DESCRIPTION

Package: epiAneufinder
Type: Package
Title: Calling copy numbers from scATAC-seq data
Version: 1.0.3
Authors@R: c(person('Akshaya', 'Ramakrishnan', NULL, 'akshaya4r@gmail.com', c('cre', 'aut')),
             person('Aikaterini', 'Symeonidi', NULL, 'aikaterini.symeonidi@helmholtz-muenchen.de', 'aut'),
             person('Patrick', 'Hanel', NULL, 'patrick.hanel@helmholtz-muenchen.de', 'aut'),
             person('Katharina', 'Schmid', NULL, 'katharina.schmid@bmc.med.lmu.de', 'aut'),
             person('Maria', 'Richter', NULL, 'maria.richter@bmc.med.lmu.de', 'aut'),
             person('Michael', 'Schubert', NULL, NULL, 'aut'),
             person('Maria', 'Colomé-Tatché', NULL, 'maria.colome@helmholtz-muenchen.de', 'aut'))
Description: Package to detect breakpoints and assign somies to scATAC-seq data.
License: GPL-3
VignetteBuilder: knitr, rmarkdown
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.1
Depends:
    R (>= 3.5)
biocViews:
Imports: 
    GenomicAlignments,
    Matrix,
    SummarizedExperiment,
    data.table,
    plyranges,
    Rsamtools,
    GenomeInfoDb,
    BSgenome.Hsapiens.UCSC.hg38,
    GenomicRanges,
    stats,
    Biostrings,
    magrittr,
    BiocGenerics,
    S4Vectors,
    ggplot2,
    cowplot,
    gridExtra,
    parallel,
    ggdendro,
    R.utils
Suggests: 
    testthat,
    fpc,
    knitr,
    rmarkdown