0.0.1

A better genomic interval that is compatible with HTSJDK.

val interval = Interval("chr1", start = 1, end = 2, name = "MyInterval")
interval.sameCoordinates(interval) shouldBe true
interval.asHtsJdk.getContig shouldBe "chr1"

Features

• The Interval is a 1-based fully closed span upon a reference sequence
• Each Interval magically mixes in HTSJDK's Interval while hiding the HTSJDK API
• The HTSJDK API can be summoned by casting the Interval with .asHtsJdk()
• Implicit conversions allow for seamless interoperability between either Interval class
• Grants you a memory-friendly way of having a Scala-esque API upon HTSJDK's Interval

If Mill is your build tool

ivyDeps ++ Agg(ivy"io.cvbio.coord::interval::0.0.1")

If SBT is your build tool

libraryDependencies += "io.cvbio.coord" %% "interval" % "0.0.1"