters},
  author={Dean, Jeffrey and Ghemawat, Sanjay},
  journal={Communications of the ACM},
  volume={51},
  number={1},
  pages={107--113},
  year={2008},
  publisher={ACM}
}
@article{Robey2011217,
title = "In search of numerical consistency in parallel programming ",
journal = "Parallel Computing ",
volume = "37",
number = "4–5",
pages = "217 - 229",
year = "2011",
note = "",
issn = "0167-8191",
doi = "https://doi.org/10.1016/j.parco.2011.02.009",
url = "http://www.sciencedirect.com/science/article/pii/S0167819111000238",
author = "Robert W. Robey and Jonathan M. Robey and Rob Aulwes",
keywords = "Kahan summation",
keywords = "Knuth summation",
keywords = "Reproducibility",
keywords = "Numerical consistency",
keywords = "Parallel programming",
keywords = "Finite difference",
keywords = "Finite volume "
}
@article{lee2015fly,
  title={On-the-fly pipeline parallelism},
  author={Lee, I and Angelina, Ting and Leiserson, Charles E and Schardl, Tao B and Zhang, Zhunping and Sukha, Jim},
  journal={ACM Transactions on Parallel Computing},
  volume={2},
  number={3},
  pages={17},
  year={2015},
  publisher={ACM}
}
@article{tam2007breaking,
  title={Breaking the (Benford) law: Statistical fraud detection in campaign finance},
  author={Tam Cho, Wendy K and Gaines, Brian J},
  journal={The american statistician},
  volume={61},
  number={3},
  pages={218--223},
  year={2007},
  publisher={Taylor \& Francis}
}
@Article{bigmemory,
    title = {Scalable Strategies for Computing with Massive Data},
    author = {Michael J. Kane and John Emerson and Stephen Weston},
    journal = {Journal of Statistical Software},
    year = {2013},
    volume = {55},
    number = {14},
    pages = {1--19},
    url = {http://www.jstatsoft.org/v55/i14/},
}
@article{sen2017rosa,
  title={ROSA: R Optimizations with Static Analysis},
  author={Sen, Rathijit and Zhu, Jianqiao and Patel, Jignesh M and Jha, Somesh},
  journal={arXiv preprint arXiv:1704.02996},
  year={2017}
}
@article{lang2014enhancing,
  title={Enhancing R with advanced compilation tools and methods},
  author={Lang, Duncan Temple and others},
  journal={Statistical Science},
  volume={29},
  number={2},
  pages={181--200},
  year={2014},
  publisher={Institute of Mathematical Statistics}
}
@book{daganzo1997fundamentals,
  title={Fundamentals of transportation and traffic operations},
  author={Daganzo, Carlos F},
  year={1997},
  publisher={Emerald Group Publishing Limited}
}
@article{boyd2011distributed,
  title={Distributed optimization and statistical learning via the alternating direction method of multipliers},
  author={Boyd, Stephen and Parikh, Neal and Chu, Eric and Peleato, Borja and Eckstein, Jonathan},
  journal={Foundations and Trends{\textregistered} in Machine Learning},
  volume={3},
  number={1},
  pages={1--122},
  year={2011},
  publisher={Now Publishers Inc.}
}
@book{venables2013modern,
  title={Modern applied statistics with S-PLUS},
  author={Venables, William N and Ripley, Brian D},
  year={2013},
  publisher={Springer Science \& Business Media}
}
@article{li2011fundamental,
  title={Fundamental diagram of traffic flow: new identification scheme and further evidence from empirical data},
  author={Li, Jia and Zhang, H},
  journal={Transportation Research Record: Journal of the Transportation Research Board},
  number={2260},
  pages={50--59},
  year={2011},
  publisher={Transportation Research Board of the National Academies}
}
@misc{compare_bigdata,
Author = {Parmita Mehta and Sven Dorkenwald and Dongfang Zhao and Tomer Kaftan and Alvin Cheung and Magdalena Balazinska and Ariel Rokem and Andrew Connolly and Jacob Vanderplas and Yusra AlSayyad},
Title = {Comparative Evaluation of Big-Data Systems on Scientific Image Analytics Workloads},
Year = {2016},
Eprint = {arXiv:1612.02485},
}
@article{guinness2016permutation,
  title={Permutation Methods for Sharpening Gaussian Process Approximations},
  author={Guinness, Joseph},
  journal={arXiv preprint arXiv:1609.05372},
  year={2016}
}
@article{bohringer2013dynamic,
  title={Dynamic parallelization of R functions},
  author={B{\"o}hringer, Stefan},
  journal={The R Journal},
  volume={5},
  number={2},
  pages={88--96},
  year={2013}
}
@ONLINE{hdf5,
    author = {{The HDF Group}},
    title = "{Hierarchical Data Format, version 5}",
    year = {1997-NNNN},
    note = {/HDF5/}
}
@article{malakhov2016composable,
  title={Composable Multi-Threading for Python Libraries},
  author={Malakhov, Anton},
  year={2016}
}
@article{swan2015connected,
  title={Connected car: quantified self becomes quantified car},
  author={Swan, Melanie},
  journal={Journal of Sensor and Actuator Networks},
  volume={4},
  number={1},
  pages={2--29},
  year={2015},
  publisher={Multidisciplinary Digital Publishing Institute}
}
@inproceedings{jia2001pems,
  title={The PeMS algorithms for accurate, real-time estimates of g-factors and speeds from single-loop detectors},
  author={Jia, Zhanfeng and Chen, Chao and Coifman, Ben and Varaiya, Pravin},
  booktitle={Intelligent Transportation Systems, 2001. Proceedings. 2001 IEEE},
  pages={536--541},
  year={2001},
  organization={IEEE}
}
@inproceedings{zhang2016hogwild,
  title={HogWild++: A New Mechanism for Decentralized Asynchronous Stochastic Gradient Descent},
  author={Zhang, Huan and Hsieh, Cho-Jui and Akella, Venkatesh},
  year={2016},
  organization={ICDM}
}
@inproceedings{swig,
 author = {Beazley, David M.},
 title = {SWIG: An Easy to Use Tool for Integrating Scripting Languages with C and C++},
 booktitle = {Proceedings of the 4th Conference on USENIX Tcl/Tk Workshop, 1996 - Volume 4},
 series = {TCLTK'96},
 year = {1996},
 location = {Monterey, California},
 pages = {15--15},
 numpages = {1},
 url = {http://dl.acm.org/citation.cfm?id=1267498.1267513},
 acmid = {1267513},
 publisher = {USENIX Association},
 address = {Berkeley, CA, USA},
} 
@article{opencv_library,
    author = {Bradski, G.},
    citeulike-article-id = {2236121},
    journal = {Dr. Dobb's Journal of Software Tools},
    keywords = {bibtex-import},
    posted-at = {2008-01-15 19:21:54},
    priority = {4},
    title = {opencv},
    year = {2000}
}
@book{wickham2015advanced,
  title={Advanced R},
  author={Wickham, H.},
  isbn={9781498759809},
  series={Chapman \& Hall/CRC The R Series},
  url={https://books.google.com/books?id=FfsYCwAAQBAJ},
  year={2015},
  publisher={CRC Press}
}
@inproceedings{lattner2004llvm,
  title={LLVM: A compilation framework for lifelong program analysis \& transformation},
  author={Lattner, Chris and Adve, Vikram},
  booktitle={Proceedings of the international symposium on Code generation and optimization: feedback-directed and runtime optimization},
  pages={75},
  year={2004},
  organization={IEEE Computer Society}
}
@article{bezanson2014julia,
  title={Julia: A fresh approach to numerical computing},
  author={Bezanson, Jeff and Edelman, Alan and Karpinski, Stefan and Shah, Viral B},
  journal={arXiv preprint arXiv:1411.1607},
  year={2014}
}
@book{matloff2015parallel,
  title={Parallel Computing for Data Science: With Examples in R, C++ and CUDA},
  author={Matloff, N.},
  isbn={9781466587038},
  series={Chapman \& Hall/CRC The R Series},
  url={https://books.google.com/books?id=SsbECQAAQBAJ},
  year={2015},
  publisher={CRC Press}
}
@article{kennedy1978use,
  title={Use-definition chains with applications},
  author={Kennedy, Ken},
  journal={Computer Languages},
  volume={3},
  number={3},
  pages={163--179},
  year={1978},
  publisher={Elsevier}
}
@inproceedings{Lattner2004,
 author = {Lattner, Chris and Adve, Vikram},
 title = {LLVM: A Compilation Framework for Lifelong Program Analysis \& Transformation},
 booktitle = {Proceedings of the International Symposium on Code Generation and Optimization: Feedback-directed and Runtime Optimization},
 series = {CGO '04},
 year = {2004},
 isbn = {0-7695-2102-9},
 location = {Palo Alto, California},
 pages = {75--},
 url = {http://dl.acm.org/citation.cfm?id=977395.977673},
 acmid = {977673},
 publisher = {IEEE Computer Society},
 address = {Washington, DC, USA},
} 
@article{schmidberger2009state,
  title={State-of-the-art in Parallel Computing with R},
  author={Schmidberger, Markus and Morgan, Martin and Eddelbuettel, Dirk and Yu, Hao and Tierney, Luke and Mansmann, Ulrich},
  journal={Journal of Statistical Software},
  volume={47},
  number={1},
  year={2009}
}
@article{girkar1992automatic,
  title={Automatic extraction of functional parallelism from ordinary programs},
  author={Girkar, Milind and Polychronopoulos, Constantine D.},
  journal={IEEE Transactions on Parallel and Distributed Systems},
  volume={3},
  number={2},
  pages={166--178},
  year={1992},
  publisher={IEEE}
}
@article{sarkar1991automatic,
  title={Automatic partitioning of a program dependence graph into parallel tasks},
  author={Sarkar, Vivek},
  journal={IBM Journal of Research and Development},
  volume={35},
  number={5.6},
  pages={779--804},
  year={1991},
  publisher={IBM}
}
@article{adve2004parallel,
  title={Parallel program performance prediction using deterministic task graph analysis},
  author={Adve, Vikram S and Vernon, Mary K},
  journal={ACM Transactions on Computer Systems (TOCS)},
  volume={22},
  number={1},
  pages={94--136},
  year={2004},
  publisher={ACM}
}
@inproceedings{cosnard1995automatic,
  title={Automatic task graph generation techniques},
  author={Cosnard, Michel and Loi, Michel},
  booktitle={System Sciences, 1995. Proceedings of the Twenty-Eighth Hawaii International Conference on},
  volume={2},
  pages={113--122},
  year={1995},
  organization={IEEE}
}
@article{ferrante1987,
 author = {Ferrante, Jeanne and Ottenstein, Karl J. and Warren, Joe D.},
 title = {The Program Dependence Graph and Its Use in Optimization},
 journal = {ACM Trans. Program. Lang. Syst.},
 issue_date = {July 1987},
 volume = {9},
 number = {3},
 month = jul,
 year = {1987},
 issn = {0164-0925},
 pages = {319--349},
 numpages = {31},
 url = {http://doi.acm.org/10.1145/24039.24041},
 doi = {10.1145/24039.24041},
 acmid = {24041},
 publisher = {ACM},
 address = {New York, NY, USA},
} 
@book{chambers2016extending,
  title={Extending R},
  author={Chambers, John M},
  year={2016},
  publisher={CRC Press}
}
@online{Rlang,
  author = {R Core Team},
  title = {R Language Reference},
  year = 2016,
  url = {https://cran.r-project.org/doc/manuals/r-release/R-lang.html},
  urldate = {2017-02-11}
}

@misc{compare_bigdata,
Author = {Parmita Mehta and Sven Dorkenwald and Dongfang Zhao and Tomer Kaftan and Alvin Cheung and Magdalena Balazinska and Ariel Rokem and Andrew Connolly and Jacob Vanderplas and Yusra AlSayyad},
Title = {Comparative Evaluation of Big-Data Systems on Scientific Image Analytics Workloads},
Year = {2016},
Eprint = {arXiv:1612.02485},
}
@article{guinness2016permutation,
  title={Permutation Methods for Sharpening Gaussian Process Approximations},
  author={Guinness, Joseph},
  journal={arXiv preprint arXiv:1609.05372},
  year={2016}
}
@misc{ wiki:purefunc,
   author = "Wikipedia",
   title = "Pure function --- Wikipedia{,} The Free Encyclopedia",
   year = "2016",
   url = "https://en.wikipedia.org/w/index.php?title=Pure_function&oldid=751910608",
   note = "[Online; accessed 28-November-2016]"
 }
@article{bohringer2013dynamic,
  title={Dynamic parallelization of R functions},
  author={B{\"o}hringer, Stefan},
  journal={The R Journal},
  volume={5},
  number={2},
  pages={88--96},
  year={2013}
}
@ONLINE{hdf5,
    author = {{The HDF Group}},
    title = "{Hierarchical Data Format, version 5}",
    year = {1997-NNNN},
    note = {/HDF5/}
}
@article{arnold2015iotools,
  title={iotools: High-Performance I/O Tools for R},
  author={Arnold, Taylor and Kane, Michael and Urbanek, Simon},
  journal={arXiv preprint arXiv:1510.00041},
  year={2015}
}
@article{matloff2014software,
  title={Software alchemy: turning complex statistical computations into embarrassingly-parallel ones},
  author={Matloff, Norman},
  journal={arXiv preprint arXiv:1409.5827},
  year={2014}
}
@article{kane2010bigmemory,
  title={bigmemory: Manage massive matrices with shared memory and memory-mapped files},
  author={Kane, Michael J and Emerson, John W},
  journal={R package version},
  volume={4},
  number={3},
  year={2010}
}