CITATION

citEntry(entry="article",
         title = paste("CopywriteR: DNA copy number detection from off-target",
                       "sequence data"),
         author = personList(as.person("Thomas Kuilman"),
                             as.person("Arno Velds"),
                             as.person("Kristel Kemper"),
                             as.person("Marco Ranzani"),
                             as.person("Lorenzo Bombardelli"),
                             as.person("Marlous Hoogstraat"),
                             as.person("Ekaterina Nevedomskaya"),
                             as.person("Guotai Xu"),
                             as.person("Julian de Ruiter"),
                             as.person("Martijn P. Lolkema"),
                             as.person("Bauke Ylstra"),
                             as.person("Jos Jonkers"),
                             as.person("Sven Rottenberg"),
                             as.person("Lodewyk F. Wessels"),
                             as.person("David J. Adams"),
                             as.person("Daniel S. Peeper"),
                             as.person("Oscar Krijgsman")),
         year = 2015,
         journal = "Genome Biology",
         volume = "16",
         number = "1",
         pages = "1-15",
         abstract = paste("Current methods for detection of copy number",
                          "variants (CNV) and aberrations (CNA) from targeted",
                          "sequencing data are based on the depth of coverage",
                          "of captured exons. Accurate CNA determination is",
                          "complicated by uneven genomic distribution and",
                          "non-uniform capture efficiency of targeted exons.",
                          "Here we present CopywriteR, which eludes these",
                          "problems by exploiting `off-target' sequence reads.",
                          "CopywriteR allows for extracting uniformly",
                          "distributed copy number information, can be used",
                          "without reference, and can be applied to sequencing",
                          "data obtained from various techniques including",
                          "chromatin immunoprecipitation and target enrichment",
                          "on small gene panels. CopywriteR outperforms",
                          "existing methods and constitutes a widely",
                          "applicable alternative to available tools."),
         issn = "1465-6906",
         doi = "10.1186/s13059-015-0617-1",
         url = "http://dx.doi.org/10.1186/s13059-015-0617-1",
         textVersion = paste("Kuilman, T., Velds, A., Kemper, K., Ranzani, M.,",
                             "Bombardelli, L., Hoogstraat, M., et al. (2015).",
                             "CopywriteR: DNA copy number detection from",
                             "off-target sequence data. Genome Biology, 16,",
                             "49. http://doi.org/10.1186/s13059-015-0617-1"))